Csa1G039030 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G039030
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein; contains IPR012416 (Calmodulin binding protein-like)
LocationChr1 : 3716795 .. 3719067 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGCAAGTTCGCCGTCGACCACCACGGATTTCTCTAAGCCGTCCAATTCTCTCGATCACTTGCTGTAAATTCGCCGTCGAACACCACGATTTTTACGCAATTGGCATCGACGACGGCCATACGCGGCGGTTGACTTTCAACATTTGGATAGTCGCCGCCGTTGTTGATTTCATCGGGGTGGTCGACGGAAAATTTGCAGCAGGTGATTGAGAGGATTGGATGGGTGAGGATTTCAGTGGTAGCATTGTGAAAGAGAGATCTGGAAAGATGCGGCTGCTCCACGGGCCAAATGAATGTGACTCTTTGCTACTGCGCTGCAACCATTGAGGATCTTGAATTCACCGATAAGTCAGACTGGGTTCGGAGAAGAAATTTCAGCTTGGAGTTTGAGTGTTTTGAGGTCCAATCTTCAAAAAGGCGTCGGATTCAGGAAGCCATAACTGAACCAATCATGGTCACATACGAAGCATTTACAATTCTTTTCCAAAAATAAAATATCTGATTGGCTGACGATGGGATGGGACCCGACCAATTATCGGAAACCAAATCAATTTTGATTTATTTTTTGCATTGCTGTCGAGGATTCGAATTCTCTTACTTGCACGTTTTCTTGCGATGATATTCTCTGGTACTCACTCATCGGAGGATAAAGTTCGCTTCCGTTAAGGTACTTTCCAGTGTAATCTTTTTCCTCTCCCGGTAGACAAAAGCAAAGTATTGCTCAATTTTTTGGCTTGTCGCGATGAATTCGTTGAATTGTATTATCCTTCTTTGATTGGACCTGTAATTGTTTGTCAGCAGGAAAGGGATGGAGGTTCTTTACTTTTGGCCCAGCCGTATACCTCTTTTTCAAAATTGAAATGGACATTTTTTTTAAAAAAAGTCCCATTTATGAATGAAAACTATAGTTGGGTTTTCCCTTTTTATCCTTTTAGCTCCCTATTAGCTCCCTTATGGGAATTTCTTCATGGTCATGCTTAAGCAATCGCTGCAAATAATTATGTGTTTTACTGTTTTCTGATGGTTCTAGATGTTTAGGGTTTAGGGATTGAGACAAGATGTGGACGGGTATATTTTCTGTCTACTTGCTTAGAGTTTCTCTCGTGATGCGAGTATGGAAATTAAAATTATTAGAAGTGGTTGCTTCAAGTTGTAGGAACTTGGAAGTATCCTTCTTGTTGATCCTCATAATTTCACATTCATTGGCTCAGGTTTGGACAGAAAGTCCCTTTTTTGTTAGAATAAGAAAAGGCATTAATGTTCCCAAGTACTGTGTCCTGTACATTTAGGCAAATGTGATAGATTTCTGCCTTTTTCGGCTCCTTTAATCTTTTTCTATAATTGGTATCATTTTTAATTATGCAGCTAAAGAAAGAGAACACAGTAATAGATTCTCGGCCTAAAAGCTTTTAACTGATGAGGGCAAGTTTCACGCTGAATGTTTTTCCTCTTTTAATGTGCAGAATGTGATGGGGTGTCTTTATTCTTTAATGTGTTCAATGTTTTTTCATCTCCTCAACAGTTATTTGGATGAATTTGGTGAATCGAGATTGTTACATACTGTAACTTTGTATTCCTTTTGCAGGCAGTCAGTTCATCTACATTTGTAGGCATTTGCATTATCATCCAGATGAACTTCGTGACCTTTAAATTTGTCTGATGCAGCCATGTGAACTCCTTATCAGAAGCACATAAGGAAGGCAAGCTACGCATTGAAAGCTTGGAGAAGGAATTGACAAACTGCACCGAGGAAATAGGTACAGGAAATTCTCTGTATAGTAATCAGTTGGAGACCACTTCTAAGTTGGTTATGGTGAAGTTTTCTTCTAAAATGTTGGCCTTGGCATAGTTTTAATAGATTTTATTTGTTGGCTGCCGGTTATTCTGAGTTATGATCCTGATGAAGTTACTTTTTGTTGGTGCATTGTATTTTTGTCTACTCCGTACCTACTTTCCTTCCAAGTTTTAAATAACAACCCTTCCCTGTCCTAAGCTGGATTACTATCTCATGACATATCTGGTCCTAATGTAAGATTTTCAAGGAGACCCCATTTGCTTTTTCCAAAATTTGTGCTGCCTTTAGAATCAAATTGGTTCTTCTAGGCAACATGATATCTGCTTTATTTGAAACCGCCAGGTTTTAACTTTCTAGTGATTGACACTTGACAGGAGGAGTTAAGAGAAGAGAAGTTGAAAGCAAAAAAGAAGAAGCAGAGGACTTTGCTCAAGAAATGGCTAAAGCTAAGGTACCAAATTACCGATTTGCTTGA

mRNA sequence

ATGCTGCAAGTTCGCCGTCGACCACCACGGATTTCTCTAAGCCGTCCAATTCTCTCGATCACTTGCTGTAAATTCGCCGTCGAACACCACGATTTTTACGCAATTGGCATCGACGACGGCCATACGCGGCGGTTGACTTTCAACATTTGGATAGTCGCCGCCGTTGTTGATTTCATCGGGAGAGATCTGGAAAGATGCGGCTGCTCCACGGGCCAAATGAATGTGACTCTTTGCTACTGCGCTGCAACCATTGAGGATCTTGAATTCACCGATAAGTCAGACTGGGTTCGGAGAAGAAATTTCAGCTTGGAGTTTGAGTGTTTTGAGGTCCAATCTTCAAAAAGGCGTCGGATTCAGGAAGCCATAACTGAACCAATCATGGATTCGAATTCTCTTACTTGCACGTTTTCTTGCGATGATATTCTCTGCCATGTGAACTCCTTATCAGAAGCACATAAGGAAGGCAAGCTACGCATTGAAAGCTTGGAGAAGGAATTGACAAACTGCACCGAGGAAATAGGAGGAGTTAAGAGAAGAGAAGTTGAAAGCAAAAAAGAAGAAGCAGAGGACTTTGCTCAAGAAATGGCTAAAGCTAAGGTACCAAATTACCGATTTGCTTGA

Coding sequence (CDS)

ATGCTGCAAGTTCGCCGTCGACCACCACGGATTTCTCTAAGCCGTCCAATTCTCTCGATCACTTGCTGTAAATTCGCCGTCGAACACCACGATTTTTACGCAATTGGCATCGACGACGGCCATACGCGGCGGTTGACTTTCAACATTTGGATAGTCGCCGCCGTTGTTGATTTCATCGGGAGAGATCTGGAAAGATGCGGCTGCTCCACGGGCCAAATGAATGTGACTCTTTGCTACTGCGCTGCAACCATTGAGGATCTTGAATTCACCGATAAGTCAGACTGGGTTCGGAGAAGAAATTTCAGCTTGGAGTTTGAGTGTTTTGAGGTCCAATCTTCAAAAAGGCGTCGGATTCAGGAAGCCATAACTGAACCAATCATGGATTCGAATTCTCTTACTTGCACGTTTTCTTGCGATGATATTCTCTGCCATGTGAACTCCTTATCAGAAGCACATAAGGAAGGCAAGCTACGCATTGAAAGCTTGGAGAAGGAATTGACAAACTGCACCGAGGAAATAGGAGGAGTTAAGAGAAGAGAAGTTGAAAGCAAAAAAGAAGAAGCAGAGGACTTTGCTCAAGAAATGGCTAAAGCTAAGGTACCAAATTACCGATTTGCTTGA

Protein sequence

MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIGRDLERCGCSTGQMNVTLCYCAATIEDLEFTDKSDWVRRRNFSLEFECFEVQSSKRRRIQEAITEPIMDSNSLTCTFSCDDILCHVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKRREVESKKEEAEDFAQEMAKAKVPNYRFA*
Homology
[Close]
BLAST of Csa1G039030 vs. TrEMBL
Match: A0A0A0LVL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039030 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 2.2e-115
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1 

Query: 1   MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIG 60
           MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIG
Sbjct: 1   MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIG 60

Query: 61  RDLERCGCSTGQMNVTLCYCAATIEDLEFTDKSDWVRRRNFSLEFECFEVQSSKRRRIQE 120
           RDLERCGCSTGQMNVTLCYCAATIEDLEFTDKSDWVRRRNFSLEFECFEVQSSKRRRIQE
Sbjct: 61  RDLERCGCSTGQMNVTLCYCAATIEDLEFTDKSDWVRRRNFSLEFECFEVQSSKRRRIQE 120

Query: 121 AITEPIMDSNSLTCTFSCDDILCHVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKRRE 180
           AITEPIMDSNSLTCTFSCDDILCHVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKRRE
Sbjct: 121 AITEPIMDSNSLTCTFSCDDILCHVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKRRE 180

Query: 181 VESKKEEAEDFAQEMAKAKVPNYRFA 207
           VESKKEEAEDFAQEMAKAKVPNYRFA
Sbjct: 181 VESKKEEAEDFAQEMAKAKVPNYRFA 206

[Close]
BLAST of Csa1G039030 vs. NCBI nr
Match: gi|700208940|gb|KGN64036.1| (hypothetical protein Csa_1G039030 [Cucumis sativus])

HSP 1 Score: 422.9 bits (1086), Expect = 3.1e-115
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1 

Query: 1   MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIG 60
           MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIG
Sbjct: 1   MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIG 60

Query: 61  RDLERCGCSTGQMNVTLCYCAATIEDLEFTDKSDWVRRRNFSLEFECFEVQSSKRRRIQE 120
           RDLERCGCSTGQMNVTLCYCAATIEDLEFTDKSDWVRRRNFSLEFECFEVQSSKRRRIQE
Sbjct: 61  RDLERCGCSTGQMNVTLCYCAATIEDLEFTDKSDWVRRRNFSLEFECFEVQSSKRRRIQE 120

Query: 121 AITEPIMDSNSLTCTFSCDDILCHVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKRRE 180
           AITEPIMDSNSLTCTFSCDDILCHVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKRRE
Sbjct: 121 AITEPIMDSNSLTCTFSCDDILCHVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKRRE 180

Query: 181 VESKKEEAEDFAQEMAKAKVPNYRFA 207
           VESKKEEAEDFAQEMAKAKVPNYRFA
Sbjct: 181 VESKKEEAEDFAQEMAKAKVPNYRFA 206

The following BLAST results are available for this feature:
BLAST of Csa1G039030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVL0_CUCSA2.2e-115100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039030 PE=4 SV=1[more]
BLAST of Csa1G039030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208940|gb|KGN64036.1|3.1e-115100.00hypothetical protein Csa_1G039030 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012416CBP60
Vocabulary: Molecular Function
TermDefinition
GO:0005516calmodulin binding
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006950 response to stress
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU130764cucumber EST collection version 3.0transcribed_cluster
CU173359cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G039030.1Csa1G039030.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU173359CU173359transcribed_cluster
CU130764CU130764transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012416CALMODULIN-BINDING PROTEIN60PFAMPF07887Calmodulin_bindcoord: 70..127
score: 2.
NoneNo IPR availableunknownCoilCoilcoord: 145..179
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G039030CSPI01G05970Wild cucumber (PI 183967)cpicuB000
Csa1G039030Cucsa.113080Cucumber (Gy14) v1cgycuB137
Csa1G039030CsGy1G005700Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G039030Cucumber (Gy14) v2cgybcuB004
Csa1G039030Cucumber (Gy14) v2cgybcuB197
Csa1G039030Cucumber (Gy14) v2cgybcuB201
Csa1G039030Melon (DHL92) v3.6.1cumedB022
Csa1G039030Melon (DHL92) v3.6.1cumedB001
Csa1G039030Melon (DHL92) v3.6.1cumedB003
Csa1G039030Melon (DHL92) v3.6.1cumedB048
Csa1G039030Melon (DHL92) v3.6.1cumedB056
Csa1G039030Silver-seed gourdcarcuB0106
Csa1G039030Silver-seed gourdcarcuB0052
Csa1G039030Silver-seed gourdcarcuB0269
Csa1G039030Silver-seed gourdcarcuB0415
Csa1G039030Silver-seed gourdcarcuB0495
Csa1G039030Watermelon (97103) v2cuwmbB054
Csa1G039030Watermelon (97103) v2cuwmbB059
Csa1G039030Watermelon (97103) v2cuwmbB080
Csa1G039030Wax gourdcuwgoB010
Csa1G039030Wax gourdcuwgoB050
Csa1G039030Wax gourdcuwgoB069
Csa1G039030Wax gourdcuwgoB115
Csa1G039030Cucumber (Chinese Long) v2cucuB000
Csa1G039030Cucumber (Chinese Long) v2cucuB032
Csa1G039030Cucumber (Chinese Long) v2cucuB028
Csa1G039030Cucumber (Chinese Long) v2cucuB037
Csa1G039030Cucumber (Gy14) v1cgycuB227
Csa1G039030Cucumber (Gy14) v1cgycuB300
Csa1G039030Cucumber (Gy14) v1cgycuB403
Csa1G039030Cucurbita maxima (Rimu)cmacuB054
Csa1G039030Cucurbita maxima (Rimu)cmacuB088
Csa1G039030Cucurbita maxima (Rimu)cmacuB217
Csa1G039030Cucurbita maxima (Rimu)cmacuB403
Csa1G039030Cucurbita maxima (Rimu)cmacuB428
Csa1G039030Cucurbita maxima (Rimu)cmacuB684
Csa1G039030Cucurbita moschata (Rifu)cmocuB043
Csa1G039030Cucurbita moschata (Rifu)cmocuB077
Csa1G039030Cucurbita moschata (Rifu)cmocuB202
Csa1G039030Cucurbita moschata (Rifu)cmocuB391
Csa1G039030Cucurbita moschata (Rifu)cmocuB417
Csa1G039030Cucurbita moschata (Rifu)cmocuB674
Csa1G039030Cucurbita moschata (Rifu)cmocuB675
Csa1G039030Melon (DHL92) v3.5.1cumeB006
Csa1G039030Melon (DHL92) v3.5.1cumeB008
Csa1G039030Melon (DHL92) v3.5.1cumeB027
Csa1G039030Melon (DHL92) v3.5.1cumeB056
Csa1G039030Watermelon (Charleston Gray)cuwcgB057
Csa1G039030Watermelon (Charleston Gray)cuwcgB061
Csa1G039030Watermelon (Charleston Gray)cuwcgB083
Csa1G039030Watermelon (97103) v1cuwmB038
Csa1G039030Watermelon (97103) v1cuwmB062
Csa1G039030Watermelon (97103) v1cuwmB096
Csa1G039030Cucurbita pepo (Zucchini)cpecuB026
Csa1G039030Cucurbita pepo (Zucchini)cpecuB366
Csa1G039030Cucurbita pepo (Zucchini)cpecuB379
Csa1G039030Cucurbita pepo (Zucchini)cpecuB380
Csa1G039030Cucurbita pepo (Zucchini)cpecuB505
Csa1G039030Cucurbita pepo (Zucchini)cpecuB533
Csa1G039030Cucurbita pepo (Zucchini)cpecuB655
Csa1G039030Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G039030Bottle gourd (USVL1VR-Ls)culsiB053
Csa1G039030Bottle gourd (USVL1VR-Ls)culsiB072