Cucsa.113080 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.113080
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00953 : 1342555 .. 1342794 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGATCTGGAAAGATGCGGCTGCTCCACGGGCCAAATGAATGTGACTCTTTGCTACTGCGCTGCAACCATTGAGGATCTTGAATTCACCGATAAGTCAGACTGGGTTCGGAGAAGAAATTTCAGCTTGGAGTTTGAGTGTTTTGAGGTCCAATCTTCAAAAAGGCGTCGGATTCAGGAAGCCATAACTGAACCAATCATGGTCACATACGAAGCATTTACAATTCTTTTCCAAAAATAA

mRNA sequence

AGAGATCTGGAAAGATGCGGCTGCTCCACGGGCCAAATGAATGTGACTCTTTGCTACTGCGCTGCAACCATTGAGGATCTTGAATTCACCGATAAGTCAGACTGGGTTCGGAGAAGAAATTTCAGCTTGGAGTTTGAGTGTTTTGAGGTCCAATCTTCAAAAAGGCGTCGGATTCAGGAAGCCATAACTGAACCAATCATGGTCACATACGAAGCATTTACAATTCTTTTCCAAAAATAA

Coding sequence (CDS)

AGAGATCTGGAAAGATGCGGCTGCTCCACGGGCCAAATGAATGTGACTCTTTGCTACTGCGCTGCAACCATTGAGGATCTTGAATTCACCGATAAGTCAGACTGGGTTCGGAGAAGAAATTTCAGCTTGGAGTTTGAGTGTTTTGAGGTCCAATCTTCAAAAAGGCGTCGGATTCAGGAAGCCATAACTGAACCAATCATGGTCACATACGAAGCATTTACAATTCTTTTCCAAAAATAA

Protein sequence

RDLERCGCSTGQMNVTLCYCAATIEDLEFTDKSDWVRRRNFSLEFECFEVQSSKRRRIQEAITEPIMVTYEAFTILFQK*
Homology
[Close]
BLAST of Cucsa.113080 vs. TrEMBL
Match: A0A0A0LVL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039030 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.2e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1   RDLERCGCSTGQMNVTLCYCAATIEDLEFTDKSDWVRRRNFSLEFECFEVQSSKRRRIQE 60
           RDLERCGCSTGQMNVTLCYCAATIEDLEFTDKSDWVRRRNFSLEFECFEVQSSKRRRIQE
Sbjct: 61  RDLERCGCSTGQMNVTLCYCAATIEDLEFTDKSDWVRRRNFSLEFECFEVQSSKRRRIQE 120

Query: 61  AITEPIM 68
           AITEPIM
Sbjct: 121 AITEPIM 127

[Close]
BLAST of Cucsa.113080 vs. NCBI nr
Match: gi|700208940|gb|KGN64036.1| (hypothetical protein Csa_1G039030 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 3.2e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1   RDLERCGCSTGQMNVTLCYCAATIEDLEFTDKSDWVRRRNFSLEFECFEVQSSKRRRIQE 60
           RDLERCGCSTGQMNVTLCYCAATIEDLEFTDKSDWVRRRNFSLEFECFEVQSSKRRRIQE
Sbjct: 61  RDLERCGCSTGQMNVTLCYCAATIEDLEFTDKSDWVRRRNFSLEFECFEVQSSKRRRIQE 120

Query: 61  AITEPIM 68
           AITEPIM
Sbjct: 121 AITEPIM 127

[Close]
BLAST of Cucsa.113080 vs. NCBI nr
Match: gi|659066748|ref|XP_008459337.1| (PREDICTED: uncharacterized protein LOC103498471 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 3.5e-06
Identity = 32/59 (54.24%), Postives = 37/59 (62.71%), Query Frame = 1 

Query: 11  GQMNVTLCYCAATIEDLEFTDKSDWVRRRNFSLEFECFE-VQSSKRRRIQEAITEPIMV 69
           G+MNV L +CAATI DLEFTD S W+R R F L           K  RI+EAITEP +V
Sbjct: 173 GEMNVVLRHCAATIGDLEFTDNSSWIRSRKFRLGARIVSGSDRDKFPRIREAITEPFVV 231

[Close]
BLAST of Cucsa.113080 vs. NCBI nr
Match: gi|449439417|ref|XP_004137482.1| (PREDICTED: uncharacterized protein LOC101215184 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.5e-06
Identity = 32/59 (54.24%), Postives = 37/59 (62.71%), Query Frame = 1 

Query: 11  GQMNVTLCYCAATIEDLEFTDKSDWVRRRNFSLEFECFE-VQSSKRRRIQEAITEPIMV 69
           G+MNV L +CAATI DLEFTD S W+R R F L           K  RI+EAITEP +V
Sbjct: 173 GEMNVVLRHCAATIGDLEFTDNSSWIRSRKFRLGARIVSGSDRDKFPRIREAITEPFVV 231

The following BLAST results are available for this feature:
BLAST of Cucsa.113080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVL0_CUCSA2.2e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039030 PE=4 SV=1[more]
BLAST of Cucsa.113080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208940|gb|KGN64036.1|3.2e-31100.00hypothetical protein Csa_1G039030 [Cucumis sativus][more]
gi|659066748|ref|XP_008459337.1|3.5e-0654.24PREDICTED: uncharacterized protein LOC103498471 [Cucumis melo][more]
gi|449439417|ref|XP_004137482.1|3.5e-0654.24PREDICTED: uncharacterized protein LOC101215184 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012416CBP60
Vocabulary: Molecular Function
TermDefinition
GO:0005516calmodulin binding
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006950 response to stress
cellular_component GO:0005575 cellular_component
molecular_function GO:0005516 calmodulin binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.113080.1Cucsa.113080.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012416CALMODULIN-BINDING PROTEIN60PFAMPF07887Calmodulin_bindcoord: 10..68
score: 2.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.113080Csa1G039030Cucumber (Chinese Long) v2cgycuB137
Cucsa.113080CSPI01G05970Wild cucumber (PI 183967)cgycpiB137
Cucsa.113080CsaV3_1G005840Cucumber (Chinese Long) v3cgycucB143
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.113080Cucurbita pepo (Zucchini)cgycpeB0248
Cucsa.113080Cucurbita pepo (Zucchini)cgycpeB0254
Cucsa.113080Cucurbita pepo (Zucchini)cgycpeB0255
Cucsa.113080Cucurbita pepo (Zucchini)cgycpeB0257
Cucsa.113080Cucurbita pepo (Zucchini)cgycpeB0261
Cucsa.113080Cucurbita pepo (Zucchini)cgycpeB0265
Cucsa.113080Bottle gourd (USVL1VR-Ls)cgylsiB148
Cucsa.113080Bottle gourd (USVL1VR-Ls)cgylsiB154
Cucsa.113080Bottle gourd (USVL1VR-Ls)cgylsiB157
Cucsa.113080Melon (DHL92) v3.6.1cgymedB152
Cucsa.113080Melon (DHL92) v3.6.1cgymedB153
Cucsa.113080Melon (DHL92) v3.6.1cgymedB156
Cucsa.113080Melon (DHL92) v3.6.1cgymedB160
Cucsa.113080Melon (DHL92) v3.6.1cgymedB161
Cucsa.113080Silver-seed gourdcarcgyB0060
Cucsa.113080Silver-seed gourdcarcgyB0118
Cucsa.113080Silver-seed gourdcarcgyB0305
Cucsa.113080Silver-seed gourdcarcgyB0448
Cucsa.113080Silver-seed gourdcarcgyB0531
Cucsa.113080Cucumber (Chinese Long) v3cgycucB144
Cucsa.113080Cucumber (Chinese Long) v3cgycucB149
Cucsa.113080Watermelon (97103) v2cgywmbB156
Cucsa.113080Watermelon (97103) v2cgywmbB158
Cucsa.113080Watermelon (97103) v2cgywmbB161
Cucsa.113080Wax gourdcgywgoB174
Cucsa.113080Wax gourdcgywgoB180
Cucsa.113080Wax gourdcgywgoB184
Cucsa.113080Wax gourdcgywgoB188
Cucsa.113080Cucumber (Gy14) v1cgycgyB060
Cucsa.113080Cucumber (Gy14) v1cgycgyB062
Cucsa.113080Cucumber (Gy14) v1cgycgyB064
Cucsa.113080Cucumber (Gy14) v1cgycgyB066
Cucsa.113080Cucurbita maxima (Rimu)cgycmaB0257
Cucsa.113080Cucurbita maxima (Rimu)cgycmaB0260
Cucsa.113080Cucurbita maxima (Rimu)cgycmaB0264
Cucsa.113080Cucurbita maxima (Rimu)cgycmaB0266
Cucsa.113080Cucurbita maxima (Rimu)cgycmaB0269
Cucsa.113080Cucurbita maxima (Rimu)cgycmaB0271
Cucsa.113080Cucurbita maxima (Rimu)cgycmaB0275
Cucsa.113080Cucurbita moschata (Rifu)cgycmoB0256
Cucsa.113080Cucurbita moschata (Rifu)cgycmoB0259
Cucsa.113080Cucurbita moschata (Rifu)cgycmoB0262
Cucsa.113080Cucurbita moschata (Rifu)cgycmoB0265
Cucsa.113080Cucurbita moschata (Rifu)cgycmoB0267
Cucsa.113080Cucurbita moschata (Rifu)cgycmoB0271
Cucsa.113080Wild cucumber (PI 183967)cgycpiB138
Cucsa.113080Wild cucumber (PI 183967)cgycpiB142
Cucsa.113080Wild cucumber (PI 183967)cgycpiB143
Cucsa.113080Cucumber (Chinese Long) v2cgycuB138
Cucsa.113080Cucumber (Chinese Long) v2cgycuB142
Cucsa.113080Cucumber (Chinese Long) v2cgycuB143
Cucsa.113080Melon (DHL92) v3.5.1cgymeB152
Cucsa.113080Melon (DHL92) v3.5.1cgymeB153
Cucsa.113080Melon (DHL92) v3.5.1cgymeB156
Cucsa.113080Melon (DHL92) v3.5.1cgymeB161
Cucsa.113080Watermelon (Charleston Gray)cgywcgB160
Cucsa.113080Watermelon (Charleston Gray)cgywcgB162
Cucsa.113080Watermelon (Charleston Gray)cgywcgB166
Cucsa.113080Watermelon (97103) v1cgywmB161
Cucsa.113080Watermelon (97103) v1cgywmB163
Cucsa.113080Watermelon (97103) v1cgywmB168