CsGy1G005700 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G005700
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 3706093 .. 3708526 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGCAAGTTCGCCGTCGACCACCACGGATTTCTCTAAGCCGTCCAATTCTCTCGATCACTTGCTGTAAATTCGCCGTCGAACACCACGATTTTTACGCAATTGGCATCGACGACGGCCATACGCGGCGGTTGACTTTCAACATTTGGATAGTCGCCGCCGTTGTTGATTTCATCGGGGTGGTCGACGGAAAATTTGCAGCAGGTGATTGAGAGGATTGGATGGGTGAGGATTTCAGTGGTAGCATTGTGAAAGAGAGATCTGGAAAGATGCGGCTGCTCCACGGGCCAAATGAATGTGACTCTTTGCTACTGCGCTGCAACCATTGAGGATCTTGAATTCACCGATAAGTCAGACTGGGTTCGGAGAAGAAATTTCAGCTTGGAGTTTGAGTGTTTTGAGGTCCAATCTTCAAAAAGGCGTCGGATTCAGGAAGCCATAACTGAACCAATCATGGTCACATACGAAGCATTTACAATTCTTTTCCAAAAATAAAATATCTGATTGGCTGACGATGGGATGGGACCCGACCAATTATCGGAAACCAAATCAATTTTGATTTATTTTTTGCATTGCTGTCGAGGATTCGAATTCTCTTACTTGCACGTTTTCTTGCGATGATATTCTCTGGTACTCACTCATCGGAGGATAAAGTTCGCTTCCGTTAAGGTACTTTCCAGTGTAATCTTTTTCCTCTCCCGGTAGACAAAAGCAAAGTATTGCTCAATTTTTTGGCTTGTCGCGATGAATTCGTTGAATTGTATTATCCTTCTTTGATTGGACCTGTAATTGTTTGTCAGCAGGAAAGGGATGGAGGTTCTTTACTTTTGGCCCAGCCGTATACCTCTTTTTCAAAATTGAAATGGACATTTTTTTTAAAAAAAGTCCCATTTATGAATGAAAACTATAGTTGGGTTTTCCCTTTTTATCCTTTTAGCTCCCTATTAGCTCCCTTATGGGAATTTCTTCATGGTCATGCTTAAGCAATCGCTGCAAATAATTATGTGTTTTACTGTTTTCTGATGGTTCTAGATGTTTAGGGTTTAGGGATTGAGACAAGATGTGGACGGGTATATTTTCTGTCTACTTGCTTAGAGTTTCTCTCGTGATGCGAGTATGGAAATTAAAATTATTAGAAGTGGTTGCTTCAAGTTGTAGGAACTTGGAAGTATCCTTCTTGTTGATCCTCATAATTTCACATTCATTGGCTCAGGTTTGGACAGAAAGTCCCTTTTTTGTTAGAATAAGAAAAGGCATTAATGTTCCCAAGTACTGTGTCCTGTACATTTAGGCAAATGTGATAGATTTCTGCCTTTTTCGGCTCCTTTAATCTTTTTCTATAATTGGTATCATTTTTAATTATGCAGCTAAAGAAAGAGAACACAGTAATAGATTCTCGGCCTAAAAGCTTTTAACTGATGAGGGCAAGTTTCACGCTGAATGTTTTTCCTCTTTTAATGTGCAGAATGTGATGGGGTGTCTTTATTCTTTAATGTGTTCAATGTTTTTTCATCTCCTCAACAGTTATTTGGATGAATTTGGTGAATCGAGATTGTTACATACTGTAACTTTGTATTCCTTTTGCAGGCAGTCAGTTCATCTACATTTGTAGGCATTTGCATTATCATCCAGATGAACTTCGTGACCTTTAAATTTGTCTGATGCAGCCATGTGAACTCCTTATCAGAAGCACATAAGGAAGGCAAGCTACGCATTGAAAGCTTGGAGAAGGAATTGACAAACTGCACCGAGGAAATAGGTACAGGAAATTCTCTGTATAGTAATCAGTTGGAGACCACTTCTAAGTTGGTTATGGTGAAGTTTTCTTCTAAAATGTTGGCCTTGGCATAGTTTTAATAGATTTTATTTGTTGGCTGCCGGTTATTCTGAGTTATGATCCTGATGAAGTTACTTTTTGTTGGTGCATTGTATTTTTGTCTACTCCGTACCTACTTTCCTTCCAAGTTTTAAATAACAACCCTTCCCTGTCCTAAGCTGGATTACTATCTCATGACATATCTGGTCCTAATGTAAGATTTTCAAGGAGACCCCATTTGCTTTTTCCAAAATTTGTGCTGCCTTTAGAATCAAATTGGTTCTTCTAGGCAACATGATATCTGCTTTATTTGAAACCGCCAGGTTTTAACTTTCTAGTGATTGACACTTGACAGGAGGAGTTAAGAGAAGAGAAGTTGAAAGCAAAAAAGAAGAAGCAGAGGACTTTGCTCAAGAAATGGCTAAAGCTAAGGTACCAAATTACCGATTTGCTTGAAAAAGAGTGCAAGCCCGGGGCTTGCATCGAACTGGGCGTCTTTACTGAGGAAACACACATGTATTTTTTGTTGATGATGAGGAGTTGTGGTATAATGTTTTGCTATTTGTTTCTTCAATCAGGAATATGAAGTAGATTTGCTTTGCCACAGTTCTTCCTGA

mRNA sequence

ATGCTGCAAGTTCGCCGTCGACCACCACGGATTTCTCTAAGCCGTCCAATTCTCTCGATCACTTGCTGTAAATTCGCCGTCGAACACCACGATTTTTACGCAATTGGCATCGACGACGGCCATACGCGGCGGTTGACTTTCAACATTTGGATAGTCGCCGCCGTTGTTGATTTCATCGGGGTGGTCGACGGAAAATTTGCAGCAGACAAAAGCAAAGTATTGCTCAATTTTTTGGCTTGTCGCGATGAATTCGTTGAATTGTATTATCCTTCTTTGATTGGACCTGTTTGGACAGAAAGTCCCTTTTTTGTTAGAATAAGAAAAGGCATTAATGTTCCCAACCATGTGAACTCCTTATCAGAAGCACATAAGGAAGGCAAGCTACGCATTGAAAGCTTGGAGAAGGAATTGACAAACTGCACCGAGGAAATAGGAGGAGTTAAGAGAAGAGAAGTTGAAAGCAAAAAAGAAGAAGCAGAGGACTTTGCTCAAGAAATGGCTAAAGCTAAGGAATATGAAGTAGATTTGCTTTGCCACAGTTCTTCCTGA

Coding sequence (CDS)

ATGCTGCAAGTTCGCCGTCGACCACCACGGATTTCTCTAAGCCGTCCAATTCTCTCGATCACTTGCTGTAAATTCGCCGTCGAACACCACGATTTTTACGCAATTGGCATCGACGACGGCCATACGCGGCGGTTGACTTTCAACATTTGGATAGTCGCCGCCGTTGTTGATTTCATCGGGGTGGTCGACGGAAAATTTGCAGCAGACAAAAGCAAAGTATTGCTCAATTTTTTGGCTTGTCGCGATGAATTCGTTGAATTGTATTATCCTTCTTTGATTGGACCTGTTTGGACAGAAAGTCCCTTTTTTGTTAGAATAAGAAAAGGCATTAATGTTCCCAACCATGTGAACTCCTTATCAGAAGCACATAAGGAAGGCAAGCTACGCATTGAAAGCTTGGAGAAGGAATTGACAAACTGCACCGAGGAAATAGGAGGAGTTAAGAGAAGAGAAGTTGAAAGCAAAAAAGAAGAAGCAGAGGACTTTGCTCAAGAAATGGCTAAAGCTAAGGAATATGAAGTAGATTTGCTTTGCCACAGTTCTTCCTGA

Protein sequence

MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIGVVDGKFAADKSKVLLNFLACRDEFVELYYPSLIGPVWTESPFFVRIRKGINVPNHVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKRREVESKKEEAEDFAQEMAKAKEYEVDLLCHSSS
Homology
[Close]
BLAST of CsGy1G005700 vs. NCBI nr
Match: KGN64036.1 (hypothetical protein Csa_1G039030 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 1.4e-51
Identity = 124/201 (61.69%), Postives = 132/201 (65.67%), Query Frame = 0 

Query: 1   MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIG 60
           MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIG
Sbjct: 1   MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIG 60

Query: 61  VVDGKFAADKSKVLLNFLACRDEFVELYYPSLIGPVWTESPFFV--------------RI 120
               +      ++ +    C     +L +       W     F               RI
Sbjct: 61  RDLERCGCSTGQMNVTLCYCAATIEDLEFTDKSD--WVRRRNFSLEFECFEVQSSKRRRI 120

Query: 121 RKGINVP-----------------NHVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKR 171
           ++ I  P                  HVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKR
Sbjct: 121 QEAITEPIMDSNSLTCTFSCDDILCHVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKR 180

[Close]
BLAST of CsGy1G005700 vs. NCBI nr
Match: XP_004137423.1 (PREDICTED: protein Hook homolog 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-04
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 110 INVPNHVNSLSEAHKEGKLRIESLEKELTNCTEEI 145
           I +  HVNSLSEA KE KLRIE+LEKELTNCT+EI
Sbjct: 45  IRLELHVNSLSEARKEDKLRIENLEKELTNCTQEI 79

[Close]
BLAST of CsGy1G005700 vs. NCBI nr
Match: KGN64037.1 (hypothetical protein Csa_1G039040 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-04
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 110 INVPNHVNSLSEAHKEGKLRIESLEKELTNCTEEI 145
           I +  HVNSLSEA KE KLRIE+LEKELTNCT+EI
Sbjct: 101 IRLELHVNSLSEARKEDKLRIENLEKELTNCTQEI 135

[Close]
BLAST of CsGy1G005700 vs. TrEMBL
Match: tr|A0A0A0LVL0|A0A0A0LVL0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039030 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 9.5e-52
Identity = 124/201 (61.69%), Postives = 132/201 (65.67%), Query Frame = 0 

Query: 1   MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIG 60
           MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIG
Sbjct: 1   MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIG 60

Query: 61  VVDGKFAADKSKVLLNFLACRDEFVELYYPSLIGPVWTESPFFV--------------RI 120
               +      ++ +    C     +L +       W     F               RI
Sbjct: 61  RDLERCGCSTGQMNVTLCYCAATIEDLEFTDKSD--WVRRRNFSLEFECFEVQSSKRRRI 120

Query: 121 RKGINVP-----------------NHVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKR 171
           ++ I  P                  HVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKR
Sbjct: 121 QEAITEPIMDSNSLTCTFSCDDILCHVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKR 180

[Close]
BLAST of CsGy1G005700 vs. TrEMBL
Match: tr|A0A0A0LTG3|A0A0A0LTG3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039040 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.5e-04
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 110 INVPNHVNSLSEAHKEGKLRIESLEKELTNCTEEI 145
           I +  HVNSLSEA KE KLRIE+LEKELTNCT+EI
Sbjct: 101 IRLELHVNSLSEARKEDKLRIENLEKELTNCTQEI 135

The following BLAST results are available for this feature:
BLAST of CsGy1G005700 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64036.11.4e-5161.69hypothetical protein Csa_1G039030 [Cucumis sativus][more]
XP_004137423.13.8e-0477.14PREDICTED: protein Hook homolog 1 isoform X2 [Cucumis sativus][more]
KGN64037.13.8e-0477.14hypothetical protein Csa_1G039040 [Cucumis sativus][more]
BLAST of CsGy1G005700 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G005700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G005700 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVL0|A0A0A0LVL0_CUCSA9.5e-5261.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039030 PE=4 SV=1[more]
tr|A0A0A0LTG3|A0A0A0LTG3_CUCSA2.5e-0477.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039040 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G005700.1CsGy1G005700.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 116..150
NoneNo IPR availableCOILSCoilCoilcoord: 152..172

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G005700Csa1G039030Cucumber (Chinese Long) v2cgybcuB001
CsGy1G005700CSPI01G05970Wild cucumber (PI 183967)cgybcpiB001
CsGy1G005700CsaV3_1G005840Cucumber (Chinese Long) v3cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G005700Watermelon (97103) v2cgybwmbB053
CsGy1G005700Watermelon (97103) v2cgybwmbB057
CsGy1G005700Watermelon (97103) v2cgybwmbB078
CsGy1G005700Wax gourdcgybwgoB047
CsGy1G005700Wax gourdcgybwgoB066
CsGy1G005700Wax gourdcgybwgoB107
CsGy1G005700Cucumber (Gy14) v2cgybcgybB002
CsGy1G005700Cucumber (Gy14) v2cgybcgybB027
CsGy1G005700Cucumber (Gy14) v2cgybcgybB037
CsGy1G005700Cucurbita maxima (Rimu)cgybcmaB009
CsGy1G005700Cucurbita maxima (Rimu)cgybcmaB030
CsGy1G005700Cucurbita maxima (Rimu)cgybcmaB073
CsGy1G005700Cucurbita maxima (Rimu)cgybcmaB097
CsGy1G005700Cucurbita maxima (Rimu)cgybcmaB105
CsGy1G005700Cucurbita maxima (Rimu)cgybcmaB129
CsGy1G005700Cucurbita moschata (Rifu)cgybcmoB010
CsGy1G005700Cucurbita moschata (Rifu)cgybcmoB029
CsGy1G005700Cucurbita moschata (Rifu)cgybcmoB067
CsGy1G005700Cucurbita moschata (Rifu)cgybcmoB092
CsGy1G005700Cucurbita moschata (Rifu)cgybcmoB099
CsGy1G005700Cucurbita moschata (Rifu)cgybcmoB120
CsGy1G005700Cucurbita pepo (Zucchini)cgybcpeB009
CsGy1G005700Cucurbita pepo (Zucchini)cgybcpeB059
CsGy1G005700Cucurbita pepo (Zucchini)cgybcpeB060
CsGy1G005700Cucurbita pepo (Zucchini)cgybcpeB069
CsGy1G005700Cucurbita pepo (Zucchini)cgybcpeB098
CsGy1G005700Cucurbita pepo (Zucchini)cgybcpeB128
CsGy1G005700Cucumber (Chinese Long) v2cgybcuB005
CsGy1G005700Cucumber (Chinese Long) v2cgybcuB034
CsGy1G005700Cucumber (Chinese Long) v2cgybcuB042
CsGy1G005700Bottle gourd (USVL1VR-Ls)cgyblsiB079
CsGy1G005700Bottle gourd (USVL1VR-Ls)cgyblsiB018
CsGy1G005700Bottle gourd (USVL1VR-Ls)cgyblsiB048
CsGy1G005700Bottle gourd (USVL1VR-Ls)cgyblsiB069
CsGy1G005700Melon (DHL92) v3.5.1cgybmeB058
CsGy1G005700Melon (DHL92) v3.5.1cgybmeB005
CsGy1G005700Melon (DHL92) v3.5.1cgybmeB022
CsGy1G005700Melon (DHL92) v3.5.1cgybmeB052
CsGy1G005700Melon (DHL92) v3.6.1cgybmedB004
CsGy1G005700Melon (DHL92) v3.6.1cgybmedB020
CsGy1G005700Melon (DHL92) v3.6.1cgybmedB046
CsGy1G005700Watermelon (Charleston Gray)cgybwcgB053
CsGy1G005700Watermelon (Charleston Gray)cgybwcgB058
CsGy1G005700Watermelon (Charleston Gray)cgybwcgB087
CsGy1G005700Watermelon (Charleston Gray)cgybwcgB080
CsGy1G005700Watermelon (97103) v1cgybwmB009
CsGy1G005700Watermelon (97103) v1cgybwmB037
CsGy1G005700Watermelon (97103) v1cgybwmB064
CsGy1G005700Watermelon (97103) v1cgybwmB096
CsGy1G005700Wild cucumber (PI 183967)cgybcpiB004
CsGy1G005700Wild cucumber (PI 183967)cgybcpiB029
CsGy1G005700Wild cucumber (PI 183967)cgybcpiB039
CsGy1G005700Silver-seed gourdcarcgybB0052
CsGy1G005700Silver-seed gourdcarcgybB0106
CsGy1G005700Silver-seed gourdcarcgybB0256
CsGy1G005700Silver-seed gourdcarcgybB0393
CsGy1G005700Cucumber (Chinese Long) v3cgybcucB003
CsGy1G005700Cucumber (Chinese Long) v3cgybcucB037