CsGy1G005700.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G005700.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 3706093 .. 3708526 (-)
Sequence length	549

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCAAGTTCGCCGTCGACCACCACGGATTTCTCTAAGCCGTCCAATTCTCTCGATCACTTGCTGTAAATTCGCCGTCGAACACCACGATTTTTACGCAATTGGCATCGACGACGGCCATACGCGGCGGTTGACTTTCAACATTTGGATAGTCGCCGCCGTTGTTGATTTCATCGGGGTGGTCGACGGAAAATTTGCAGCAGGTGATTGAGAGGATTGGATGGGTGAGGATTTCAGTGGTAGCATTGTGAAAGAGAGATCTGGAAAGATGCGGCTGCTCCACGGGCCAAATGAATGTGACTCTTTGCTACTGCGCTGCAACCATTGAGGATCTTGAATTCACCGATAAGTCAGACTGGGTTCGGAGAAGAAATTTCAGCTTGGAGTTTGAGTGTTTTGAGGTCCAATCTTCAAAAAGGCGTCGGATTCAGGAAGCCATAACTGAACCAATCATGGTCACATACGAAGCATTTACAATTCTTTTCCAAAAATAAAATATCTGATTGGCTGACGATGGGATGGGACCCGACCAATTATCGGAAACCAAATCAATTTTGATTTATTTTTTGCATTGCTGTCGAGGATTCGAATTCTCTTACTTGCACGTTTTCTTGCGATGATATTCTCTGGTACTCACTCATCGGAGGATAAAGTTCGCTTCCGTTAAGGTACTTTCCAGTGTAATCTTTTTCCTCTCCCGGTAGACAAAAGCAAAGTATTGCTCAATTTTTTGGCTTGTCGCGATGAATTCGTTGAATTGTATTATCCTTCTTTGATTGGACCTGTAATTGTTTGTCAGCAGGAAAGGGATGGAGGTTCTTTACTTTTGGCCCAGCCGTATACCTCTTTTTCAAAATTGAAATGGACATTTTTTTTAAAAAAAGTCCCATTTATGAATGAAAACTATAGTTGGGTTTTCCCTTTTTATCCTTTTAGCTCCCTATTAGCTCCCTTATGGGAATTTCTTCATGGTCATGCTTAAGCAATCGCTGCAAATAATTATGTGTTTTACTGTTTTCTGATGGTTCTAGATGTTTAGGGTTTAGGGATTGAGACAAGATGTGGACGGGTATATTTTCTGTCTACTTGCTTAGAGTTTCTCTCGTGATGCGAGTATGGAAATTAAAATTATTAGAAGTGGTTGCTTCAAGTTGTAGGAACTTGGAAGTATCCTTCTTGTTGATCCTCATAATTTCACATTCATTGGCTCAGGTTTGGACAGAAAGTCCCTTTTTTGTTAGAATAAGAAAAGGCATTAATGTTCCCAAGTACTGTGTCCTGTACATTTAGGCAAATGTGATAGATTTCTGCCTTTTTCGGCTCCTTTAATCTTTTTCTATAATTGGTATCATTTTTAATTATGCAGCTAAAGAAAGAGAACACAGTAATAGATTCTCGGCCTAAAAGCTTTTAACTGATGAGGGCAAGTTTCACGCTGAATGTTTTTCCTCTTTTAATGTGCAGAATGTGATGGGGTGTCTTTATTCTTTAATGTGTTCAATGTTTTTTCATCTCCTCAACAGTTATTTGGATGAATTTGGTGAATCGAGATTGTTACATACTGTAACTTTGTATTCCTTTTGCAGGCAGTCAGTTCATCTACATTTGTAGGCATTTGCATTATCATCCAGATGAACTTCGTGACCTTTAAATTTGTCTGATGCAGCCATGTGAACTCCTTATCAGAAGCACATAAGGAAGGCAAGCTACGCATTGAAAGCTTGGAGAAGGAATTGACAAACTGCACCGAGGAAATAGGTACAGGAAATTCTCTGTATAGTAATCAGTTGGAGACCACTTCTAAGTTGGTTATGGTGAAGTTTTCTTCTAAAATGTTGGCCTTGGCATAGTTTTAATAGATTTTATTTGTTGGCTGCCGGTTATTCTGAGTTATGATCCTGATGAAGTTACTTTTTGTTGGTGCATTGTATTTTTGTCTACTCCGTACCTACTTTCCTTCCAAGTTTTAAATAACAACCCTTCCCTGTCCTAAGCTGGATTACTATCTCATGACATATCTGGTCCTAATGTAAGATTTTCAAGGAGACCCCATTTGCTTTTTCCAAAATTTGTGCTGCCTTTAGAATCAAATTGGTTCTTCTAGGCAACATGATATCTGCTTTATTTGAAACCGCCAGGTTTTAACTTTCTAGTGATTGACACTTGACAGGAGGAGTTAAGAGAAGAGAAGTTGAAAGCAAAAAAGAAGAAGCAGAGGACTTTGCTCAAGAAATGGCTAAAGCTAAGGTACCAAATTACCGATTTGCTTGAAAAAGAGTGCAAGCCCGGGGCTTGCATCGAACTGGGCGTCTTTACTGAGGAAACACACATGTATTTTTTGTTGATGATGAGGAGTTGTGGTATAATGTTTTGCTATTTGTTTCTTCAATCAGGAATATGAAGTAGATTTGCTTTGCCACAGTTCTTCCTGA

mRNA sequence

ATGCTGCAAGTTCGCCGTCGACCACCACGGATTTCTCTAAGCCGTCCAATTCTCTCGATCACTTGCTGTAAATTCGCCGTCGAACACCACGATTTTTACGCAATTGGCATCGACGACGGCCATACGCGGCGGTTGACTTTCAACATTTGGATAGTCGCCGCCGTTGTTGATTTCATCGGGGTGGTCGACGGAAAATTTGCAGCAGACAAAAGCAAAGTATTGCTCAATTTTTTGGCTTGTCGCGATGAATTCGTTGAATTGTATTATCCTTCTTTGATTGGACCTGTTTGGACAGAAAGTCCCTTTTTTGTTAGAATAAGAAAAGGCATTAATGTTCCCAACCATGTGAACTCCTTATCAGAAGCACATAAGGAAGGCAAGCTACGCATTGAAAGCTTGGAGAAGGAATTGACAAACTGCACCGAGGAAATAGGAGGAGTTAAGAGAAGAGAAGTTGAAAGCAAAAAAGAAGAAGCAGAGGACTTTGCTCAAGAAATGGCTAAAGCTAAGGAATATGAAGTAGATTTGCTTTGCCACAGTTCTTCCTGA

Coding sequence (CDS)

ATGCTGCAAGTTCGCCGTCGACCACCACGGATTTCTCTAAGCCGTCCAATTCTCTCGATCACTTGCTGTAAATTCGCCGTCGAACACCACGATTTTTACGCAATTGGCATCGACGACGGCCATACGCGGCGGTTGACTTTCAACATTTGGATAGTCGCCGCCGTTGTTGATTTCATCGGGGTGGTCGACGGAAAATTTGCAGCAGACAAAAGCAAAGTATTGCTCAATTTTTTGGCTTGTCGCGATGAATTCGTTGAATTGTATTATCCTTCTTTGATTGGACCTGTTTGGACAGAAAGTCCCTTTTTTGTTAGAATAAGAAAAGGCATTAATGTTCCCAACCATGTGAACTCCTTATCAGAAGCACATAAGGAAGGCAAGCTACGCATTGAAAGCTTGGAGAAGGAATTGACAAACTGCACCGAGGAAATAGGAGGAGTTAAGAGAAGAGAAGTTGAAAGCAAAAAAGAAGAAGCAGAGGACTTTGCTCAAGAAATGGCTAAAGCTAAGGAATATGAAGTAGATTTGCTTTGCCACAGTTCTTCCTGA

Protein sequence

MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIGVVDGKFAADKSKVLLNFLACRDEFVELYYPSLIGPVWTESPFFVRIRKGINVPNHVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKRREVESKKEEAEDFAQEMAKAKEYEVDLLCHSSS

Homology

[Close]

BLAST of CsGy1G005700.1 vs. NCBI nr
Match: KGN64036.1 (hypothetical protein Csa_1G039030 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 1.4e-51
Identity = 124/201 (61.69%), Postives = 132/201 (65.67%), Query Frame = 0


Query: 1   MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIG 60
           MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIG
Sbjct: 1   MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIG 60

Query: 61  VVDGKFAADKSKVLLNFLACRDEFVELYYPSLIGPVWTESPFFV--------------RI 120
               +      ++ +    C     +L +       W     F               RI
Sbjct: 61  RDLERCGCSTGQMNVTLCYCAATIEDLEFTDKSD--WVRRRNFSLEFECFEVQSSKRRRI 120

Query: 121 RKGINVP-----------------NHVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKR 171
           ++ I  P                  HVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKR
Sbjct: 121 QEAITEPIMDSNSLTCTFSCDDILCHVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKR 180

[Close]

BLAST of CsGy1G005700.1 vs. NCBI nr
Match: XP_004137423.1 (PREDICTED: protein Hook homolog 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-04
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 110 INVPNHVNSLSEAHKEGKLRIESLEKELTNCTEEI 145
           I +  HVNSLSEA KE KLRIE+LEKELTNCT+EI
Sbjct: 45  IRLELHVNSLSEARKEDKLRIENLEKELTNCTQEI 79

[Close]

BLAST of CsGy1G005700.1 vs. NCBI nr
Match: KGN64037.1 (hypothetical protein Csa_1G039040 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-04
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 110 INVPNHVNSLSEAHKEGKLRIESLEKELTNCTEEI 145
           I +  HVNSLSEA KE KLRIE+LEKELTNCT+EI
Sbjct: 101 IRLELHVNSLSEARKEDKLRIENLEKELTNCTQEI 135

[Close]

BLAST of CsGy1G005700.1 vs. TrEMBL
Match: tr|A0A0A0LVL0|A0A0A0LVL0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039030 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 9.5e-52
Identity = 124/201 (61.69%), Postives = 132/201 (65.67%), Query Frame = 0


Query: 1   MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIG 60
           MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIG
Sbjct: 1   MLQVRRRPPRISLSRPILSITCCKFAVEHHDFYAIGIDDGHTRRLTFNIWIVAAVVDFIG 60

Query: 61  VVDGKFAADKSKVLLNFLACRDEFVELYYPSLIGPVWTESPFFV--------------RI 120
               +      ++ +    C     +L +       W     F               RI
Sbjct: 61  RDLERCGCSTGQMNVTLCYCAATIEDLEFTDKSD--WVRRRNFSLEFECFEVQSSKRRRI 120

Query: 121 RKGINVP-----------------NHVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKR 171
           ++ I  P                  HVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKR
Sbjct: 121 QEAITEPIMDSNSLTCTFSCDDILCHVNSLSEAHKEGKLRIESLEKELTNCTEEIGGVKR 180

[Close]

BLAST of CsGy1G005700.1 vs. TrEMBL
Match: tr|A0A0A0LTG3|A0A0A0LTG3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039040 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.5e-04
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 110 INVPNHVNSLSEAHKEGKLRIESLEKELTNCTEEI 145
           I +  HVNSLSEA KE KLRIE+LEKELTNCT+EI
Sbjct: 101 IRLELHVNSLSEARKEDKLRIENLEKELTNCTQEI 135

The following BLAST results are available for this feature:

BLAST of CsGy1G005700.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64036.1	1.4e-51	61.69	hypothetical protein Csa_1G039030 [Cucumis sativus]	[more]
XP_004137423.1	3.8e-04	77.14	PREDICTED: protein Hook homolog 1 isoform X2 [Cucumis sativus]	[more]
KGN64037.1	3.8e-04	77.14	hypothetical protein Csa_1G039040 [Cucumis sativus]	[more]

BLAST of CsGy1G005700.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G005700.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G005700.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LVL0\|A0A0A0LVL0_CUCSA	9.5e-52	61.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039030 PE=4 SV=1	[more]
tr\|A0A0A0LTG3\|A0A0A0LTG3_CUCSA	2.5e-04	77.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039040 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G005700	CsGy1G005700	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G005700.1	CsGy1G005700.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G005700.1.CDS.6	CsGy1G005700.1.CDS.6	CDS
CsGy1G005700.1.CDS.5	CsGy1G005700.1.CDS.5	CDS
CsGy1G005700.1.CDS.4	CsGy1G005700.1.CDS.4	CDS
CsGy1G005700.1.CDS.3	CsGy1G005700.1.CDS.3	CDS
CsGy1G005700.1.CDS.2	CsGy1G005700.1.CDS.2	CDS
CsGy1G005700.1.CDS.1	CsGy1G005700.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G005700.1.exon.6	CsGy1G005700.1.exon.6	exon
CsGy1G005700.1.exon.5	CsGy1G005700.1.exon.5	exon
CsGy1G005700.1.exon.4	CsGy1G005700.1.exon.4	exon
CsGy1G005700.1.exon.3	CsGy1G005700.1.exon.3	exon
CsGy1G005700.1.exon.2	CsGy1G005700.1.exon.2	exon
CsGy1G005700.1.exon.1	CsGy1G005700.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 116..150
None	No IPR available	COILS	Coil	Coil	coord: 152..172