Csa1G030650 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G030650
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 3203619 .. 3204008 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTTTCCACCTCAGCCTTAAACCAGCCACTATTTCTCTCAGTTTTGCCAAAGGCCCTTGAAAATACATTGTTACGAAAAGGGCTGATTTATAGCAATATTTTCAACGTGGTAGACGATGGTAAATCCACTAGCTTTTTGTCCAATTTATGGATTGGATCTTCCCCTTCAAGGGAACCTCTCCTAGGCTTTTCTTCTTATTTTTCAGGAAAGAAGGCACTATTTCTAACCATGGGAACCGTAGTGATGCCTGTTGGATCTTGTGTTCTGAGGAGAAACTTAAAAGAAGAGCAGTTTGTTGACTTGCCAAGCATATACTTTCCTAGTGGCAGTTTAAGAAGACTATTGGAAGTGGAAGAAAGAGACAGAAGGCACCTTCTCATCTGA

mRNA sequence

ATGGCACTTTCCACCTCAGCCTTAAACCAGCCACTATTTCTCTCAGTTTTGCCAAAGGCCCTTGAAAATACATTGTTACGAAAAGGGCTGATTTATAGCAATATTTTCAACGTGGTAGACGATGGAAAGAAGGCACTATTTCTAACCATGGGAACCGTAGTGATGCCTGTTGGATCTTGTGTTCTGAGGAGAAACTTAAAAGAAGAGCAGTTTGTTGACTTGCCAAGCATATACTTTCCTAGTGGCAGTTTAAGAAGACTATTGGAAGTGGAAGAAAGAGACAGAAGGCACCTTCTCATCTGA

Coding sequence (CDS)

ATGGCACTTTCCACCTCAGCCTTAAACCAGCCACTATTTCTCTCAGTTTTGCCAAAGGCCCTTGAAAATACATTGTTACGAAAAGGGCTGATTTATAGCAATATTTTCAACGTGGTAGACGATGGAAAGAAGGCACTATTTCTAACCATGGGAACCGTAGTGATGCCTGTTGGATCTTGTGTTCTGAGGAGAAACTTAAAAGAAGAGCAGTTTGTTGACTTGCCAAGCATATACTTTCCTAGTGGCAGTTTAAGAAGACTATTGGAAGTGGAAGAAAGAGACAGAAGGCACCTTCTCATCTGA

Protein sequence

MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGKKALFLTMGTVVMPVGSCVLRRNLKEEQFVDLPSIYFPSGSLRRLLEVEERDRRHLLI*
Homology
[Close]
BLAST of Csa1G030650 vs. TrEMBL
Match: A0A0A0LSH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G030650 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.8e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGKKALFLTMGTVVMPVGSC 60
           MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGKKALFLTMGTVVMPVGSC
Sbjct: 1   MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGKKALFLTMGTVVMPVGSC 60

Query: 61  VLRRNLKEEQFVDLPSIYFPSGSLRRLLEVEERDRRHLLI 101
           VLRRNLKEEQFVDLPSIYFPSGSLRRLLEVEERDRRHLLI
Sbjct: 61  VLRRNLKEEQFVDLPSIYFPSGSLRRLLEVEERDRRHLLI 100

[Close]
BLAST of Csa1G030650 vs. NCBI nr
Match: gi|700208843|gb|KGN63939.1| (hypothetical protein Csa_1G030650 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 4.0e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGKKALFLTMGTVVMPVGSC 60
           MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGKKALFLTMGTVVMPVGSC
Sbjct: 1   MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGKKALFLTMGTVVMPVGSC 60

Query: 61  VLRRNLKEEQFVDLPSIYFPSGSLRRLLEVEERDRRHLLI 101
           VLRRNLKEEQFVDLPSIYFPSGSLRRLLEVEERDRRHLLI
Sbjct: 61  VLRRNLKEEQFVDLPSIYFPSGSLRRLLEVEERDRRHLLI 100

The following BLAST results are available for this feature:
BLAST of Csa1G030650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSH3_CUCSA2.8e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G030650 PE=4 SV=1[more]
BLAST of Csa1G030650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208843|gb|KGN63939.1|4.0e-47100.00hypothetical protein Csa_1G030650 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006397 mRNA processing
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0004721 phosphoprotein phosphatase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU091925cucumber EST collection version 3.0transcribed_cluster
CU142942cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G030650.1Csa1G030650.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU142942CU142942transcribed_cluster
CU091925CU091925transcribed_cluster