Csa1G030650.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G030650.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 3203619 .. 3204008 (-)
Sequence length303
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTTTCCACCTCAGCCTTAAACCAGCCACTATTTCTCTCAGTTTTGCCAAAGGCCCTTGAAAATACATTGTTACGAAAAGGGCTGATTTATAGCAATATTTTCAACGTGGTAGACGATGGTAAATCCACTAGCTTTTTGTCCAATTTATGGATTGGATCTTCCCCTTCAAGGGAACCTCTCCTAGGCTTTTCTTCTTATTTTTCAGGAAAGAAGGCACTATTTCTAACCATGGGAACCGTAGTGATGCCTGTTGGATCTTGTGTTCTGAGGAGAAACTTAAAAGAAGAGCAGTTTGTTGACTTGCCAAGCATATACTTTCCTAGTGGCAGTTTAAGAAGACTATTGGAAGTGGAAGAAAGAGACAGAAGGCACCTTCTCATCTGA

mRNA sequence

ATGGCACTTTCCACCTCAGCCTTAAACCAGCCACTATTTCTCTCAGTTTTGCCAAAGGCCCTTGAAAATACATTGTTACGAAAAGGGCTGATTTATAGCAATATTTTCAACGTGGTAGACGATGGAAAGAAGGCACTATTTCTAACCATGGGAACCGTAGTGATGCCTGTTGGATCTTGTGTTCTGAGGAGAAACTTAAAAGAAGAGCAGTTTGTTGACTTGCCAAGCATATACTTTCCTAGTGGCAGTTTAAGAAGACTATTGGAAGTGGAAGAAAGAGACAGAAGGCACCTTCTCATCTGA

Coding sequence (CDS)

ATGGCACTTTCCACCTCAGCCTTAAACCAGCCACTATTTCTCTCAGTTTTGCCAAAGGCCCTTGAAAATACATTGTTACGAAAAGGGCTGATTTATAGCAATATTTTCAACGTGGTAGACGATGGAAAGAAGGCACTATTTCTAACCATGGGAACCGTAGTGATGCCTGTTGGATCTTGTGTTCTGAGGAGAAACTTAAAAGAAGAGCAGTTTGTTGACTTGCCAAGCATATACTTTCCTAGTGGCAGTTTAAGAAGACTATTGGAAGTGGAAGAAAGAGACAGAAGGCACCTTCTCATCTGA

Protein sequence

MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGKKALFLTMGTVVMPVGSCVLRRNLKEEQFVDLPSIYFPSGSLRRLLEVEERDRRHLLI*
Homology
[Close]
BLAST of Csa1G030650.1 vs. TrEMBL
Match: A0A0A0LSH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G030650 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.8e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGKKALFLTMGTVVMPVGSC 60
           MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGKKALFLTMGTVVMPVGSC
Sbjct: 1   MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGKKALFLTMGTVVMPVGSC 60

Query: 61  VLRRNLKEEQFVDLPSIYFPSGSLRRLLEVEERDRRHLLI 101
           VLRRNLKEEQFVDLPSIYFPSGSLRRLLEVEERDRRHLLI
Sbjct: 61  VLRRNLKEEQFVDLPSIYFPSGSLRRLLEVEERDRRHLLI 100

[Close]
BLAST of Csa1G030650.1 vs. NCBI nr
Match: gi|700208843|gb|KGN63939.1| (hypothetical protein Csa_1G030650 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 4.0e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGKKALFLTMGTVVMPVGSC 60
           MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGKKALFLTMGTVVMPVGSC
Sbjct: 1   MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGKKALFLTMGTVVMPVGSC 60

Query: 61  VLRRNLKEEQFVDLPSIYFPSGSLRRLLEVEERDRRHLLI 101
           VLRRNLKEEQFVDLPSIYFPSGSLRRLLEVEERDRRHLLI
Sbjct: 61  VLRRNLKEEQFVDLPSIYFPSGSLRRLLEVEERDRRHLLI 100

The following BLAST results are available for this feature:
BLAST of Csa1G030650.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSH3_CUCSA2.8e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G030650 PE=4 SV=1[more]
BLAST of Csa1G030650.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208843|gb|KGN63939.1|4.0e-47100.00hypothetical protein Csa_1G030650 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G030650Csa1G030650gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G030650.1Csa1G030650.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G030650.1.cds2Csa1G030650.1.cds2CDS
Csa1G030650.1.cds1Csa1G030650.1.cds1CDS