CSPI01G04970 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G04970
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 3217698 .. 3218087 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTTTCCACCTCAGCCTTAAACCAGCCACTATTTCTCTCAGTTTTGCCAAAGGCCCTTGAAAATACATTGTTACGAAAAGGGCTGATTTATAGCAATATTTTCAACGTGGTAGACGATGGTAAATCCACTAGCTTTTTGTCCAATTTATGGATTGGATCTTCCCCTTCAAGGGAACCTCTCCTAGGCTTTTCTTCTTATTTTTCAGGAAAGAAGGCACTATTTCTAACCATGGGAACCGTAGTGATGCCTGTTGGATCTTGTGTTCTGAGGAGAAACTTAAAAGAAGAGCAGTTTGTTGACTTGCCAAGCATATCCTTTCCTAGTGGCAGTTTAAGAAGACTATTGGAAGTGGAAGAAAGAGACAGAAGGCACCTTCTCATCTGA

mRNA sequence

ATGGCACTTTCCACCTCAGCCTTAAACCAGCCACTATTTCTCTCAGTTTTGCCAAAGGCCCTTGAAAATACATTGTTACGAAAAGGGCTGATTTATAGCAATATTTTCAACGTGGTAGACGATGGTAAATCCACTAGCTTTTTGTCCAATTTATGGATTGGATCTTCCCCTTCAAGGGAACCTCTCCTAGGCTTTTCTTCTTATTTTTCAGGAAAGAAGGCACTATTTCTAACCATGGGAACCGTAGTGATGCCTGTTGGATCTTGTGTTCTGAGGAGAAACTTAAAAGAAGAGCAGTTTGTTGACTTGCCAAGCATATCCTTTCCTAGTGGCAGTTTAAGAAGACTATTGGAAGTGGAAGAAAGAGACAGAAGGCACCTTCTCATCTGA

Coding sequence (CDS)

ATGGCACTTTCCACCTCAGCCTTAAACCAGCCACTATTTCTCTCAGTTTTGCCAAAGGCCCTTGAAAATACATTGTTACGAAAAGGGCTGATTTATAGCAATATTTTCAACGTGGTAGACGATGGTAAATCCACTAGCTTTTTGTCCAATTTATGGATTGGATCTTCCCCTTCAAGGGAACCTCTCCTAGGCTTTTCTTCTTATTTTTCAGGAAAGAAGGCACTATTTCTAACCATGGGAACCGTAGTGATGCCTGTTGGATCTTGTGTTCTGAGGAGAAACTTAAAAGAAGAGCAGTTTGTTGACTTGCCAAGCATATCCTTTCCTAGTGGCAGTTTAAGAAGACTATTGGAAGTGGAAGAAAGAGACAGAAGGCACCTTCTCATCTGA
Homology
[Close]
BLAST of CSPI01G04970 vs. TrEMBL
Match: A0A0A0LSH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G030650 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-41
Identity = 99/129 (76.74%), Postives = 99/129 (76.74%), Query Frame = 1 

Query: 1   MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGKSTSFLSNLWIGSSPSRE 60
           MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGK                 
Sbjct: 1   MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGK----------------- 60

Query: 61  PLLGFSSYFSGKKALFLTMGTVVMPVGSCVLRRNLKEEQFVDLPSISFPSGSLRRLLEVE 120
                       KALFLTMGTVVMPVGSCVLRRNLKEEQFVDLPSI FPSGSLRRLLEVE
Sbjct: 61  ------------KALFLTMGTVVMPVGSCVLRRNLKEEQFVDLPSIYFPSGSLRRLLEVE 100

Query: 121 ERDRRHLLI 130
           ERDRRHLLI
Sbjct: 121 ERDRRHLLI 100

[Close]
BLAST of CSPI01G04970 vs. NCBI nr
Match: gi|700208843|gb|KGN63939.1| (hypothetical protein Csa_1G030650 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-41
Identity = 99/129 (76.74%), Postives = 99/129 (76.74%), Query Frame = 1 

Query: 1   MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGKSTSFLSNLWIGSSPSRE 60
           MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGK                 
Sbjct: 1   MALSTSALNQPLFLSVLPKALENTLLRKGLIYSNIFNVVDDGK----------------- 60

Query: 61  PLLGFSSYFSGKKALFLTMGTVVMPVGSCVLRRNLKEEQFVDLPSISFPSGSLRRLLEVE 120
                       KALFLTMGTVVMPVGSCVLRRNLKEEQFVDLPSI FPSGSLRRLLEVE
Sbjct: 61  ------------KALFLTMGTVVMPVGSCVLRRNLKEEQFVDLPSIYFPSGSLRRLLEVE 100

Query: 121 ERDRRHLLI 130
           ERDRRHLLI
Sbjct: 121 ERDRRHLLI 100

The following BLAST results are available for this feature:
BLAST of CSPI01G04970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G04970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSH3_CUCSA1.0e-4176.74Uncharacterized protein OS=Cucumis sativus GN=Csa_1G030650 PE=4 SV=1[more]
BLAST of CSPI01G04970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G04970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208843|gb|KGN63939.1|1.4e-4176.74hypothetical protein Csa_1G030650 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G04970.1CSPI01G04970.1mRNA