CU091925 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU091925
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	RNA polymerase II subunit A C-terminal domain phosphatase SSU72
Location	Chr1 : 3202685 .. 3208486 (+)
Sequence length	398

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGCAGCTGTCAAAACTGCTCCTCAACGTTGGCAAGATAATGCAGCAGATGGTTCCTTTGACGTAGTATTTACTTTTGAAGAGAAGGTCTTTGATATGGTTATTGAAGATTTGAACACCCGTGATCATGCAATGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCCATAGGAGCGCGACTTACTTTTGATCTTTGCCAGGAGATTGAACGGACTGAATCATGGGAAGATTCTATAGATGACATCGTGATTAACTTCGAAAAACAGCTGAGAAGAAAACTGTTGTATAGCATTTCCTTTTACTGAGGACAATATCCGGGAGTACATGGAGTCTGCGTACATCGAATCTTCCGTATTCAAGTGTGATTTTATGAAA

Library


Library category	ESTs
fruit (8DPP) library	1
gynoecious flower library	2
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU091925 vs. Swiss-Prot
Match: SSU72_DICDI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Dictyostelium discoideum GN=ssu72 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-19
Identity = 46/109 (42.20%), Postives = 74/109 (67.89%), Query Frame = 2


Query: 5   AVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRD--HAMMKTVLIVNLEVKDNH 64
           +VK AP++WQ+      F++V+TF+++V+D VIEDL  RD   ++++ V I+NL+VKD H
Sbjct: 107 SVKLAPEKWQEEQ-QSKFEIVYTFDQRVYDAVIEDLLQRDVSSSLLQPVHIINLQVKDTH 166

Query: 65  EEAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY 124
           EEA  GA+   ++   IE+T +WE+ +D I+ +F KQ  R+ L+++ FY
Sbjct: 167 EEAVGGAQHALEITSIIEKTLNWEEKLDQILEDFYKQTSRQFLHTLMFY 214

Query: 125  184
           
Sbjct: 227  214

Query: 185  244
           
Sbjct: 287  214

Query: 245  304
           
Sbjct: 347  214

Query: 305  326
           
Sbjct: 407  214

[Close]

BLAST of CU091925 vs. Swiss-Prot
Match: SSU72_MOUSE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus GN=Ssu72 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-19
Identity = 46/106 (43.40%), Postives = 72/106 (67.92%), Query Frame = 2


Query: 8   VKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHEEA 67
           +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN+R+    + V +VN++++DNHEEA
Sbjct: 91  IKPRPERFQ-NCTD-LFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEA 150

Query: 68  AIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY 127
            +GA L  +LCQ I+ TE  E+ ID+++  FE++  R  L+++ FY
Sbjct: 151 TLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVCFY 194

Query: 128  187
           
Sbjct: 211  194

Query: 188  247
           
Sbjct: 271  194

Query: 248  307
           
Sbjct: 331  194

Query: 308  326
           
Sbjct: 391  194

[Close]

BLAST of CU091925 vs. Swiss-Prot
Match: SSU72_DANRE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio GN=ssu72 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-19
Identity = 43/106 (40.57%), Postives = 72/106 (67.92%), Query Frame = 2


Query: 8   VKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHEEA 67
           +K+ P+R+Q  +    FD+V T EE+V+D V+EDLN+R+    + V ++N++++DNHEEA
Sbjct: 91  IKSRPERFQ--SCRDQFDLVITCEERVYDQVLEDLNSREQESFQPVHVINVDIQDNHEEA 150

Query: 68  AIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY 127
            +GA L  +LCQ I+ T+  E+ +D+++  FE++  R  L+S+ FY
Sbjct: 151 TLGAFLICELCQCIQHTDDMENEMDELLQEFEEKSHRPFLHSVCFY 194

Query: 128  187
           
Sbjct: 211  194

Query: 188  247
           
Sbjct: 271  194

Query: 248  307
           
Sbjct: 331  194

Query: 308  326
           
Sbjct: 391  194

[Close]

BLAST of CU091925 vs. Swiss-Prot
Match: SSU72_RAT (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus GN=Ssu72 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.5e-19
Identity = 46/106 (43.40%), Postives = 72/106 (67.92%), Query Frame = 2


Query: 8   VKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHEEA 67
           +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN+R+    + V +VN++++DNHEEA
Sbjct: 91  IKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEA 150

Query: 68  AIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY 127
            +GA L  +LCQ I+ TE  E+ ID+++  FE++  R  L+++ FY
Sbjct: 151 TLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVCFY 194

Query: 128  187
           
Sbjct: 211  194

Query: 188  247
           
Sbjct: 271  194

Query: 248  307
           
Sbjct: 331  194

Query: 308  326
           
Sbjct: 391  194

[Close]

BLAST of CU091925 vs. Swiss-Prot
Match: SSU72_HUMAN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens GN=SSU72 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.5e-19
Identity = 46/106 (43.40%), Postives = 72/106 (67.92%), Query Frame = 2


Query: 8   VKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHEEA 67
           +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN+R+    + V +VN++++DNHEEA
Sbjct: 91  IKPRPERFQ-NCKD-LFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEA 150

Query: 68  AIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY 127
            +GA L  +LCQ I+ TE  E+ ID+++  FE++  R  L+++ FY
Sbjct: 151 TLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194

Query: 128  187
           
Sbjct: 211  194

Query: 188  247
           
Sbjct: 271  194

Query: 248  307
           
Sbjct: 331  194

Query: 308  326
           
Sbjct: 391  194

[Close]

BLAST of CU091925 vs. TrEMBL
Match: D7T1F4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g01900 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 6.9e-46
Identity = 90/108 (83.33%), Postives = 99/108 (91.67%), Query Frame = 2


Query: 2   AAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHE 61
           ++VKTAPQRWQDNAADG FDVVFTFEEKVFDMV+EDL+ RDH +MKTVL++NLEVKDNHE
Sbjct: 86  SSVKTAPQRWQDNAADGPFDVVFTFEEKVFDMVVEDLHNRDHVLMKTVLVINLEVKDNHE 145

Query: 62  EAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY 121
           EAAIGARL  DLCQEIE TESWEDS+DD+V  FEKQ RRKLLYSISFY
Sbjct: 146 EAAIGARLALDLCQEIEATESWEDSVDDVVSGFEKQHRRKLLYSISFY 193

Query: 122  181
           
Sbjct: 206  193

Query: 182  241
           
Sbjct: 266  193

Query: 242  301
           
Sbjct: 326  193

Query: 302  326
           
Sbjct: 386  193

[Close]

BLAST of CU091925 vs. TrEMBL
Match: A0A151REB0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_037812 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.8e-44
Identity = 84/108 (77.78%), Postives = 100/108 (92.59%), Query Frame = 2


Query: 2   AAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHE 61
           ++VK APQRWQ+NAADGSFDVVFTFEEKVFDMV+EDL+TRDH +MKTVL++NLEVKDNH+
Sbjct: 86  SSVKLAPQRWQENAADGSFDVVFTFEEKVFDMVVEDLHTRDHVLMKTVLVINLEVKDNHD 145

Query: 62  EAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY 121
           EAA+GARLT DLCQ+IE  ESWE+S+DDI+  FEKQ RRKLL+S+SFY
Sbjct: 146 EAAVGARLTLDLCQQIEAAESWEESVDDIIAGFEKQHRRKLLFSVSFY 193

Query: 122  181
           
Sbjct: 206  193

Query: 182  241
           
Sbjct: 266  193

Query: 242  301
           
Sbjct: 326  193

Query: 302  326
           
Sbjct: 386  193

[Close]

BLAST of CU091925 vs. TrEMBL
Match: M5WAQ3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011857mg PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 6.4e-44
Identity = 89/108 (82.41%), Postives = 94/108 (87.04%), Query Frame = 2


Query: 2   AAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHE 61
           + VK APQRWQDNAADGSFDVVFTFEEKVFDMV+EDLN RDH + K  LI+NLEVKDNHE
Sbjct: 86  STVKLAPQRWQDNAADGSFDVVFTFEEKVFDMVLEDLNNRDHVLKKCALIINLEVKDNHE 145

Query: 62  EAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY 121
           EAA+GARL  DLCQEIE  ESWEDSIDDIV  FEKQ RRKLLYSISFY
Sbjct: 146 EAAVGARLALDLCQEIEAAESWEDSIDDIVNGFEKQQRRKLLYSISFY 193

Query: 122  181
           
Sbjct: 206  193

Query: 182  241
           
Sbjct: 266  193

Query: 242  301
           
Sbjct: 326  193

Query: 302  326
           
Sbjct: 386  193

[Close]

BLAST of CU091925 vs. TrEMBL
Match: I3S5R7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-43
Identity = 86/106 (81.13%), Postives = 96/106 (90.57%), Query Frame = 2


Query: 8   VKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHEEA 67
           VK APQRWQ+NAADGSFD+VF FEEKVFDMVIEDL+ RDH ++KTVL++NLEVKDNHEEA
Sbjct: 28  VKLAPQRWQENAADGSFDIVFAFEEKVFDMVIEDLHNRDHVLLKTVLVINLEVKDNHEEA 87

Query: 68  AIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY 127
           A+GARLT DLCQEIE  ESWE+SIDDI+  FEKQ RRKLLYSISFY
Sbjct: 88  AVGARLTLDLCQEIEAAESWEESIDDIIGGFEKQHRRKLLYSISFY 133

Query: 128  187
           
Sbjct: 148  133

Query: 188  247
           
Sbjct: 208  133

Query: 248  307
           
Sbjct: 268  133

Query: 308  326
           
Sbjct: 328  133

[Close]

BLAST of CU091925 vs. TrEMBL
Match: V4SC52_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005966mg PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.4e-43
Identity = 86/106 (81.13%), Postives = 94/106 (88.68%), Query Frame = 2


Query: 8   VKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHEEA 67
           VK APQRWQDNA DGSFD+VFTFEEKVFD V+EDLNTR+   MKTVL++NLEVKDNHEEA
Sbjct: 88  VKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFMKTVLVINLEVKDNHEEA 147

Query: 68  AIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY 127
           AIG RLTFDLCQEIE  ESWE+SIDDI+  FEK+ RRKLLYSISFY
Sbjct: 148 AIGGRLTFDLCQEIEAAESWEESIDDIIAAFEKRHRRKLLYSISFY 193

Query: 128  187
           
Sbjct: 208  193

Query: 188  247
           
Sbjct: 268  193

Query: 248  307
           
Sbjct: 328  193

Query: 308  326
           
Sbjct: 388  193

[Close]

BLAST of CU091925 vs. NCBI nr
Match: gi|449439211|ref|XP_004137380.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 9.8e-54
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 2


Query: 2   AAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHE 61
           AAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHE
Sbjct: 86  AAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHE 145

Query: 62  EAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY 121
           EAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY
Sbjct: 146 EAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY 193

Query: 122  181
           
Sbjct: 206  193

Query: 182  241
           
Sbjct: 266  193

Query: 242  301
           
Sbjct: 326  193

Query: 302  326
           
Sbjct: 386  193

[Close]

BLAST of CU091925 vs. NCBI nr
Match: gi|659066237|ref|XP_008446784.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis melo])

HSP 1 Score: 214.5 bits (545), Expect = 1.1e-52
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 2


Query: 2   AAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHE 61
           AAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHA+MKTVLIVNLEVKDNHE
Sbjct: 86  AAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHE 145

Query: 62  EAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY 121
           EAAIGARLTFDLCQEIERTESWEDSIDDIVI FEKQLRRKLLYSISFY
Sbjct: 146 EAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQLRRKLLYSISFY 193

Query: 122  181
           
Sbjct: 206  193

Query: 182  241
           
Sbjct: 266  193

Query: 242  301
           
Sbjct: 326  193

Query: 302  326
           
Sbjct: 386  193

[Close]

BLAST of CU091925 vs. NCBI nr
Match: gi|225435973|ref|XP_002271255.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Vitis vinifera])

HSP 1 Score: 191.4 bits (485), Expect = 9.8e-46
Identity = 90/108 (83.33%), Postives = 99/108 (91.67%), Query Frame = 2


Query: 2   AAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHE 61
           ++VKTAPQRWQDNAADG FDVVFTFEEKVFDMV+EDL+ RDH +MKTVL++NLEVKDNHE
Sbjct: 86  SSVKTAPQRWQDNAADGPFDVVFTFEEKVFDMVVEDLHNRDHVLMKTVLVINLEVKDNHE 145

Query: 62  EAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY 121
           EAAIGARL  DLCQEIE TESWEDS+DD+V  FEKQ RRKLLYSISFY
Sbjct: 146 EAAIGARLALDLCQEIEATESWEDSVDDVVSGFEKQHRRKLLYSISFY 193

Query: 122  181
           
Sbjct: 206  193

Query: 182  241
           
Sbjct: 266  193

Query: 242  301
           
Sbjct: 326  193

Query: 302  326
           
Sbjct: 386  193

[Close]

BLAST of CU091925 vs. NCBI nr
Match: gi|502164958|ref|XP_004513347.1| (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cicer arietinum])

HSP 1 Score: 186.0 bits (471), Expect = 4.1e-44
Identity = 88/108 (81.48%), Postives = 98/108 (90.74%), Query Frame = 2


Query: 2   AAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHE 61
           + VK APQRWQ+NAADG+FDVV TFEEKVFDMVIEDL+ RDH ++KTVL+VNLEVKDNHE
Sbjct: 86  SGVKLAPQRWQENAADGTFDVVITFEEKVFDMVIEDLHNRDHVLLKTVLVVNLEVKDNHE 145

Query: 62  EAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY 121
           EAAIGARLT DLCQEIE  ESWE+SIDDI++ FEKQ RRKLLYSISFY
Sbjct: 146 EAAIGARLTLDLCQEIEAVESWEESIDDIIVGFEKQHRRKLLYSISFY 193

Query: 122  181
           
Sbjct: 206  193

Query: 182  241
           
Sbjct: 266  193

Query: 242  301
           
Sbjct: 326  193

Query: 302  326
           
Sbjct: 386  193

[Close]

BLAST of CU091925 vs. NCBI nr
Match: gi|1012329234|gb|KYP40827.1| (hypothetical protein KK1_037812 [Cajanus cajan])

HSP 1 Score: 185.7 bits (470), Expect = 5.4e-44
Identity = 84/108 (77.78%), Postives = 100/108 (92.59%), Query Frame = 2


Query: 2   AAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHAMMKTVLIVNLEVKDNHE 61
           ++VK APQRWQ+NAADGSFDVVFTFEEKVFDMV+EDL+TRDH +MKTVL++NLEVKDNH+
Sbjct: 86  SSVKLAPQRWQENAADGSFDVVFTFEEKVFDMVVEDLHTRDHVLMKTVLVINLEVKDNHD 145

Query: 62  EAAIGARLTFDLCQEIERTESWEDSIDDIVINFEKQLRRKLLYSISFY 121
           EAA+GARLT DLCQ+IE  ESWE+S+DDI+  FEKQ RRKLL+S+SFY
Sbjct: 146 EAAVGARLTLDLCQQIEAAESWEESVDDIIAGFEKQHRRKLLFSVSFY 193

Query: 122  181
           
Sbjct: 206  193

Query: 182  241
           
Sbjct: 266  193

Query: 242  301
           
Sbjct: 326  193

Query: 302  326
           
Sbjct: 386  193

The following BLAST results are available for this feature:

BLAST of CU091925 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SSU72_DICDI	1.6e-19	42.20	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Dictyostelium...	[more]
SSU72_MOUSE	2.7e-19	43.40	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus ...	[more]
SSU72_DANRE	2.7e-19	40.57	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio G...	[more]
SSU72_RAT	3.5e-19	43.40	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norveg...	[more]
SSU72_HUMAN	3.5e-19	43.40	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens ...	[more]

BLAST of CU091925 vs. TrEMBL


Match Name	E-value	Identity	Description
D7T1F4_VITVI	6.9e-46	83.33	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g01900 PE=4 SV=...	[more]
A0A151REB0_CAJCA	3.8e-44	77.78	Uncharacterized protein OS=Cajanus cajan GN=KK1_037812 PE=4 SV=1	[more]
M5WAQ3_PRUPE	6.4e-44	82.41	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011857mg PE=4 SV=1	[more]
I3S5R7_LOTJA	1.9e-43	81.13	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
V4SC52_9ROSI	5.4e-43	81.13	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005966mg PE=4 SV=1	[more]

BLAST of CU091925 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439211\|ref\|XP_004137380.1\|	9.8e-54	100.00	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu...	[more]
gi\|659066237\|ref\|XP_008446784.1\|	1.1e-52	98.15	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucu...	[more]
gi\|225435973\|ref\|XP_002271255.1\|	9.8e-46	83.33	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Viti...	[more]
gi\|502164958\|ref\|XP_004513347.1\|	4.1e-44	81.48	PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cice...	[more]
gi\|1012329234\|gb\|KYP40827.1\|	5.4e-44	77.78	hypothetical protein KK1_037812 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR006811	RNA_pol_II_suA

Vocabulary: **Molecular Function**
Term	Definition
GO:0004721	phosphoprotein phosphatase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004721	phosphoprotein phosphatase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G030650	Csa1G030650	gene
Csa1G030660	Csa1G030660	gene
Csa1G030640	Csa1G030640	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LPFH1	FKNP3UI02LPFH1	EST
G0134353	G0134353	EST
G0200577	G0200577	EST
H0008435	H0008435	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006811	RNA polymerase II subunit A	PANTHER	PTHR20383	FAMILY NOT NAMED	coord: 4..104 score: 5.9
IPR006811	RNA polymerase II subunit A	PFAM	PF04722	Ssu72	coord: 3..107 score: 6.6