Csa1G028050 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G028050
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionEukaryotic translation initiation factor 2 beta subunit-like
LocationChr1 : 3097057 .. 3100574 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGACGAAGTTCAGAATGATGCGAACGATCAGGTGGCAGATGTGAGTTTTTCTGTTCTTAACTATTATCTCTGAGAACATACATTTTCATTAAAAAATTTCACATATTGTGGGTATTCCCATTTTTGTGTGGGTATTCCCATTTTTGTTTTTCCCCTTTCAATTATTCATCCAAAGAAACCTAAATCTTTGAGTTGCCATTTGGCGAACCACACACTTGTGTGTTTCAACAGTCTACGAGAATTTCATTCTATTATGTACAACTGTAGGTGTATAGCATTCTGGTAATCCAAGGAATAAATTGTATAACCCTTGAGGTGGCAGTCATTGATGATTTACCGAGTTACCCTAAATGCTATACTATTAGTTGTCTGGTCTTGTTTAAGATTACACAGTCCAATCTAGTTCTTGAAGTATTTTCTATTGGATTGTTCACTGGTGCTAAGGATCGAAGCTGCATTCTGCTGTCGAGTTACAGGCCCATATCTTACTATGTCTCTTTATCAAGCAGTTACGAATTGTTGTTCATGTGCAAGCATAGATGCGACAGCATGATGCATTTATATGGTTTATTCTTGCAGATTGCCTTCGATCCAACTAAGAAGAAGAAGAAGAAGAAGGTTGTACTTCAGGATCGGACTGATGAGATTGTTGACAAGTTAGCAGAGAAAACTGAAAGTCTGTCAGGTATGAAAAGTTGGCATTACATTCCATTTCCATTTCATGATATTTTTATTTTGTTGGTGAAATGGGAATTGTTGATGATTTTTTTTGTGTCCTGCAGTTTCTGATGGTTTGGAGACTACCACATTTTCTGGACTTAAAAAGAAGAAGAAAAAACAAGTATGTCTTACTTTTCTTTGGTCAAGTTCTATTTAGTGATTGATCTCATTTATTTTAATTATAGGTAGAGGTTAGCAACGCATATGGCATATGCAAACATAACTTAATCCAAGTATTATATACCAATGTGTTTAAAATTACATTTATATGAATGTTAAAACACAATCATAGTCCATGAATTTCAAACTTTTGTATCAAAAATCTTTTAATCTTTCAATTTTGTGTCCGAGGGGTCATATATGACTAATTGATTTAGGAGCTATCAATTTATTTTATGTCCAGTTGAACACTAAACATCCAGTTTTGTAACTAGTAGATACAATAATTAAGCATCTAATACAAAACCTATTTGACATTCAGATTATATGTCTAATATGATGTTTATTTTATAATCATTTTGAATATGCAACAAACCTTTCAATACTTTAGCCAACTATTAGTCCCCAAATTGAGAATTTAGTGTTCTATTAGACGTTTCGCTATAAAATACAAATCTGAAAGTTTATTTGTTAAACTTATTTAACCTTATATGAATTTGTGTCTCCTGTGACATAAAGTTCTCAATTCTCCATGGAGAAAAATGTGCACTTTTAATGTTCATTTTTGTGGCCAATGATGGCTTTATTTGAGTATTAGTCTCATTTCATTATTTTAGTGAAAAGTTATGTTTCTGTTTCAAAAATCTTCATATGAATTTGTATCTCCTCTAATGCAAAGTTCTCGACCTGCACATGGAGAACCGAGCGTATTTTTAACGTTCAGTGACCATATAGACACAAATTTAAAAGTTTATCGGCTAAACTTATGTACCTTTATATTATGATATCCCCGTTGGCATGAACTTAAAAGTTTATTGGCTAAACTTGTTTAACCTTATATTTATTGTATCTTCTCTGACATAAAGTTCTTGATTTTTCATGGAGGAGATTGAAGAAAGATGAACATTGTTAGAATATGTCGTATCTTACTAAAAACTTAAAAAGAAAAAGAGAACAAAAGTTTCACATGGCTCACCATGCACCTCAAGCTCGTTTCATTAAAAAGGACGACTTGCTTTAGAAGCACGAGTACTTTTTGAAGAACTGCACAATTGGCCTTCTATTGTATGGAGTTTCTCATTGAAAACGAGTTGTGTATATAATTTATACTTTTTTGTTTGCCATCTCCTTTTCAACTGTAGCCCTTTTCGACTGAAAAGTGATTATTATGCCAATAAGACCAAGTGGGGGAAATGAAGACCATAAGGGAGTTATTCTACAGTTTCGTTATCCTTGGGAGGGAAGTGATTGTGTCACACCTTGCCCAGCACACGTCTTTGCTTGGTATGCGAGACACGGTATGAATTTGAGTATTCTGACGCGTTAAACACCAAAATACTCAGCTTGAGGTCCTTAAGCTTTGCTATAGCATTGAGAAAGTTGGTGCATAGTTGTGCAAGCTCTTGTCAATCTTTATACATGGGGGATGGGGATCATCAATTTTTAATATAGAACCTGTTTGAATCCGTTGATGCTCTTTTAGGGCTTAATGGTTGGAGAGTCGAAAAATGGAATTCTTGGAGGGTTTGAAAGATCTCAAGTGAAGGTTTGGTCTTGTTTTAGATTCTGTGTTTTTGTGGACTATGCGACTTTGCCTATTTGTAATTATTAGTTAGGACTTGTTTAGTTTGTATTGAGATGTTAGAATCTCATATTGAAAAAGTCAAGGGAACTCACACTTCTTATAAGATAAGATAAAGATAGATGAGTTACTCCTCCCATTGCCATTGAGGTGGAACCTCATACTATCAAAAAGTTTGATCTGAAGCTGTTTTTATAGTTTGCAATCTCTCCTTTTCATTGGTTTTTTTATAAATGAATTCTCGAAATTTATTTTTTTAGAAAAATCTTAATTACTGTTGACGAGTGTCCACTGGAATATATCTTGTTACCAACTATGAGTGATTGTGTTCACTTCTAATTTCGACCTTTGTTATAGTTTTTTTCCCTTCCCTCTTATTTATTTCAGATAAATATGTGATTTGCATTGGGTGCAAGAGTCCGGACACTATTTTTTCAAAGGAGAACCGGCTTTTCTTTCTCAGATGCGAGAAGGTAAGGTTTTTTTCTTTTGGTTTTTGTTTTGTATTTTTTCCCTTGCAGTGTGTTTATCCTATGGTCGTGATTTTTGTGTGAATTTGTGTTAGTATATTAAATTTACCATTACCCACTACAAGCCTTTTGGGTCAATCGATGATTTAAGAAGGTGTGTTACTTTAGATGTCCTGTATTCGAACCCTTGCAATGTTGTTTTCTCCCCAATTAAAATTAATTTCCACTTATTAGGCCTTTCAAGTATTTCAACCCCACAAGTAATGAGAGTATTGTGATATAGATTAAATTTACCTTCACTCATTAGCTCGAGTTTTGGATTGAATTGGCGATTTAAGATGCTATGAGAGTAGGTTACTTCAGGATGTCGTTGATTAAGAGAGTAGGGGTATAATGGTCCTACCATTTTATAAATGAAATCTCAGTATTTATTTTAAAACATCTTAATTACTGTTGACGAGTGTCCACTGGAATACATCTTGTTACCAACTATGAGTGATTTTGTTCACTTCTAATTTCGACCTTCGTTATAGTTTTTTCCCTTCCCTCTCATTTATTTAGTTATTTCAGATGAATATGTGA

mRNA sequence

ATGGAGGACGAAGTTCAGAATGATGCGAACGATCAGGTGGCAGATATTGCCTTCGATCCAACTAAGAAGAAGAAGAAGAAGAAGGTTGTACTTCAGGATCGGACTGATGAGATTGTTGACAAGTTAGCAGAGAAAACTGAAAGTCTGTCAGTTTCTGATGGTTTGGAGACTACCACATTTTCTGGACTTAAAAAGAAGAAGAAAAAACAAATGAATATGTGA

Coding sequence (CDS)

ATGGAGGACGAAGTTCAGAATGATGCGAACGATCAGGTGGCAGATATTGCCTTCGATCCAACTAAGAAGAAGAAGAAGAAGAAGGTTGTACTTCAGGATCGGACTGATGAGATTGTTGACAAGTTAGCAGAGAAAACTGAAAGTCTGTCAGTTTCTGATGGTTTGGAGACTACCACATTTTCTGGACTTAAAAAGAAGAAGAAAAAACAAATGAATATGTGA

Protein sequence

MEDEVQNDANDQVADIAFDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTTFSGLKKKKKKQMNM*
Homology
[Close]
BLAST of Csa1G028050 vs. Swiss-Prot
Match: IF2B_MALDO (Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 2.3e-15
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 1 

Query: 1  MEDEVQNDANDQV-ADIA-FDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETT 60
          M D+ QN+  D+V ADIA FDPTKKKKKK+VV+QD TD+ V KLAEK E+ + S+G E +
Sbjct: 1  MADDNQNEVKDEVVADIAPFDPTKKKKKKEVVIQDTTDDSVGKLAEKAEACTASEGQE-S 60

Query: 61 TFSGLKKKKKK 70
          TF+GLKKKKKK
Sbjct: 61 TFAGLKKKKKK 70

[Close]
BLAST of Csa1G028050 vs. Swiss-Prot
Match: IF2B_WHEAT (Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.3e-14
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIA-FDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTT 60
          M DE Q +  ++  +IA FDPTKKKKKKKVV+QD  DE VDKLAEKTE LSV++  E  +
Sbjct: 1  MADEEQMERKEEATEIAPFDPTKKKKKKKVVIQDPADE-VDKLAEKTEGLSVTESGE-AS 60

Query: 61 FSGLKKKKKKQMNM 74
          F GLKKKKKK + +
Sbjct: 61 FVGLKKKKKKLVEL 72

[Close]
BLAST of Csa1G028050 vs. Swiss-Prot
Match: IF2B_ARATH (Eukaryotic translation initiation factor 2 subunit beta OS=Arabidopsis thaliana GN=EMB1401 PE=1 SV=3)

HSP 1 Score: 65.1 bits (157), Expect = 3.7e-10
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIAFDPTKKKKKKKVVLQDRTDEIVDKL-AEKTESLSVSDGLETTT 60
          M DE+     +Q     FDP+KKKKKKKVV+Q+  +++ +    EK++SL V+DGLE ++
Sbjct: 1  MADEINEIREEQEQLAPFDPSKKKKKKKVVIQEPVEDLAESSQTEKSDSLPVNDGLE-SS 60

Query: 61 FSGLKKKKKK 70
          F+G+KKKKKK
Sbjct: 61 FTGMKKKKKK 69

[Close]
BLAST of Csa1G028050 vs. TrEMBL
Match: A0A0A0LT22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G028050 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.0e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIAFDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTTF 60
          MEDEVQNDANDQVADIAFDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTTF
Sbjct: 1  MEDEVQNDANDQVADIAFDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTTF 60

Query: 61 SGLKKKKKKQMNM 74
          SGLKKKKKKQMNM
Sbjct: 61 SGLKKKKKKQMNM 73

[Close]
BLAST of Csa1G028050 vs. TrEMBL
Match: A0A0A0LY41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G145930 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.2e-24
Identity = 63/70 (90.00%), Postives = 63/70 (90.00%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIA-FDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTT 60
          M DEVQND NDQVADIA FDPTKKKKKKKVVLQD TDE VDKLAEKTESLSVSDGLE  T
Sbjct: 1  MADEVQNDVNDQVADIAPFDPTKKKKKKKVVLQDPTDESVDKLAEKTESLSVSDGLEAAT 60

Query: 61 FSGLKKKKKK 70
          FSGLKKKKKK
Sbjct: 61 FSGLKKKKKK 70

[Close]
BLAST of Csa1G028050 vs. TrEMBL
Match: F6GU78_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g08180 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-17
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIA-FDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTT 60
          M DE QN+  D+VA++A FDPTKKKKKKKVV+QD  D+ VDKLAEKTESLSVS+G+E  T
Sbjct: 1  MADENQNEVKDEVAELAPFDPTKKKKKKKVVIQDPADDSVDKLAEKTESLSVSEGVE-NT 60

Query: 61 FSGLKKKKKK 70
          FSG+KKKKKK
Sbjct: 61 FSGMKKKKKK 69

[Close]
BLAST of Csa1G028050 vs. TrEMBL
Match: A0A067GCP8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024241mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.7e-17
Identity = 51/70 (72.86%), Postives = 61/70 (87.14%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIA-FDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTT 60
          M DE Q D  D+VA++A FDPTKKKKKKKVV+QD +D+ VDKLAEKTE+LSVS+GLE +T
Sbjct: 1  MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLE-ST 60

Query: 61 FSGLKKKKKK 70
          F+GLKKKKKK
Sbjct: 61 FTGLKKKKKK 69

[Close]
BLAST of Csa1G028050 vs. TrEMBL
Match: A0A067GPL5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024241mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.7e-17
Identity = 51/70 (72.86%), Postives = 61/70 (87.14%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIA-FDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTT 60
          M DE Q D  D+VA++A FDPTKKKKKKKVV+QD +D+ VDKLAEKTE+LSVS+GLE +T
Sbjct: 1  MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLE-ST 60

Query: 61 FSGLKKKKKK 70
          F+GLKKKKKK
Sbjct: 61 FTGLKKKKKK 69

[Close]
BLAST of Csa1G028050 vs. TAIR10
Match: AT5G20920.1 (AT5G20920.1 eukaryotic translation initiation factor 2 beta subunit)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-11
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIAFDPTKKKKKKKVVLQDRTDEIVDKL-AEKTESLSVSDGLETTT 60
          M DE+     +Q     FDP+KKKKKKKVV+Q+  +++ +    EK++SL V+DGLE ++
Sbjct: 1  MADEINEIREEQEQLAPFDPSKKKKKKKVVIQEPVEDLAESSQTEKSDSLPVNDGLE-SS 60

Query: 61 FSGLKKKKKK 70
          F+G+KKKKKK
Sbjct: 61 FTGMKKKKKK 69

[Close]
BLAST of Csa1G028050 vs. NCBI nr
Match: gi|700208831|gb|KGN63927.1| (hypothetical protein Csa_1G028050 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-31
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIAFDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTTF 60
          MEDEVQNDANDQVADIAFDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTTF
Sbjct: 1  MEDEVQNDANDQVADIAFDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTTF 60

Query: 61 SGLKKKKKKQMNM 74
          SGLKKKKKKQMNM
Sbjct: 61 SGLKKKKKKQMNM 73

[Close]
BLAST of Csa1G028050 vs. NCBI nr
Match: gi|778656633|ref|XP_011649426.1| (PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 5.5e-30
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIAFDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTTF 60
          MEDEVQNDANDQVADIAFDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTTF
Sbjct: 1  MEDEVQNDANDQVADIAFDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTTF 60

Query: 61 SGLKKKKKKQM 72
          SGLKKKKKKQ+
Sbjct: 61 SGLKKKKKKQV 71

[Close]
BLAST of Csa1G028050 vs. NCBI nr
Match: gi|659071819|ref|XP_008462075.1| (PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 3.1e-25
Identity = 65/70 (92.86%), Postives = 65/70 (92.86%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIA-FDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTT 60
          M DEVQND  DQVADIA FDPTKKKKKKKVVLQD TDEIVDKLAEKTESLSVSDGLETTT
Sbjct: 1  MADEVQNDVTDQVADIAPFDPTKKKKKKKVVLQDPTDEIVDKLAEKTESLSVSDGLETTT 60

Query: 61 FSGLKKKKKK 70
          FSGLKKKKKK
Sbjct: 61 FSGLKKKKKK 70

[Close]
BLAST of Csa1G028050 vs. NCBI nr
Match: gi|778659350|ref|XP_004139463.2| (PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 4.5e-24
Identity = 63/70 (90.00%), Postives = 63/70 (90.00%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIA-FDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTT 60
          M DEVQND NDQVADIA FDPTKKKKKKKVVLQD TDE VDKLAEKTESLSVSDGLE  T
Sbjct: 1  MADEVQNDVNDQVADIAPFDPTKKKKKKKVVLQDPTDESVDKLAEKTESLSVSDGLEAAT 60

Query: 61 FSGLKKKKKK 70
          FSGLKKKKKK
Sbjct: 61 FSGLKKKKKK 70

[Close]
BLAST of Csa1G028050 vs. NCBI nr
Match: gi|1009116240|ref|XP_015874665.1| (PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Ziziphus jujuba])

HSP 1 Score: 98.6 bits (244), Expect = 4.9e-18
Identity = 53/70 (75.71%), Postives = 60/70 (85.71%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIA-FDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTT 60
          M DE QND  ++VA+I  FDPTKKKKKKKVV+QD  D+ VDKLAEKTESLSV+DGLE +T
Sbjct: 1  MADENQNDVKEEVAEIVPFDPTKKKKKKKVVIQDPADDSVDKLAEKTESLSVADGLE-ST 60

Query: 61 FSGLKKKKKK 70
          FSGLKKKKKK
Sbjct: 61 FSGLKKKKKK 69

The following BLAST results are available for this feature:
BLAST of Csa1G028050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IF2B_MALDO2.3e-1564.79Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 ... [more]
IF2B_WHEAT7.3e-1460.81Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=... [more]
IF2B_ARATH3.7e-1048.57Eukaryotic translation initiation factor 2 subunit beta OS=Arabidopsis thaliana ... [more]
BLAST of Csa1G028050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT22_CUCSA7.0e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G028050 PE=4 SV=1[more]
A0A0A0LY41_CUCSA3.2e-2490.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G145930 PE=4 SV=1[more]
F6GU78_VITVI1.3e-1772.86Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g08180 PE=4 SV=... [more]
A0A067GCP8_CITSI3.7e-1772.86Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024241mg PE=4 SV=1[more]
A0A067GPL5_CITSI3.7e-1772.86Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024241mg PE=4 SV=1[more]
BLAST of Csa1G028050 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G20920.12.1e-1148.57 eukaryotic translation initiation factor 2 beta subunit[more]
BLAST of Csa1G028050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208831|gb|KGN63927.1|1.0e-31100.00hypothetical protein Csa_1G028050 [Cucumis sativus][more]
gi|778656633|ref|XP_011649426.1|5.5e-3098.59PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Cucumis... [more]
gi|659071819|ref|XP_008462075.1|3.1e-2592.86PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Cucumis melo... [more]
gi|778659350|ref|XP_004139463.2|4.5e-2490.00PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Cucumis sati... [more]
gi|1009116240|ref|XP_015874665.1|4.9e-1875.71PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Ziziphus juj... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU109705cucumber EST collection version 3.0transcribed_cluster
CU113247cucumber EST collection version 3.0transcribed_cluster
CU121616cucumber EST collection version 3.0transcribed_cluster
CU152351cucumber EST collection version 3.0transcribed_cluster
CU161268cucumber EST collection version 3.0transcribed_cluster
CU163883cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G028050.1Csa1G028050.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU161268CU161268transcribed_cluster
CU163883CU163883transcribed_cluster
CU113247CU113247transcribed_cluster
CU109705CU109705transcribed_cluster
CU152351CU152351transcribed_cluster
CU121616CU121616transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G028050Cla97C03G050830Watermelon (97103) v2cuwmbB049
Csa1G028050CSPI01G04860Wild cucumber (PI 183967)cpicuB000
Csa1G028050Cucsa.112020Cucumber (Gy14) v1cgycuB137
Csa1G028050CsGy1G004710Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G028050Cucurbita maxima (Rimu)cmacuB428
Csa1G028050Cucurbita moschata (Rifu)cmocuB417
Csa1G028050Cucurbita pepo (Zucchini)cpecuB533
Csa1G028050Silver-seed gourdcarcuB0549