CU113247 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU113247
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 3097057 .. 3097879 (-)
Sequence length190
The following sequences are available for this feature:

transcribed_cluster sequence

AGTTCCAGAAAATGTGGTAGTCTCCAAACCATCAGAAACTGACAGACTTTCAGTTTTCTCTGCTAACTTGTCAACAATCTCATCAGTCCGATCCTGAAGTACAACCTTCTTCTTCTTCTTCTTCTTAGTTGGATCGAGGGCAATATCTGCCACCTGATCGTTCGCATCATTCTGAACTTCGTCCTCCATC
Library categoryESTs
gynoecious flower library2
BLAST of CU113247 vs. TrEMBL
Match: A0A0A0LT22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G028050 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.3e-20
Identity = 54/62 (87.10%), Postives = 54/62 (87.10%), Query Frame = -2

Query: 4   MEDEVQNDANDQVADIALDPTXXXXXXXVVLQDRTDEIVDKLAEKTESLSVSDGLETTTF 63
           MEDEVQNDANDQVADIA DPT       VVLQDRTDEIVDKLAEKTESLSVSDGLETTTF
Sbjct: 1   MEDEVQNDANDQVADIAFDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTTF 60

Query: 64  SG 123
           SG
Sbjct: 61  SG 62

Query: 124 183
           
Sbjct: 121 62

Query: 184 190
           
Sbjct: 181 62

BLAST of CU113247 vs. TrEMBL
Match: A0A0A0LY41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G145930 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 8.7e-15
Identity = 48/63 (76.19%), Postives = 48/63 (76.19%), Query Frame = -2

Query: 4   MEDEVQNDANDQVADIA-LDPTXXXXXXXVVLQDRTDEIVDKLAEKTESLSVSDGLETTT 63
           M DEVQND NDQVADIA  DPT       VVLQD TDE VDKLAEKTESLSVSDGLE  T
Sbjct: 1   MADEVQNDVNDQVADIAPFDPTKKKKKKKVVLQDPTDESVDKLAEKTESLSVSDGLEAAT 60

Query: 64  FSG 123
           FSG
Sbjct: 61  FSG 63

Query: 124 183
           
Sbjct: 121 63

Query: 184 190
           
Sbjct: 181 63

BLAST of CU113247 vs. TrEMBL
Match: F6GU78_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g08180 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-08
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = -2

Query: 4   MEDEVQNDANDQVADIA-LDPTXXXXXXXVVLQDRTDEIVDKLAEKTESLSVSDGLETTT 63
           M DE QN+  D+VA++A  DPT       VV+QD  D+ VDKLAEKTESLSVS+G+E  T
Sbjct: 1   MADENQNEVKDEVAELAPFDPTKKKKKKKVVIQDPADDSVDKLAEKTESLSVSEGVE-NT 60

Query: 64  FSG 123
           FSG
Sbjct: 61  FSG 62

Query: 124 183
           
Sbjct: 121 62

Query: 184 190
           
Sbjct: 181 62

BLAST of CU113247 vs. TrEMBL
Match: I3SDH8_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-06
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = -2

Query: 4   MEDEVQNDANDQVADIA-LDPTXXXXXXXVVLQDRTDEIVDKLAEKTESLSVSDGLETTT 63
           MEDE QND  ++VA+ A LD T       + + D  D+ VDKLAEKTE+LSVSDG+E T 
Sbjct: 1   MEDESQNDMKEEVAEFAPLDMTKKKKKKKITIVDPADDSVDKLAEKTENLSVSDGVE-TA 60

Query: 64  FSG 123
           F+G
Sbjct: 61  FAG 62

Query: 124 183
           
Sbjct: 121 62

Query: 184 190
           
Sbjct: 181 62

BLAST of CU113247 vs. NCBI nr
Match: gi|700208831|gb|KGN63927.1| (hypothetical protein Csa_1G028050 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 54/62 (87.10%), Postives = 54/62 (87.10%), Query Frame = -2

Query: 4   MEDEVQNDANDQVADIALDPTXXXXXXXVVLQDRTDEIVDKLAEKTESLSVSDGLETTTF 63
           MEDEVQNDANDQVADIA DPT       VVLQDRTDEIVDKLAEKTESLSVSDGLETTTF
Sbjct: 1   MEDEVQNDANDQVADIAFDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTTF 60

Query: 64  SG 123
           SG
Sbjct: 61  SG 62

Query: 124 183
           
Sbjct: 121 62

Query: 184 190
           
Sbjct: 181 62

BLAST of CU113247 vs. NCBI nr
Match: gi|778656633|ref|XP_011649426.1| (PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 54/62 (87.10%), Postives = 54/62 (87.10%), Query Frame = -2

Query: 4   MEDEVQNDANDQVADIALDPTXXXXXXXVVLQDRTDEIVDKLAEKTESLSVSDGLETTTF 63
           MEDEVQNDANDQVADIA DPT       VVLQDRTDEIVDKLAEKTESLSVSDGLETTTF
Sbjct: 1   MEDEVQNDANDQVADIAFDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTTF 60

Query: 64  SG 123
           SG
Sbjct: 61  SG 62

Query: 124 183
           
Sbjct: 121 62

Query: 184 190
           
Sbjct: 181 62

BLAST of CU113247 vs. NCBI nr
Match: gi|659071819|ref|XP_008462075.1| (PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Cucumis melo])

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-14
Identity = 50/63 (79.37%), Postives = 50/63 (79.37%), Query Frame = -2

Query: 4   MEDEVQNDANDQVADIA-LDPTXXXXXXXVVLQDRTDEIVDKLAEKTESLSVSDGLETTT 63
           M DEVQND  DQVADIA  DPT       VVLQD TDEIVDKLAEKTESLSVSDGLETTT
Sbjct: 1   MADEVQNDVTDQVADIAPFDPTKKKKKKKVVLQDPTDEIVDKLAEKTESLSVSDGLETTT 60

Query: 64  FSG 123
           FSG
Sbjct: 61  FSG 63

Query: 124 183
           
Sbjct: 121 63

Query: 184 190
           
Sbjct: 181 63

BLAST of CU113247 vs. NCBI nr
Match: gi|778659350|ref|XP_004139463.2| (PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-13
Identity = 48/63 (76.19%), Postives = 48/63 (76.19%), Query Frame = -2

Query: 4   MEDEVQNDANDQVADIA-LDPTXXXXXXXVVLQDRTDEIVDKLAEKTESLSVSDGLETTT 63
           M DEVQND NDQVADIA  DPT       VVLQD TDE VDKLAEKTESLSVSDGLE  T
Sbjct: 1   MADEVQNDVNDQVADIAPFDPTKKKKKKKVVLQDPTDESVDKLAEKTESLSVSDGLEAAT 60

Query: 64  FSG 123
           FSG
Sbjct: 61  FSG 63

Query: 124 183
           
Sbjct: 121 63

Query: 184 190
           
Sbjct: 181 63

BLAST of CU113247 vs. NCBI nr
Match: gi|1009116240|ref|XP_015874665.1| (PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Ziziphus jujuba])

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-07
Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = -2

Query: 4   MEDEVQNDANDQVADIA-LDPTXXXXXXXVVLQDRTDEIVDKLAEKTESLSVSDGLETTT 63
           M DE QND  ++VA+I   DPT       VV+QD  D+ VDKLAEKTESLSV+DGLE +T
Sbjct: 1   MADENQNDVKEEVAEIVPFDPTKKKKKKKVVIQDPADDSVDKLAEKTESLSVADGLE-ST 60

Query: 64  FSG 123
           FSG
Sbjct: 61  FSG 62

Query: 124 183
           
Sbjct: 121 62

Query: 184 190
           
Sbjct: 181 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LT22_CUCSA5.3e-2087.10Uncharacterized protein OS=Cucumis sativus GN=Csa_1G028050 PE=4 SV=1[more]
A0A0A0LY41_CUCSA8.7e-1576.19Uncharacterized protein OS=Cucumis sativus GN=Csa_1G145930 PE=4 SV=1[more]
F6GU78_VITVI2.1e-0858.73Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g08180 PE=4 SV=... [more]
I3SDH8_LOTJA1.1e-0653.97Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
Match NameE-valueIdentityDescription
gi|700208831|gb|KGN63927.1|1.1e-1887.10hypothetical protein Csa_1G028050 [Cucumis sativus][more]
gi|778656633|ref|XP_011649426.1|1.1e-1887.10PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Cucumis... [more]
gi|659071819|ref|XP_008462075.1|1.2e-1479.37PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Cucumis melo... [more]
gi|778659350|ref|XP_004139463.2|1.8e-1376.19PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Cucumis sati... [more]
gi|1009116240|ref|XP_015874665.1|1.9e-0760.32PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Ziziphus juj... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G028050Csa1G028050gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0058005G0058005EST
G0210776G0210776EST