CU121616 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU121616
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 3097500 .. 3097880 (-)
Sequence length292
The following sequences are available for this feature:

transcribed_cluster sequence

GTCCAGAAAATGTGGTAGTCTCCAAACCATCAGAAACTGACAGACTTTCAGTTTTCTCTGCTAACTTGTCAACAATCTCATCAGTCCGATCCTGAAGTACAACCTTCTTCTTCTTCTTCTTCTTAGTTGGATCGAAGGCAATCTGCAAGAATAAACCATATAAATGCATCATGCTGTCGCATCTATGCTTGCACATGAACAACAATTCGTAACTGCTTGATAAAGAGACATAGTAAGATATGGGCCTGTAACTCGACAGCAGAATGCAGCTTCGATCCTTAGCCCCCGGCCG
Library categoryESTs
fruit (8DPP) library2
BLAST of CU121616 vs. NCBI nr
Match: gi|700208831|gb|KGN63927.1| (hypothetical protein Csa_1G028050 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 5.8e-11
Identity = 40/47 (85.11%), Postives = 40/47 (85.11%), Query Frame = -1

Query: 2   IAFDPTXXXXXXXVVLQDRTDEIVDKLAEKTESLSVSDGLETTTFSG 61
           IAFDPT       VVLQDRTDEIVDKLAEKTESLSVSDGLETTTFSG
Sbjct: 16  IAFDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTTFSG 62

Query: 62  121
           
Sbjct: 76  62

Query: 122 143
           
Sbjct: 136 62

BLAST of CU121616 vs. NCBI nr
Match: gi|778656633|ref|XP_011649426.1| (PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 5.8e-11
Identity = 40/47 (85.11%), Postives = 40/47 (85.11%), Query Frame = -1

Query: 2   IAFDPTXXXXXXXVVLQDRTDEIVDKLAEKTESLSVSDGLETTTFSG 61
           IAFDPT       VVLQDRTDEIVDKLAEKTESLSVSDGLETTTFSG
Sbjct: 16  IAFDPTKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLETTTFSG 62

Query: 62  121
           
Sbjct: 76  62

Query: 122 143
           
Sbjct: 136 62

BLAST of CU121616 vs. NCBI nr
Match: gi|659071819|ref|XP_008462075.1| (PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 4.1e-09
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = -1

Query: 2   FDPTXXXXXXXVVLQDRTDEIVDKLAEKTESLSVSDGLETTTFSG 61
           FDPT       VVLQD TDEIVDKLAEKTESLSVSDGLETTTFSG
Sbjct: 19  FDPTKKKKKKKVVLQDPTDEIVDKLAEKTESLSVSDGLETTTFSG 63

Query: 62  121
           
Sbjct: 79  63

Query: 122 137
           
Sbjct: 139 63

BLAST of CU121616 vs. NCBI nr
Match: gi|778659350|ref|XP_004139463.2| (PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-07
Identity = 34/45 (75.56%), Postives = 34/45 (75.56%), Query Frame = -1

Query: 2   FDPTXXXXXXXVVLQDRTDEIVDKLAEKTESLSVSDGLETTTFSG 61
           FDPT       VVLQD TDE VDKLAEKTESLSVSDGLE  TFSG
Sbjct: 19  FDPTKKKKKKKVVLQDPTDESVDKLAEKTESLSVSDGLEAATFSG 63

Query: 62  121
           
Sbjct: 79  63

Query: 122 137
           
Sbjct: 139 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|700208831|gb|KGN63927.1|5.8e-1185.11hypothetical protein Csa_1G028050 [Cucumis sativus][more]
gi|778656633|ref|XP_011649426.1|5.8e-1185.11PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Cucumis... [more]
gi|659071819|ref|XP_008462075.1|4.1e-0982.22PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Cucumis melo... [more]
gi|778659350|ref|XP_004139463.2|3.0e-0775.56PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Cucumis sati... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G028050Csa1G028050gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02KT80MFKNP3UI02KT80MEST
FKNP3UI02M62AWFKNP3UI02M62AWEST