CSPI01G04860 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G04860
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionEukaryotic translation initiation factor 2 beta subunit family protein
LocationChr1 : 3111935 .. 3116391 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGACGAAGTTCAGAATGATGCGAACGATCAGGTGGCAGATGTGAGTTTTTCTGTTCTTAACTATTATCTCTAAGAACATACATTTTCATTAAAAAATTTCACATATTGTGGGTATTCCCATTTTTGTGTGGGTATTCCCATTTTTGTTTTTCCCCTTTCAATTATTCATCCAAAGAAACCTAAATCTTTGAGTTGCCATTTGGCGAACCACACACTTGTGTGTTTCAACAGTCTAGGAGAATTTCATTCTATTATGTACAACTGTAGGTGTATAGCATTCTGGTAATCCAAGGAATAAATTGTATAACCCTTGAGGTGGCAGTCATTGATGATTTACCGAGTTACCCTAAATGCTATACTATTAGTTGTCTGGTCTTGTTTAAGATTACACAGTCCAATCTAGTTCTTGAAGTATTTTCTATTGGATTGTTCACTGGTGCTAAGGATCGAAGCTGCATTCTGCTGTCGAGTTGCAGGCTCATATCTTACTATGTCTCTTTATCAAGCAGTTACGAATTGTTGTTCATGTGCAAGCATAGATGCGACAGCATGATGCATTTATATGGTTTATTCTTGCAGATTGCCTTCGATCCAACTAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTTGTACTTCAGGATCGGACTGATGAGATTGTTGACAAGTTAGCAGAGAAAACTGAAAGTCTGTCAGGTATGAAAAGTTGGCATTACATTCCATTTCTATTTCATGATATTTTTATTTTGTTGGTGAAATGGGAATTGTTGATGATTTTTTTTGTGTCCTGCAGTTTCTGATGGTTTGGAGACTACCACATTTTCTGGACTTAAAAAGAAGAAGAAAAAACAAGTATGTCTTACTTTTCTTTGGTCAAGTTCTATTTAGTGATTGATCTCATTTATTTTAATTATAGGTAGAGGTTAGCAACGCATATGGCATATGCAAACATAACTTAATCCAAGTATTATATACCAATGTGTTTAAAATTACATTTATATGAATGTTAAAACACAATCATAGTCCATGAATTTCAAACTTTTGTATCAAAAATCTTTTAATCTTTCAATTTTGTGTCCGATGGGTCATATATGACTAATTGATTTAGGAGCTATCAATTTATTTTATGTCCAGTTGAACACTAAACATCCAGTTTTGTAACTAGTAGATACAATAATTAAGCATCTAATACAAAACCTATTTGACATTCAGATTATATGTCTAATATGATGTTTATTTTATAATCATTTTGAATATGCAACAAACCTTTCAATACTTTAGCCAACTATTAGTCCCCAAATTGAGAATTTAGTGTTCTATTAGACGTTTCGCTATAAAATACAAATCTGAAAGTTTATTTGTTAAACTTATTTAACCTTATATGAATTTGTGTCTCCTGTGACATAAAGTTCTCAATTCTCCATGGAGAAAAATGTGCACTTTTAATGTTCATTTTTGTGGCCAATGATGGCTTTATTTGAGTATTAGTCTCATTTCATTATTTTAGTGAAAAGTTATGTTTCTGTTTCAAAAATCTTCATATGAATTTGTATCTCCTCTAATGCAAAGTTCTCGACCTGCACATGGAGAACCGAGCGTATTTTTAACGTTCAGTGACCATATAGACACAAATTTAAAAGTTTATCGGCTAAACTTATGTACCTTTATACTATGATATCCCCGTTGGCATGAACTTAAAAGTTTATTGGCTAAACTTGTTTAACCTTATATTTATGATATCCTCGTTGGCATGAACTTAAAAGTTTATTGGCTAAACTTGTTTAACCTTATATTTATTGTATCTTCTCTGACATAAAGTCCTTGATTTTTCATGGAGGAGATTGAAGAAAGATGAACATTGTTAGAATATGTCGTATCTTACTAAAAACTTAAAAAGAAAAAGAGAACAAAAGTTTCACATGGCTCACCATGCACCTCAAGCTCGTTTCATTAAAAAGGACGACTTGCTTTAGAAGCACGAGTACTTTTTGAAGAACTGCACAATTGGCCTTCTATTGTATGGAGTTTCTCATTGAAAACGAGTTGTGTATATAATTTATACTTTTTTGTTTGCCATCTCCTTTTCAACTGTAGCCCTTTTCGACTGAAAAGTGATTATTATGCCAATAAGACCAAGTGGGGGAAATGAAGACCATAAGGGAGTTATTCTACAGTTTCGTTATCCTTGGGAGGGAAGTGATTGTGTCACACCTTGCCCAGCACACGTCTTTGCTTGGTATGCGAGACACGGTATGAATTTGAGTATTCTGACGCGTTAAACACCAAAATACTCAGCTTGAGGTCCTTAAGCTTTGCTATAGCATTGAGAAAGTTGGTGCATAGTTGTGCAAGCTCTTGTCAATCTTTATACATGGGGGATGGGGATCATCAATTTTTAATATAGAACCTGTTTGAATCCGTTGATGCTCTTTTAGGGCTTAATGGTTGGAGAGTCGAAAAATGGAATTCTTGGAGGGTTTGAAAGATCTCAAGTGAAGGTTTGGTCTTGTTTTAGATTCTGTGTTTTTGTGGACTATGCGACTTTGCCTATTTGTAATTATTAGTTAGGACTTGTTTAGTTTGTATTGAGATGTTAGAATCTCATATTGAAAAAGTCAAGGGAACTCACACTTCTTATAAGATAAGATAAAGATAGATGAGTTACTCCTCCCATTGCCATTGAGGTGGAACCTCATACTATCAAAAAGTTTGATCTGAAGCTGTTTTTATAGTTTGCAATCTCTCCTTTTCATTGGTTTTTTTATAAATGAATTCTCGAAATTTATTTTTTTAGAAAAATCTTAATTACTGTTGACGAGTGTCCACTGGAATATATCTTGTTACCAACTATGAGTGATTGTGTTCACTTCTAATTTCGACCTTCGTTATAGTTTTTTTCCCTTCCCTCTTATTTATTTCAGATGAATATGTGATTTGCATTGGGTGCAAGAGTCCGGACACTATTTTTTCAAAGGAGAACCGGCTTTTCTTTCTCAGATGCGAGAAGGTAAGGTTTTTTTCTTTTGGTTTTTGTTTTGTATTTTTTCCCTTGCAGTGTGTTTATCCTATGGTCGTGATTTTTGTGTGAATTTGTGTTAGTATATTAAATTTACCATTACCCACTACAAGCCTTTTGGGTCAATCGATGATTTAAGAAGGTGTGTTACTTTAGATGTCCTGTATTCGAACCCTTGCAATGTTGTTTTCTCCCCAATTAAAATTAATTTCCACTTATTAGGCCTTTCAAGTATTTCAACCCCACAAGTAATGAGAGTATTGTGATATAGATTAAATTTACCTTCACTCATTAGCTCGAGTTTTGGATTGAATTGGCGATTTAAGATGCTATGAGAGTAGGTTACTTCAGGATGTCGTTGATTAAGAGAGTAGGGGTATAATGGTCCTACCATTTTATAAATGAAATCTCAGTATTTATTTTAAAACATCTTAATTACTGTTGACGAGTGTCCACTGGAATACATCTTGTTACCAACTATGAGTGATTTTGTTCACTTCTAATTTCGACCTTCGTTATAGTTTTTTCCCTTCCCTCTCATTTATTTAGTTATTTCAGATGAATATGTGATTTGCATTGGGTGCAAGAGTCTGGACACTCTTCTTTCAAAGGAGAACCGGCTTTTCTTTCTCAGGTGCGAGATGGTAAGGTTTTTTTTTTTTTTTTTTGGTTTTGGTTTTGTTTTTTTTCCCTTGCAGTCTATTTATTATATGGTAGTGATTTTTGTGTGAGTTTCTGTTAGATAGTATATTAAATTTACCCTTATCCACTAGGTTAAGTTTTTAGGTCAATCGGTGATTTAAGATCTTGTGTTGCTTTAGATGTTCTGTATTTAAACTCTTGCAATATTGTCTCCTCTCTAATTAAAATTCATTTCAATTTTCACTTGTTAGGTTTTTCAAGTATTTCAAGTTCACAAGTGACATGACTATTGTGATGTATGATTAAATTTACGTTCACTCATCCACACAAGTTTTGGATTGGATTAAGGATTGGATTAAGATGCTATCAGAGGTTACTTCAAGATGTCGTTGATTAAGAAAGTAGGGGTATAATGGTCCTGCCATTTTATAAATTTCAGTGATTATTTTGATGCATTGTTGGGGAAATGATGAATCGGAATATTTCGTCCATTGTAAATTTATTTATTATGCCTGATTGTTTATTTAAGATCTGATATTTGAATAGATAATTTTTTATTTATCCCGTGCTTCTTCCTAGTAGAATGACAGCCGAAGATCGGACCTTTTCACGTGCTTGAAAATCTATTATTTAATTGTTAGTTCTTTTTAATATACATGAATATGATTAACTAGAAGCTATCGGTATTCTTTTCAATTTCACAAGCTTCGCGTTCTTTACCCTGTTTTTATCATACGGCTTAAGGTGTTTTGTGTTCGATCAACAGTGGTTCTGGACGATCAGTTGCTCCAAT

mRNA sequence

ATGGAGGACGAAGTTCAGAATGATGCGAACGATCAGGTGGCAGATATTGCCTTCGATCCAACTAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTTGTACTTCAGGATCGGACTGATGAGATTGTTGACAAGTTAGCAGAGAAAACTGAAAGTCTGTCAGTTTCTGATGGTTTGGAGACTACCACATTTTCTGGACTTAAAAAGAAGAAGAAAAAACAAACCATAAGGGAGTTATTCTACAGTTTCGTTATCCTTGGGAGGGAAGTGATTGTGTCACACCTTGCCCAGCACACGTCTTTGCTTGGTATGCGAGACACGGGCTTAATGGTTGGAGAGTCGAAAAATGGAATTCTTGGAGGGTTTGAAAGATCTCAAGTGAAGGTTTGGTCTTATGAATATGTGATTTGCATTGGGTGCAAGAGTCTGGACACTCTTCTTTCAAAGGAGAACCGGCTTTTCTTTCTCAGGTGCGAGATGTGGTTCTGGACGATCAGTTGCTCCAAT

Coding sequence (CDS)

ATGGAGGACGAAGTTCAGAATGATGCGAACGATCAGGTGGCAGATATTGCCTTCGATCCAACTAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTTGTACTTCAGGATCGGACTGATGAGATTGTTGACAAGTTAGCAGAGAAAACTGAAAGTCTGTCAGTTTCTGATGGTTTGGAGACTACCACATTTTCTGGACTTAAAAAGAAGAAGAAAAAACAAACCATAAGGGAGTTATTCTACAGTTTCGTTATCCTTGGGAGGGAAGTGATTGTGTCACACCTTGCCCAGCACACGTCTTTGCTTGGTATGCGAGACACGGGCTTAATGGTTGGAGAGTCGAAAAATGGAATTCTTGGAGGGTTTGAAAGATCTCAAGTGAAGGTTTGGTCTTATGAATATGTGATTTGCATTGGGTGCAAGAGTCTGGACACTCTTCTTTCAAAGGAGAACCGGCTTTTCTTTCTCAGGTGCGAGATGTGGTTCTGGACGATCAGTTGCTCCAAT
Homology
[Close]
BLAST of CSPI01G04860 vs. Swiss-Prot
Match: IF2B_MALDO (Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-10
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 1 

Query: 1  MEDEVQNDANDQV-ADIA-FDPTKKKKKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDG 60
          M D+ QN+  D+V ADIA FDPTKKKKKK+    VV+QD TD+ V KLAEK E+ + S+G
Sbjct: 1  MADDNQNEVKDEVVADIAPFDPTKKKKKKE----VVIQDTTDDSVGKLAEKAEACTASEG 60

Query: 61 LETTTFSGLKKKKKK 74
           E+ TF+GLKKKKKK
Sbjct: 61 QES-TFAGLKKKKKK 70

[Close]
BLAST of CSPI01G04860 vs. Swiss-Prot
Match: IF2B_WHEAT (Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.2e-09
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIA-FDPTKKKKKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGL 60
          M DE Q +  ++  +IA FDPTKKKKKKK    VV+QD  DE VDKLAEKTE LSV++  
Sbjct: 1  MADEEQMERKEEATEIAPFDPTKKKKKKK----VVIQDPADE-VDKLAEKTEGLSVTESG 60

Query: 61 ETTTFSGLKKKKKK 74
          E  +F GLKKKKKK
Sbjct: 61 E-ASFVGLKKKKKK 68

[Close]
BLAST of CSPI01G04860 vs. Swiss-Prot
Match: IF2B_ARATH (Eukaryotic translation initiation factor 2 subunit beta OS=Arabidopsis thaliana GN=EMB1401 PE=1 SV=3)

HSP 1 Score: 52.4 bits (124), Expect = 5.7e-06
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIAFDPTKKKKKKKKKKKVVLQDRTDEIVDKL-AEKTESLSVSDGL 60
          M DE+     +Q     FDP+KKKKKKK    VV+Q+  +++ +    EK++SL V+DGL
Sbjct: 1  MADEINEIREEQEQLAPFDPSKKKKKKK----VVIQEPVEDLAESSQTEKSDSLPVNDGL 60

Query: 61 ETTTFSGLKKKKKKQT 76
          E ++F+G+KKKKKK T
Sbjct: 61 E-SSFTGMKKKKKKPT 71

[Close]
BLAST of CSPI01G04860 vs. TrEMBL
Match: A0A0A0LT22_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G028050 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.9e-25
Identity = 70/74 (94.59%), Postives = 70/74 (94.59%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIAFDPTKKKKKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLE 60
          MEDEVQNDANDQVADIAFDPTK    KKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLE
Sbjct: 1  MEDEVQNDANDQVADIAFDPTK----KKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLE 60

Query: 61 TTTFSGLKKKKKKQ 75
          TTTFSGLKKKKKKQ
Sbjct: 61 TTTFSGLKKKKKKQ 70

[Close]
BLAST of CSPI01G04860 vs. TrEMBL
Match: A0A0A0LY41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G145930 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.8e-19
Identity = 63/74 (85.14%), Postives = 63/74 (85.14%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIA-FDPTKKKKKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGL 60
          M DEVQND NDQVADIA FDPTK    KKKKKKVVLQD TDE VDKLAEKTESLSVSDGL
Sbjct: 1  MADEVQNDVNDQVADIAPFDPTK----KKKKKKVVLQDPTDESVDKLAEKTESLSVSDGL 60

Query: 61 ETTTFSGLKKKKKK 74
          E  TFSGLKKKKKK
Sbjct: 61 EAATFSGLKKKKKK 70

[Close]
BLAST of CSPI01G04860 vs. TrEMBL
Match: F6GU78_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g08180 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.5e-13
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIA-FDPTKKKKKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGL 60
          M DE QN+  D+VA++A FDPTK    KKKKKKVV+QD  D+ VDKLAEKTESLSVS+G+
Sbjct: 1  MADENQNEVKDEVAELAPFDPTK----KKKKKKVVIQDPADDSVDKLAEKTESLSVSEGV 60

Query: 61 ETTTFSGLKKKKKK 74
          E  TFSG+KKKKKK
Sbjct: 61 E-NTFSGMKKKKKK 69

[Close]
BLAST of CSPI01G04860 vs. TrEMBL
Match: A0A067GCF0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024241mg PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-12
Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIA-FDPTKKKKKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGL 60
          M DE Q D  D+VA++A FDPTKKKKKKK    VV+QD +D+ VDKLAEKTE+LSVS+GL
Sbjct: 1  MTDENQVDVKDEVAELAPFDPTKKKKKKK----VVIQDPSDDSVDKLAEKTETLSVSEGL 60

Query: 61 ETTTFSGLKKKKKK 74
          E+ TF+GLKKKKKK
Sbjct: 61 ES-TFTGLKKKKKK 69

[Close]
BLAST of CSPI01G04860 vs. TrEMBL
Match: A0A067GPW2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024241mg PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-12
Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIA-FDPTKKKKKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGL 60
          M DE Q D  D+VA++A FDPTKKKKKKK    VV+QD +D+ VDKLAEKTE+LSVS+GL
Sbjct: 1  MTDENQVDVKDEVAELAPFDPTKKKKKKK----VVIQDPSDDSVDKLAEKTETLSVSEGL 60

Query: 61 ETTTFSGLKKKKKK 74
          E+ TF+GLKKKKKK
Sbjct: 61 ES-TFTGLKKKKKK 69

[Close]
BLAST of CSPI01G04860 vs. TAIR10
Match: AT5G20920.1 (AT5G20920.1 eukaryotic translation initiation factor 2 beta subunit)

HSP 1 Score: 52.4 bits (124), Expect = 3.2e-07
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIAFDPTKKKKKKKKKKKVVLQDRTDEIVDKL-AEKTESLSVSDGL 60
          M DE+     +Q     FDP+KKKKKKK    VV+Q+  +++ +    EK++SL V+DGL
Sbjct: 1  MADEINEIREEQEQLAPFDPSKKKKKKK----VVIQEPVEDLAESSQTEKSDSLPVNDGL 60

Query: 61 ETTTFSGLKKKKKKQT 76
          E ++F+G+KKKKKK T
Sbjct: 61 E-SSFTGMKKKKKKPT 71

[Close]
BLAST of CSPI01G04860 vs. TAIR10
Match: AT3G07920.1 (AT3G07920.1 Translation initiation factor IF2/IF5)

HSP 1 Score: 47.8 bits (112), Expect = 7.9e-06
Identity = 20/34 (58.82%), Postives = 27/34 (79.41%), Query Frame = 1 

Query: 125 SQVKVWSYEYVICIGCKSLDTLLSKENRLFFLRC 159
           S ++ +  +YV+CI CKS + +LSKENRLFFLRC
Sbjct: 112 SLLRGYILDYVMCIPCKSTEAILSKENRLFFLRC 145

[Close]
BLAST of CSPI01G04860 vs. NCBI nr
Match: gi|778656633|ref|XP_011649426.1| (PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 2.5e-25
Identity = 71/82 (86.59%), Postives = 72/82 (87.80%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIAFDPTKKKKKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLE 60
          MEDEVQNDANDQVADIAFDPTK    KKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLE
Sbjct: 1  MEDEVQNDANDQVADIAFDPTK----KKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLE 60

Query: 61 TTTFSGLKKKKKKQTIRELFYS 83
          TTTFSGLKKKKKKQ      +S
Sbjct: 61 TTTFSGLKKKKKKQVCLTFLWS 78

[Close]
BLAST of CSPI01G04860 vs. NCBI nr
Match: gi|700208831|gb|KGN63927.1| (hypothetical protein Csa_1G028050 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 4.2e-25
Identity = 70/74 (94.59%), Postives = 70/74 (94.59%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIAFDPTKKKKKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLE 60
          MEDEVQNDANDQVADIAFDPTK    KKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLE
Sbjct: 1  MEDEVQNDANDQVADIAFDPTK----KKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGLE 60

Query: 61 TTTFSGLKKKKKKQ 75
          TTTFSGLKKKKKKQ
Sbjct: 61 TTTFSGLKKKKKKQ 70

[Close]
BLAST of CSPI01G04860 vs. NCBI nr
Match: gi|659071819|ref|XP_008462075.1| (PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 65/74 (87.84%), Postives = 65/74 (87.84%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIA-FDPTKKKKKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGL 60
          M DEVQND  DQVADIA FDPTK    KKKKKKVVLQD TDEIVDKLAEKTESLSVSDGL
Sbjct: 1  MADEVQNDVTDQVADIAPFDPTK----KKKKKKVVLQDPTDEIVDKLAEKTESLSVSDGL 60

Query: 61 ETTTFSGLKKKKKK 74
          ETTTFSGLKKKKKK
Sbjct: 61 ETTTFSGLKKKKKK 70

[Close]
BLAST of CSPI01G04860 vs. NCBI nr
Match: gi|778659350|ref|XP_004139463.2| (PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-19
Identity = 63/74 (85.14%), Postives = 63/74 (85.14%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIA-FDPTKKKKKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGL 60
          M DEVQND NDQVADIA FDPTK    KKKKKKVVLQD TDE VDKLAEKTESLSVSDGL
Sbjct: 1  MADEVQNDVNDQVADIAPFDPTK----KKKKKKVVLQDPTDESVDKLAEKTESLSVSDGL 60

Query: 61 ETTTFSGLKKKKKK 74
          E  TFSGLKKKKKK
Sbjct: 61 EAATFSGLKKKKKK 70

[Close]
BLAST of CSPI01G04860 vs. NCBI nr
Match: gi|1009116240|ref|XP_015874665.1| (PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Ziziphus jujuba])

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13
Identity = 53/74 (71.62%), Postives = 60/74 (81.08%), Query Frame = 1 

Query: 1  MEDEVQNDANDQVADIA-FDPTKKKKKKKKKKKVVLQDRTDEIVDKLAEKTESLSVSDGL 60
          M DE QND  ++VA+I  FDPTKKKKKKK    VV+QD  D+ VDKLAEKTESLSV+DGL
Sbjct: 1  MADENQNDVKEEVAEIVPFDPTKKKKKKK----VVIQDPADDSVDKLAEKTESLSVADGL 60

Query: 61 ETTTFSGLKKKKKK 74
          E+ TFSGLKKKKKK
Sbjct: 61 ES-TFSGLKKKKKK 69

The following BLAST results are available for this feature:
BLAST of CSPI01G04860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IF2B_MALDO1.0e-1061.33Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 ... [more]
IF2B_WHEAT4.2e-0960.81Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=... [more]
IF2B_ARATH5.7e-0646.05Eukaryotic translation initiation factor 2 subunit beta OS=Arabidopsis thaliana ... [more]
BLAST of CSPI01G04860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT22_CUCSA2.9e-2594.59Uncharacterized protein OS=Cucumis sativus GN=Csa_1G028050 PE=4 SV=1[more]
A0A0A0LY41_CUCSA1.8e-1985.14Uncharacterized protein OS=Cucumis sativus GN=Csa_1G145930 PE=4 SV=1[more]
F6GU78_VITVI7.5e-1368.92Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g08180 PE=4 SV=... [more]
A0A067GCF0_CITSI1.7e-1268.92Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024241mg PE=4 SV=1[more]
A0A067GPW2_CITSI1.7e-1268.92Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024241mg PE=4 SV=1[more]
BLAST of CSPI01G04860 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G20920.13.2e-0746.05 eukaryotic translation initiation factor 2 beta subunit[more]
AT3G07920.17.9e-0658.82 Translation initiation factor IF2/IF5[more]
BLAST of CSPI01G04860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778656633|ref|XP_011649426.1|2.5e-2586.59PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Cucumis... [more]
gi|700208831|gb|KGN63927.1|4.2e-2594.59hypothetical protein Csa_1G028050 [Cucumis sativus][more]
gi|659071819|ref|XP_008462075.1|1.8e-2087.84PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Cucumis melo... [more]
gi|778659350|ref|XP_004139463.2|2.6e-1985.14PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Cucumis sati... [more]
gi|1009116240|ref|XP_015874665.1|2.2e-1371.62PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Ziziphus juj... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002735Transl_init_fac_IF2/IF5
IPR016190Transl_init_fac_IF2/IF5_Zn-bd
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006413 translational initiation
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G04860.1CSPI01G04860.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002735Translation initiation factor IF2/IF5PFAMPF01873eIF-5_eIF-2Bcoord: 129..159
score: 1.
IPR016190Translation initiation factor IF2/IF5, zinc-bindingunknownSSF75689Zinc-binding domain of translation initiation factor 2 betacoord: 134..160
score: 8.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G04860Csa1G028050Cucumber (Chinese Long) v2cpicuB000
CSPI01G04860CsaV3_1G004800Cucumber (Chinese Long) v3cpicucB001
CSPI01G04860Cucsa.112020Cucumber (Gy14) v1cgycpiB137
CSPI01G04860CsGy1G004710Cucumber (Gy14) v2cgybcpiB001
CSPI01G04860Carg07010Silver-seed gourdcarcpiB0556
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G04860Cucurbita maxima (Rimu)cmacpiB431
CSPI01G04860Cucurbita moschata (Rifu)cmocpiB421
CSPI01G04860Cucurbita pepo (Zucchini)cpecpiB535