Csa1G003480 (gene) Cucumber (Chinese Long) v2

NameCsa1G003480
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 580627 .. 580998 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACGGCCACCTCCGCCATTTTTGTTCTGCTTTCAGGTTTGTGTTTTCTCGTTTTCAATTCCGATAATTTAATGGGGCGGTGGCTACCAATTCTGGGGTTGTTGGCGGTGGCCGTAGTGGTATTGATGGCGGCCAGAGCCACGATGGTGGCGTGGATCACGGTGTTGGTGCTATTGGCATTCGCTGGAAACCGACGGCGAGTTCTGGTCAAAGATGGGAGAAAGATCACCGCCGATGTAGCCATGTACTTGGCCTCCGTAATCGTTAAAGAAAGAGGTCTTCTTGCTGTTGCTTTCGCCGCCCTCTTCAGCTTCCTCGCCGTCCTTCGTTCCACGGAGATCGATCTTCTTTCTTCTTTCTCCGCTTAA

mRNA sequence

ATGGCGACGGCCACCTCCGCCATTTTTGTTCTGCTTTCAGGTTTGTGTTTTCTCGTTTTCAATTCCGATAATTTAATGGGGCGGTGGCTACCAATTCTGGGGTTGTTGGCGGTGGCCGTAGTGGTATTGATGGCGGCCAGAGCCACGATGGTGGCGTGGATCACGGTGTTGGTGCTATTGGCATTCGCTGGAAACCGACGGCGAGTTCTGGTCAAAGATGGGAGAAAGATCACCGCCGATGTAGCCATGTACTTGGCCTCCGTAATCGTTAAAGAAAGAGGTCTTCTTGCTGTTGCTTTCGCCGCCCTCTTCAGCTTCCTCGCCGTCCTTCGTTCCACGGAGATCGATCTTCTTTCTTCTTTCTCCGCTTAA

Coding sequence (CDS)

ATGGCGACGGCCACCTCCGCCATTTTTGTTCTGCTTTCAGGTTTGTGTTTTCTCGTTTTCAATTCCGATAATTTAATGGGGCGGTGGCTACCAATTCTGGGGTTGTTGGCGGTGGCCGTAGTGGTATTGATGGCGGCCAGAGCCACGATGGTGGCGTGGATCACGGTGTTGGTGCTATTGGCATTCGCTGGAAACCGACGGCGAGTTCTGGTCAAAGATGGGAGAAAGATCACCGCCGATGTAGCCATGTACTTGGCCTCCGTAATCGTTAAAGAAAGAGGTCTTCTTGCTGTTGCTTTCGCCGCCCTCTTCAGCTTCCTCGCCGTCCTTCGTTCCACGGAGATCGATCTTCTTTCTTCTTTCTCCGCTTAA

Protein sequence

MATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIDLLSSFSA*
BLAST of Csa1G003480 vs. TrEMBL
Match: A0A0A0LNT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G003480 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.8e-57
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1

Query: 1   MATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVLL 60
           MATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVLL
Sbjct: 1   MATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVLL 60

Query: 61  AFAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIDLLSS 120
           AFAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIDLLSS
Sbjct: 61  AFAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIDLLSS 120

Query: 121 FSA 124
           FSA
Sbjct: 121 FSA 123

BLAST of Csa1G003480 vs. TrEMBL
Match: A0A0A0LRZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G003500 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.4e-55
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 1

Query: 2   ATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVLLA 61
           ATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVV LMAARATMVAWITVLVLLA
Sbjct: 7   ATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVALMAARATMVAWITVLVLLA 66

Query: 62  FAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIDLLSSF 121
           FAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEI LLSSF
Sbjct: 67  FAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIYLLSSF 126

Query: 122 SA 124
           SA
Sbjct: 127 SA 128

BLAST of Csa1G003480 vs. TrEMBL
Match: M5VW42_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026311mg PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.4e-23
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 1

Query: 2   ATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVLLA 61
           A  T+ +   L+ L  L+F +D++    LP+LG L V  +V++AAR TM+AWITVLVLL 
Sbjct: 9   AATTTFLLSFLASLWVLLFYNDHITVLLLPVLGALMVLALVVIAARTTMMAWITVLVLLT 68

Query: 62  FAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVL 111
           FAGNRRRVLV+ G+ ITADVA+YL  VI+KERGLLAVA A + S +A+L
Sbjct: 69  FAGNRRRVLVRRGKLITADVAIYLFQVIMKERGLLAVACATVLSLMAML 117

BLAST of Csa1G003480 vs. TrEMBL
Match: A0A0J8CFD2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g118220 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 1

Query: 22  SDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADV 81
           S  L    L + GL  +++V+++ AR TMVAWITVLVLLAF+G RRRVLV DGRKIT DV
Sbjct: 39  SSTLRTALLALAGLSLLSIVLIVVARTTMVAWITVLVLLAFSGKRRRVLVHDGRKITCDV 98

Query: 82  AMYLASVIVKERGLLAVAFAALFSFLAVLRSTEI 116
           AM+L  V+V ER  L+V  AA+ S LA+ + T +
Sbjct: 99  AMHLIKVMVNERQFLSVIGAAVLSLLAMAQVTRV 132

BLAST of Csa1G003480 vs. TrEMBL
Match: A0A0K9R4B8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_113590 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 49/86 (56.98%), Postives = 63/86 (73.26%), Query Frame = 1

Query: 30  LPILGLLAVAVVVLMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVI 89
           L ++GL  V++ +++ AR TMVAWITVLV+LAF+G RRRVLV DGRKIT DVAM L  V+
Sbjct: 45  LTVVGLSIVSICLVVVARTTMVAWITVLVVLAFSGTRRRVLVHDGRKITVDVAMNLIKVM 104

Query: 90  VKERGLLAVAFAALFSFLAVLRSTEI 116
            KER  L V  AA+ S LA+ + T +
Sbjct: 105 FKERQFLTVVCAAVVSLLAMAQVTRV 130

BLAST of Csa1G003480 vs. TAIR10
Match: AT5G50175.1 (AT5G50175.1 unknown protein)

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-13
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 1

Query: 40  VVVLMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVIVKE 93
           V+++ AARATMVAWITVLVLLAF+G RRRVL + G+ ITADVAM L  V+++E
Sbjct: 55  VLLVAAARATMVAWITVLVLLAFSGTRRRVLARRGKTITADVAMSLFRVLIRE 107

BLAST of Csa1G003480 vs. TAIR10
Match: AT4G03600.1 (AT4G03600.1 unknown protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 1

Query: 32  ILGLLAVAVVVLMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVIVK 91
           + G +++   + +A  A MV WI+V+VLLAF G  RRVLV +GRKIT +V  ++  V++K
Sbjct: 78  MFGAMSMVAAMTVAVPAVMVIWISVVVLLAFFGKSRRVLVVEGRKITREVVGFVFKVLLK 137

Query: 92  ERGLLAVAFAALFSFLAVLR 112
           E  ++A   A L  FL + R
Sbjct: 138 EGNVVAAFCAVLAYFLLIRR 157

BLAST of Csa1G003480 vs. TAIR10
Match: AT1G03730.1 (AT1G03730.1 unknown protein)

HSP 1 Score: 60.5 bits (145), Expect = 8.7e-10
Identity = 31/78 (39.74%), Postives = 45/78 (57.69%), Query Frame = 1

Query: 32  ILGLLAVAVVVLMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVIVK 91
           + G +++     +A  A MV WI+V+VLLAF G  RRVLV + RKIT +V  ++  V++K
Sbjct: 83  VFGAMSMVAAAAVAVPAVMVIWISVVVLLAFFGKSRRVLVVEARKITREVFGFVFKVLLK 142

Query: 92  ERGLLAVAFAALFSFLAV 110
           E   +A   A L  F+ +
Sbjct: 143 EGNAVAAVCAVLGYFILI 160

BLAST of Csa1G003480 vs. TAIR10
Match: AT4G28330.1 (AT4G28330.1 unknown protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-09
Identity = 28/76 (36.84%), Postives = 49/76 (64.47%), Query Frame = 1

Query: 32  ILGLLAVAVVVLMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVIVK 91
           + G+L++A  + +A  A +V WI+V+V +AFAG  R+ +V +GRK+T ++A ++  V++K
Sbjct: 74  VFGVLSMAAALFIAVPAIVVIWISVVVTMAFAGKSRKRVVIEGRKVTKEIAGFVFRVLLK 133

Query: 92  ERGLLAVAFAALFSFL 108
           E   +A+  A L  F+
Sbjct: 134 EGNFVALLCALLAYFV 149

BLAST of Csa1G003480 vs. TAIR10
Match: AT4G28340.1 (AT4G28340.1 unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-08
Identity = 26/76 (34.21%), Postives = 47/76 (61.84%), Query Frame = 1

Query: 32  ILGLLAVAVVVLMAARATMVAWITVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVIVK 91
           + G+L++A  + +A  A +V WI+V+V +AF    R+ +V +GRK+T ++A Y+  V++K
Sbjct: 74  VFGVLSMAAALFIAVPAIVVIWISVVVTIAFPVKSRKKVVIEGRKVTKEIAGYVFKVLLK 133

Query: 92  ERGLLAVAFAALFSFL 108
           E   +A+  A +  F+
Sbjct: 134 EGNFVALLCAVIAYFV 149

BLAST of Csa1G003480 vs. NCBI nr
Match: gi|700208434|gb|KGN63530.1| (hypothetical protein Csa_1G003480 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 4.0e-57
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1

Query: 1   MATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVLL 60
           MATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVLL
Sbjct: 1   MATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVLL 60

Query: 61  AFAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIDLLSS 120
           AFAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIDLLSS
Sbjct: 61  AFAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIDLLSS 120

Query: 121 FSA 124
           FSA
Sbjct: 121 FSA 123

BLAST of Csa1G003480 vs. NCBI nr
Match: gi|700208436|gb|KGN63532.1| (hypothetical protein Csa_1G003500 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 4.9e-55
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 1

Query: 2   ATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVLLA 61
           ATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVV LMAARATMVAWITVLVLLA
Sbjct: 7   ATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVALMAARATMVAWITVLVLLA 66

Query: 62  FAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIDLLSSF 121
           FAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEI LLSSF
Sbjct: 67  FAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIYLLSSF 126

Query: 122 SA 124
           SA
Sbjct: 127 SA 128

BLAST of Csa1G003480 vs. NCBI nr
Match: gi|659129057|ref|XP_008464506.1| (PREDICTED: uncharacterized protein LOC103502369 [Cucumis melo])

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-52
Identity = 114/122 (93.44%), Postives = 118/122 (96.72%), Query Frame = 1

Query: 2   ATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVLLA 61
           ATATSAIFVLLSGLC++VFNSDNLMGRWLPILGLLAVA V LMAARATMVAWITVLVLLA
Sbjct: 13  ATATSAIFVLLSGLCYVVFNSDNLMGRWLPILGLLAVAGVALMAARATMVAWITVLVLLA 72

Query: 62  FAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIDLLSSF 121
           FAGNRRRVLVK GRKITADVAMYLASV+VKERGLLAVAFAALFSF+AV RSTEIDLLSSF
Sbjct: 73  FAGNRRRVLVKHGRKITADVAMYLASVMVKERGLLAVAFAALFSFVAVARSTEIDLLSSF 132

Query: 122 SA 124
           SA
Sbjct: 133 SA 134

BLAST of Csa1G003480 vs. NCBI nr
Match: gi|595792421|ref|XP_007199959.1| (hypothetical protein PRUPE_ppa026311mg [Prunus persica])

HSP 1 Score: 115.9 bits (289), Expect = 4.9e-23
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 1

Query: 2   ATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVLLA 61
           A  T+ +   L+ L  L+F +D++    LP+LG L V  +V++AAR TM+AWITVLVLL 
Sbjct: 9   AATTTFLLSFLASLWVLLFYNDHITVLLLPVLGALMVLALVVIAARTTMMAWITVLVLLT 68

Query: 62  FAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVL 111
           FAGNRRRVLV+ G+ ITADVA+YL  VI+KERGLLAVA A + S +A+L
Sbjct: 69  FAGNRRRVLVRRGKLITADVAIYLFQVIMKERGLLAVACATVLSLMAML 117

BLAST of Csa1G003480 vs. NCBI nr
Match: gi|645264763|ref|XP_008237833.1| (PREDICTED: uncharacterized protein LOC103336555 [Prunus mume])

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 65/111 (58.56%), Postives = 82/111 (73.87%), Query Frame = 1

Query: 2   ATATSAIFVLLSGLCFLVFN--SDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVL 61
           ATAT  +  L S   FL +N  +D++    LP+LG L V  +V++AARATM+AWITVLVL
Sbjct: 10  ATATFLLSFLASLWVFLFYNDHNDHITVLLLPVLGALMVLALVVIAARATMMAWITVLVL 69

Query: 62  LAFAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVL 111
           L FAGN RRVLV+ G+ ITADVA+YL  VI+KERGLLAVA A + S +A+L
Sbjct: 70  LTFAGNHRRVLVRRGKLITADVAIYLFRVIIKERGLLAVACATILSLMAML 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LNT4_CUCSA2.8e-57100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G003480 PE=4 SV=1[more]
A0A0A0LRZ2_CUCSA3.4e-5598.36Uncharacterized protein OS=Cucumis sativus GN=Csa_1G003500 PE=4 SV=1[more]
M5VW42_PRUPE3.4e-2356.88Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026311mg PE=4 SV=1[more]
A0A0J8CFD2_BETVU1.3e-1755.32Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g118220 PE=4 S... [more]
A0A0K9R4B8_SPIOL1.4e-1656.98Uncharacterized protein OS=Spinacia oleracea GN=SOVF_113590 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G50175.12.9e-1367.92 unknown protein[more]
AT4G03600.12.7e-1142.50 unknown protein[more]
AT1G03730.18.7e-1039.74 unknown protein[more]
AT4G28330.11.9e-0936.84 unknown protein[more]
AT4G28340.12.1e-0834.21 unknown protein[more]
Match NameE-valueIdentityDescription
gi|700208434|gb|KGN63530.1|4.0e-57100.00hypothetical protein Csa_1G003480 [Cucumis sativus][more]
gi|700208436|gb|KGN63532.1|4.9e-5598.36hypothetical protein Csa_1G003500 [Cucumis sativus][more]
gi|659129057|ref|XP_008464506.1|1.7e-5293.44PREDICTED: uncharacterized protein LOC103502369 [Cucumis melo][more]
gi|595792421|ref|XP_007199959.1|4.9e-2356.88hypothetical protein PRUPE_ppa026311mg [Prunus persica][more]
gi|645264763|ref|XP_008237833.1|1.1e-2258.56PREDICTED: uncharacterized protein LOC103336555 [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU086925cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G003480.1Csa1G003480.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU086925CU086925transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34656FAMILY NOT NAMEDcoord: 32..122
score: 1.2
NoneNo IPR availablePANTHERPTHR34656:SF2SUBFAMILY NOT NAMEDcoord: 32..122
score: 1.2

The following gene(s) are paralogous to this gene:

None