CmoCh11G000690 (gene) Cucurbita moschata (Rifu)

NameCmoCh11G000690
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionBnaCnng59370D protein
LocationCmo_Chr11 : 325112 .. 326246 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCGAGGTTAAACAACTTGATCTTCTTTATTGGATCCGATCGACTTACTTATTTTCCTATCATTTACCCATTTAAGTTGTATTATACTAGTTGGCAACACTAATTAATCACAATTAAATAAATATATGATTTCATTAATATAAAACTTTAGGACATAAAGAGAAAAAAAAAGGAATGAAATTTATATTAAAAATATATGGGCACATGCAGAGAGTAGTCCCTAAATTATGCAATTGGCAGTTGACTTACTACTTCAATCAAAGCTCATTATCAAGTACCAACCTTGTTATAAAACATCTTATATCCCTAATTTTAGGGATTTATATCAAATTTAATCATAAATTTTAATTTCGTCAAATTAAGTGTCTATTCAATTTTCACTAAATATTAGTTTTATAAGAATATTTTAAAGAAAAAAAAATGATTGCTGAAATAAAAATATCATATACTATAAATTGCAATATTTTATGAATTGAAGGCAGAAATTAGTTTTGTAGCTTGAAAAGATATATTGGCCCCCACATAATGAGGTCGAGCACCTCCCCATGTGCAGCACATGGCTGCCAATTCCTTTCCCAAACACCAATCTTGAACCAGCTTTGAAATAATCAATCAAAATCCAAGATTCAATTAATATCCATTTGAGTTGTCATAATAATTCATATATAAAAACAAATAACAAACGGAAAGTTTGCATAAAAAGCACATACTCTCGTCAGATTGCTCTGTAACGCAAAGCGCAGAAGAATGTCGACTCCGGTGACGGAGGCCGTTTTGCTGTCGGGGATATTTCTGTTGCTTTCAGGTTCGTGTATTGTCGTTCTTAATTTTGATTTGATGGGGCGATGGGTTCCAATTGTGGGGTTGTTAGTGGTTGCCGGAGTGGCGGTGGTGGCCGCGAGAGCCACCATGGTGGCGTGGATCACGGTGTTGGTGCTGTTGGCGTTCGCCGGAAACCGACGGCGGGTTTTGGTGAAACAGGGAAGACAGATCACCGCTGATGTAGCCATGTACTTGGGCGCCGTGTTGGTTAAAGAAAGAGGGCTTGTTGCTGTTGGTTTCGCCGCCGTCCTCAGCCTCGTCGCCGTGGTTCGGTCGATGGAGATCGATTCACTTTCTGTTTCTGTTTAA

mRNA sequence

ATGTCGCGAGGTTCGTGTATTGTCGTTCTTAATTTTGATTTGATGGGGCGATGGGTTCCAATTGTGGGGTTGTTAGTGGTTGCCGGAGTGGCGGTGGTGGCCGCGAGAGCCACCATGGTGGCGTGGATCACGGTGTTGGTGCTGTTGGCGTTCGCCGGAAACCGACGGCGGGTTTTGGTGAAACAGGGAAGACAGATCACCGCTGATGTAGCCATGTACTTGGGCGCCGTGTTGGTTAAAGAAAGAGGGCTTGTTGCTGTTGGTTTCGCCGCCGTCCTCAGCCTCGTCGCCGTGGTTCGGTCGATGGAGATCGATTCACTTTCTGTTTCTGTTTAA

Coding sequence (CDS)

ATGTCGCGAGGTTCGTGTATTGTCGTTCTTAATTTTGATTTGATGGGGCGATGGGTTCCAATTGTGGGGTTGTTAGTGGTTGCCGGAGTGGCGGTGGTGGCCGCGAGAGCCACCATGGTGGCGTGGATCACGGTGTTGGTGCTGTTGGCGTTCGCCGGAAACCGACGGCGGGTTTTGGTGAAACAGGGAAGACAGATCACCGCTGATGTAGCCATGTACTTGGGCGCCGTGTTGGTTAAAGAAAGAGGGCTTGTTGCTGTTGGTTTCGCCGCCGTCCTCAGCCTCGTCGCCGTGGTTCGGTCGATGGAGATCGATTCACTTTCTGTTTCTGTTTAA
BLAST of CmoCh11G000690 vs. TrEMBL
Match: A0A0A0LNT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G003480 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.9e-29
Identity = 79/106 (74.53%), Postives = 91/106 (85.85%), Query Frame = 1

Query: 4   GSCIVVLNFD-LMGRWVPIVGLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQ 63
           G C +V N D LMGRW+PI+GLL VA V ++AARATMVAWITVLVLLAFAGNRRRVLVK 
Sbjct: 14  GLCFLVFNSDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVLLAFAGNRRRVLVKD 73

Query: 64  GRQITADVAMYLGAVLVKERGLVAVGFAAVLSLVAVVRSMEIDSLS 109
           GR+ITADVAMYL +V+VKERGL+AV FAA+ S +AV+RS EID LS
Sbjct: 74  GRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIDLLS 119

BLAST of CmoCh11G000690 vs. TrEMBL
Match: A0A0A0LRZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G003500 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-28
Identity = 79/106 (74.53%), Postives = 91/106 (85.85%), Query Frame = 1

Query: 4   GSCIVVLNFD-LMGRWVPIVGLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQ 63
           G C +V N D LMGRW+PI+GLL VA VA++AARATMVAWITVLVLLAFAGNRRRVLVK 
Sbjct: 19  GLCFLVFNSDNLMGRWLPILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKD 78

Query: 64  GRQITADVAMYLGAVLVKERGLVAVGFAAVLSLVAVVRSMEIDSLS 109
           GR+ITADVAMYL +V+VKERGL+AV FAA+ S +AV+RS EI  LS
Sbjct: 79  GRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIYLLS 124

BLAST of CmoCh11G000690 vs. TrEMBL
Match: M5VW42_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026311mg PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.2e-16
Identity = 52/81 (64.20%), Postives = 69/81 (85.19%), Query Frame = 1

Query: 19  VPIVGLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVL 78
           +P++G L+V  + V+AAR TM+AWITVLVLL FAGNRRRVLV++G+ ITADVA+YL  V+
Sbjct: 37  LPVLGALMVLALVVIAARTTMMAWITVLVLLTFAGNRRRVLVRRGKLITADVAIYLFQVI 96

Query: 79  VKERGLVAVGFAAVLSLVAVV 100
           +KERGL+AV  A VLSL+A++
Sbjct: 97  MKERGLLAVACATVLSLMAML 117

BLAST of CmoCh11G000690 vs. TrEMBL
Match: W9S826_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002064 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.4e-13
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 1

Query: 39  MVAWITVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVGFAAVLSLVAV 98
           MV WITVLVLLAFAGNRRRVLVK+GR+IT DVAM+L  VLVKERG VAV  A V SL+AV
Sbjct: 1   MVTWITVLVLLAFAGNRRRVLVKRGRRITNDVAMFLVGVLVKERGFVAVACATVFSLMAV 60

Query: 99  V 100
           +
Sbjct: 61  I 61

BLAST of CmoCh11G000690 vs. TrEMBL
Match: A0A103XWH6_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_023599 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.5e-11
Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = 1

Query: 19  VPIVGLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVL 78
           V +VG++++AG+ VV  R T+V WI VLV++AFAG RRRVL  +GR+IT DVAM L  V+
Sbjct: 57  VGVVGVVLIAGLVVVMVRTTIVTWIMVLVMMAFAGKRRRVLAVEGRKITGDVAMQLLKVV 116

Query: 79  VKERGLVAVGFAAVLSLVAVV 100
           +KER +VAV  A  LS +A+V
Sbjct: 117 IKERSIVAVACATFLSSMAMV 137

BLAST of CmoCh11G000690 vs. TAIR10
Match: AT5G50175.1 (AT5G50175.1 unknown protein)

HSP 1 Score: 65.1 bits (157), Expect = 3.2e-11
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 1

Query: 22  VGLLVVAGVAVV----AARATMVAWITVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAV 81
           +G  + A +++V    AARATMVAWITVLVLLAF+G RRRVL ++G+ ITADVAM L  V
Sbjct: 44  IGFFLAAALSLVLLVAAARATMVAWITVLVLLAFSGTRRRVLARRGKTITADVAMSLFRV 103

BLAST of CmoCh11G000690 vs. TAIR10
Match: AT4G03600.1 (AT4G03600.1 unknown protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.6e-07
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 1

Query: 23  GLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKER 82
           G + +     VA  A MV WI+V+VLLAF G  RRVLV +GR+IT +V  ++  VL+KE 
Sbjct: 80  GAMSMVAAMTVAVPAVMVIWISVVVLLAFFGKSRRVLVVEGRKITREVVGFVFKVLLKE- 139

Query: 83  GLVAVGFAAVLSLVAVVR 101
           G V   F AVL+   ++R
Sbjct: 140 GNVVAAFCAVLAYFLLIR 156

BLAST of CmoCh11G000690 vs. TAIR10
Match: AT1G03730.1 (AT1G03730.1 unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 5.2e-06
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 1

Query: 21  IVGLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVK 80
           + G + +   A VA  A MV WI+V+VLLAF G  RRVLV + R+IT +V  ++  VL+K
Sbjct: 83  VFGAMSMVAAAAVAVPAVMVIWISVVVLLAFFGKSRRVLVVEARKITREVFGFVFKVLLK 142

Query: 81  ERGLVAVGFAAVLSLVAVVRSMEIDSL 108
           E   VA    AVL    ++R  + DS+
Sbjct: 143 EGNAVA-AVCAVLGYFILIRK-DFDSI 167

BLAST of CmoCh11G000690 vs. NCBI nr
Match: gi|659129057|ref|XP_008464506.1| (PREDICTED: uncharacterized protein LOC103502369 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 4.4e-31
Identity = 83/106 (78.30%), Postives = 92/106 (86.79%), Query Frame = 1

Query: 4   GSCIVVLNFD-LMGRWVPIVGLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQ 63
           G C VV N D LMGRW+PI+GLL VAGVA++AARATMVAWITVLVLLAFAGNRRRVLVK 
Sbjct: 25  GLCYVVFNSDNLMGRWLPILGLLAVAGVALMAARATMVAWITVLVLLAFAGNRRRVLVKH 84

Query: 64  GRQITADVAMYLGAVLVKERGLVAVGFAAVLSLVAVVRSMEIDSLS 109
           GR+ITADVAMYL +V+VKERGL+AV FAA+ S VAV RS EID LS
Sbjct: 85  GRKITADVAMYLASVMVKERGLLAVAFAALFSFVAVARSTEIDLLS 130

BLAST of CmoCh11G000690 vs. NCBI nr
Match: gi|700208434|gb|KGN63530.1| (hypothetical protein Csa_1G003480 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 4.1e-29
Identity = 79/106 (74.53%), Postives = 91/106 (85.85%), Query Frame = 1

Query: 4   GSCIVVLNFD-LMGRWVPIVGLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQ 63
           G C +V N D LMGRW+PI+GLL VA V ++AARATMVAWITVLVLLAFAGNRRRVLVK 
Sbjct: 14  GLCFLVFNSDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVLLAFAGNRRRVLVKD 73

Query: 64  GRQITADVAMYLGAVLVKERGLVAVGFAAVLSLVAVVRSMEIDSLS 109
           GR+ITADVAMYL +V+VKERGL+AV FAA+ S +AV+RS EID LS
Sbjct: 74  GRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIDLLS 119

BLAST of CmoCh11G000690 vs. NCBI nr
Match: gi|700208436|gb|KGN63532.1| (hypothetical protein Csa_1G003500 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-28
Identity = 79/106 (74.53%), Postives = 91/106 (85.85%), Query Frame = 1

Query: 4   GSCIVVLNFD-LMGRWVPIVGLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQ 63
           G C +V N D LMGRW+PI+GLL VA VA++AARATMVAWITVLVLLAFAGNRRRVLVK 
Sbjct: 19  GLCFLVFNSDNLMGRWLPILGLLAVAVVALMAARATMVAWITVLVLLAFAGNRRRVLVKD 78

Query: 64  GRQITADVAMYLGAVLVKERGLVAVGFAAVLSLVAVVRSMEIDSLS 109
           GR+ITADVAMYL +V+VKERGL+AV FAA+ S +AV+RS EI  LS
Sbjct: 79  GRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIYLLS 124

BLAST of CmoCh11G000690 vs. NCBI nr
Match: gi|645264763|ref|XP_008237833.1| (PREDICTED: uncharacterized protein LOC103336555 [Prunus mume])

HSP 1 Score: 91.7 bits (226), Expect = 8.9e-16
Identity = 51/81 (62.96%), Postives = 69/81 (85.19%), Query Frame = 1

Query: 19  VPIVGLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVL 78
           +P++G L+V  + V+AARATM+AWITVLVLL FAGN RRVLV++G+ ITADVA+YL  V+
Sbjct: 40  LPVLGALMVLALVVIAARATMMAWITVLVLLTFAGNHRRVLVRRGKLITADVAIYLFRVI 99

Query: 79  VKERGLVAVGFAAVLSLVAVV 100
           +KERGL+AV  A +LSL+A++
Sbjct: 100 IKERGLLAVACATILSLMAML 120

BLAST of CmoCh11G000690 vs. NCBI nr
Match: gi|595792421|ref|XP_007199959.1| (hypothetical protein PRUPE_ppa026311mg [Prunus persica])

HSP 1 Score: 91.7 bits (226), Expect = 8.9e-16
Identity = 52/81 (64.20%), Postives = 69/81 (85.19%), Query Frame = 1

Query: 19  VPIVGLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVL 78
           +P++G L+V  + V+AAR TM+AWITVLVLL FAGNRRRVLV++G+ ITADVA+YL  V+
Sbjct: 37  LPVLGALMVLALVVIAARTTMMAWITVLVLLTFAGNRRRVLVRRGKLITADVAIYLFQVI 96

Query: 79  VKERGLVAVGFAAVLSLVAVV 100
           +KERGL+AV  A VLSL+A++
Sbjct: 97  MKERGLLAVACATVLSLMAML 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LNT4_CUCSA2.9e-2974.53Uncharacterized protein OS=Cucumis sativus GN=Csa_1G003480 PE=4 SV=1[more]
A0A0A0LRZ2_CUCSA1.1e-2874.53Uncharacterized protein OS=Cucumis sativus GN=Csa_1G003500 PE=4 SV=1[more]
M5VW42_PRUPE6.2e-1664.20Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026311mg PE=4 SV=1[more]
W9S826_9ROSA6.4e-1377.05Uncharacterized protein OS=Morus notabilis GN=L484_002064 PE=4 SV=1[more]
A0A103XWH6_CYNCS3.5e-1155.56Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_023599 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT5G50175.13.2e-1160.94 unknown protein[more]
AT4G03600.13.6e-0746.15 unknown protein[more]
AT1G03730.15.2e-0642.53 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659129057|ref|XP_008464506.1|4.4e-3178.30PREDICTED: uncharacterized protein LOC103502369 [Cucumis melo][more]
gi|700208434|gb|KGN63530.1|4.1e-2974.53hypothetical protein Csa_1G003480 [Cucumis sativus][more]
gi|700208436|gb|KGN63532.1|1.6e-2874.53hypothetical protein Csa_1G003500 [Cucumis sativus][more]
gi|645264763|ref|XP_008237833.1|8.9e-1662.96PREDICTED: uncharacterized protein LOC103336555 [Prunus mume][more]
gi|595792421|ref|XP_007199959.1|8.9e-1664.20hypothetical protein PRUPE_ppa026311mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G000690.1CmoCh11G000690.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34656FAMILY NOT NAMEDcoord: 21..111
score: 1.9
NoneNo IPR availablePANTHERPTHR34656:SF2SUBFAMILY NOT NAMEDcoord: 21..111
score: 1.9

The following gene(s) are paralogous to this gene:

None