Carg20199 (gene) Silver-seed gourd

NameCarg20199
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPyrroline-5-carboxylate reductase 1
LocationCucurbita_argyrosperma_scaffold_154 : 188634 .. 189017 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACTCCGGTGACGGAGGCCGTTTTGCTGTCGGGGATATTTCTGTTGCTTTCAGGTTCGTGTATTGTCGTTCTTAATTTCGATTTGATGGGGCGATGGGTTCCAATTGTGGGGTTGTTAGTGGTTGCCGGAGTGGCGGTGGTGGCCGCGAGAGCCACCATGGTGGCGTGGATCACGGTGTTGGTGCTGTTGGCGTTCGCTGGAAACCGACGGCGGGTTTTGGTGAAACAGGGGAGACAGATCACCGCTGATGTAGCCATGTACTTGGGCGCCGTGTTGGTTAAAGAAAGAGGGCTTGTTGCTGTTGCTTTCGCCGCCGTCCTCAGCTTCTTCGCCGTGGTTCGGTCGATGGAGATCGATTCACTTTCTGTTTCTGTTTAA

mRNA sequence

ATGTCGACTCCGGTGACGGAGGCCGTTTTGCTGTCGGGGATATTTCTGTTGCTTTCAGGTTCGTGTATTGTCGTTCTTAATTTCGATTTGATGGGGCGATGGGTTCCAATTGTGGGGTTGTTAGTGGTTGCCGGAGTGGCGGTGGTGGCCGCGAGAGCCACCATGGTGGCGTGGATCACGGTGTTGGTGCTGTTGGCGTTCGCTGGAAACCGACGGCGGGTTTTGGTGAAACAGGGGAGACAGATCACCGCTGATGTAGCCATGTACTTGGGCGCCGTGTTGGTTAAAGAAAGAGGGCTTGTTGCTGTTGCTTTCGCCGCCGTCCTCAGCTTCTTCGCCGTGGTTCGGTCGATGGAGATCGATTCACTTTCTGTTTCTGTTTAA

Coding sequence (CDS)

ATGTCGACTCCGGTGACGGAGGCCGTTTTGCTGTCGGGGATATTTCTGTTGCTTTCAGGTTCGTGTATTGTCGTTCTTAATTTCGATTTGATGGGGCGATGGGTTCCAATTGTGGGGTTGTTAGTGGTTGCCGGAGTGGCGGTGGTGGCCGCGAGAGCCACCATGGTGGCGTGGATCACGGTGTTGGTGCTGTTGGCGTTCGCTGGAAACCGACGGCGGGTTTTGGTGAAACAGGGGAGACAGATCACCGCTGATGTAGCCATGTACTTGGGCGCCGTGTTGGTTAAAGAAAGAGGGCTTGTTGCTGTTGCTTTCGCCGCCGTCCTCAGCTTCTTCGCCGTGGTTCGGTCGATGGAGATCGATTCACTTTCTGTTTCTGTTTAA

Protein sequence

MSTPVTEAVLLSGIFLLLSGSCIVVLNFDLMGRWVPIVGLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVAFAAVLSFFAVVRSMEIDSLSVSV
BLAST of Carg20199 vs. NCBI nr
Match: XP_023530771.1 (uncharacterized protein LOC111793221 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216.5 bits (550), Expect = 5.3e-53
Identity = 126/127 (99.21%), Postives = 126/127 (99.21%), Query Frame = 0

Query: 1   MSTPVTEAVLLSGIFLLLSGSCIVVLNFDLMGRWVPIVGLLVVAGVAVVAARATMVAWIT 60
           MSTPVTEAVLLSGIFLLLSGSCIVVLNFDLMGRWVPIVGLLVVAGVAVVAARATMVAWIT
Sbjct: 1   MSTPVTEAVLLSGIFLLLSGSCIVVLNFDLMGRWVPIVGLLVVAGVAVVAARATMVAWIT 60

Query: 61  VLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVAFAAVLSFFAVVRSMEI 120
           VLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVAFAAVLSF AVVRSMEI
Sbjct: 61  VLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVAFAAVLSFVAVVRSMEI 120

Query: 121 DSLSVSV 128
           DSLSVSV
Sbjct: 121 DSLSVSV 127

BLAST of Carg20199 vs. NCBI nr
Match: XP_022933693.1 (uncharacterized protein LOC111441029 [Cucurbita moschata])

HSP 1 Score: 212.6 bits (540), Expect = 7.7e-52
Identity = 124/127 (97.64%), Postives = 124/127 (97.64%), Query Frame = 0

Query: 1   MSTPVTEAVLLSGIFLLLSGSCIVVLNFDLMGRWVPIVGLLVVAGVAVVAARATMVAWIT 60
           MSTPVTEAVLLSGIFLLLSGSCIVVLNFDLMGRWVPIVGLLVVAGVAVVAARATMVAWIT
Sbjct: 1   MSTPVTEAVLLSGIFLLLSGSCIVVLNFDLMGRWVPIVGLLVVAGVAVVAARATMVAWIT 60

Query: 61  VLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVAFAAVLSFFAVVRSMEI 120
           VLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAV FAAVLS  AVVRSMEI
Sbjct: 61  VLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVGFAAVLSLVAVVRSMEI 120

Query: 121 DSLSVSV 128
           DSLSVSV
Sbjct: 121 DSLSVSV 127

BLAST of Carg20199 vs. NCBI nr
Match: XP_023004957.1 (uncharacterized protein LOC111498104 [Cucurbita maxima])

HSP 1 Score: 212.6 bits (540), Expect = 7.7e-52
Identity = 124/127 (97.64%), Postives = 124/127 (97.64%), Query Frame = 0

Query: 1   MSTPVTEAVLLSGIFLLLSGSCIVVLNFDLMGRWVPIVGLLVVAGVAVVAARATMVAWIT 60
           MSTP TEAVLLSGIFLLLSGSCIVVLNFDLMGRWVPIVGLLVVAGVAVVAARATMVAWIT
Sbjct: 1   MSTPATEAVLLSGIFLLLSGSCIVVLNFDLMGRWVPIVGLLVVAGVAVVAARATMVAWIT 60

Query: 61  VLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVAFAAVLSFFAVVRSMEI 120
           VLVLLAFAGNRRRVLVKQGRQITADVAMYL AVLVKERGLVAVAFAAVLSF AVVRSMEI
Sbjct: 61  VLVLLAFAGNRRRVLVKQGRQITADVAMYLSAVLVKERGLVAVAFAAVLSFVAVVRSMEI 120

Query: 121 DSLSVSV 128
           DSLSVSV
Sbjct: 121 DSLSVSV 127

BLAST of Carg20199 vs. NCBI nr
Match: KGN63532.1 (hypothetical protein Csa_1G003500 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 1.4e-32
Identity = 92/125 (73.60%), Postives = 104/125 (83.20%), Query Frame = 0

Query: 1   MSTPVTEAVLLSGIFLLLSGSCIVVLNFD-LMGRWVPIVGLLVVAGVAVVAARATMVAWI 60
           M TP T A   S IF+LLSG C +V N D LMGRW+PI+GLL VA VA++AARATMVAWI
Sbjct: 1   MLTPTT-ATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVALMAARATMVAWI 60

Query: 61  TVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVAFAAVLSFFAVVRSME 120
           TVLVLLAFAGNRRRVLVK GR+ITADVAMYL +V+VKERGL+AVAFAA+ SF AV+RS E
Sbjct: 61  TVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTE 120

Query: 121 IDSLS 125
           I  LS
Sbjct: 121 IYLLS 124

BLAST of Carg20199 vs. NCBI nr
Match: KGN63530.1 (hypothetical protein Csa_1G003480 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 2.3e-32
Identity = 88/118 (74.58%), Postives = 100/118 (84.75%), Query Frame = 0

Query: 8   AVLLSGIFLLLSGSCIVVLNFD-LMGRWVPIVGLLVVAGVAVVAARATMVAWITVLVLLA 67
           A   S IF+LLSG C +V N D LMGRW+PI+GLL VA V ++AARATMVAWITVLVLLA
Sbjct: 2   ATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVLLA 61

Query: 68  FAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVAFAAVLSFFAVVRSMEIDSLS 125
           FAGNRRRVLVK GR+ITADVAMYL +V+VKERGL+AVAFAA+ SF AV+RS EID LS
Sbjct: 62  FAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIDLLS 119

BLAST of Carg20199 vs. TAIR10
Match: AT5G50175.1 (unknown protein)

HSP 1 Score: 65.1 bits (157), Expect = 3.6e-11
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 0

Query: 38  VGLLVVAGVAVV----AARATMVAWITVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAV 97
           +G  + A +++V    AARATMVAWITVLVLLAF+G RRRVL ++G+ ITADVAM L  V
Sbjct: 44  IGFFLAAALSLVLLVAAARATMVAWITVLVLLAFSGTRRRVLARRGKTITADVAMSLFRV 103

BLAST of Carg20199 vs. TAIR10
Match: AT4G03600.1 (unknown protein)

HSP 1 Score: 57.4 bits (137), Expect = 7.5e-09
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 0

Query: 39  GLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKER 98
           G + +     VA  A MV WI+V+VLLAF G  RRVLV +GR+IT +V  ++  VL+KE 
Sbjct: 80  GAMSMVAAMTVAVPAVMVIWISVVVLLAFFGKSRRVLVVEGRKITREVVGFVFKVLLKE- 139

Query: 99  GLVAVAFAAVLSFFAVVR 117
           G V  AF AVL++F ++R
Sbjct: 140 GNVVAAFCAVLAYFLLIR 156

BLAST of Carg20199 vs. TAIR10
Match: AT1G03730.1 (unknown protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 37  IVGLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVK 96
           + G + +   A VA  A MV WI+V+VLLAF G  RRVLV + R+IT +V  ++  VL+K
Sbjct: 83  VFGAMSMVAAAAVAVPAVMVIWISVVVLLAFFGKSRRVLVVEARKITREVFGFVFKVLLK 142

Query: 97  ERGLVAVAFAAVLSFFAVVRSMEIDSL 124
           E   VA A  AVL +F ++R  + DS+
Sbjct: 143 EGNAVA-AVCAVLGYFILIRK-DFDSI 167

BLAST of Carg20199 vs. TAIR10
Match: AT4G28330.1 (unknown protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-05
Identity = 31/86 (36.05%), Postives = 53/86 (61.63%), Query Frame = 0

Query: 37  IVGLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVK 96
           + G+L +A    +A  A +V WI+V+V +AFAG  R+ +V +GR++T ++A ++  VL+K
Sbjct: 74  VFGVLSMAAALFIAVPAIVVIWISVVVTMAFAGKSRKRVVIEGRKVTKEIAGFVFRVLLK 133

Query: 97  ERGLVAVAFAAVLSFFAVVRSMEIDS 123
           E   VA+   A+L++F    S    S
Sbjct: 134 EGNFVAL-LCALLAYFVFFNSYSSSS 158

BLAST of Carg20199 vs. TAIR10
Match: AT4G28340.1 (unknown protein)

HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04
Identity = 29/81 (35.80%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 37  IVGLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVK 96
           + G+L +A    +A  A +V WI+V+V +AF    R+ +V +GR++T ++A Y+  VL+K
Sbjct: 74  VFGVLSMAAALFIAVPAIVVIWISVVVTIAFPVKSRKKVVIEGRKVTKEIAGYVFKVLLK 133

Query: 97  ERGLVAVAFAAVLSFFAVVRS 118
           E   VA+   AV+++F    S
Sbjct: 134 EGNFVAL-LCAVIAYFVFFNS 153

BLAST of Carg20199 vs. TrEMBL
Match: tr|A0A0A0LRZ2|A0A0A0LRZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G003500 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 9.0e-33
Identity = 92/125 (73.60%), Postives = 104/125 (83.20%), Query Frame = 0

Query: 1   MSTPVTEAVLLSGIFLLLSGSCIVVLNFD-LMGRWVPIVGLLVVAGVAVVAARATMVAWI 60
           M TP T A   S IF+LLSG C +V N D LMGRW+PI+GLL VA VA++AARATMVAWI
Sbjct: 1   MLTPTT-ATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVALMAARATMVAWI 60

Query: 61  TVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVAFAAVLSFFAVVRSME 120
           TVLVLLAFAGNRRRVLVK GR+ITADVAMYL +V+VKERGL+AVAFAA+ SF AV+RS E
Sbjct: 61  TVLVLLAFAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTE 120

Query: 121 IDSLS 125
           I  LS
Sbjct: 121 IYLLS 124

BLAST of Carg20199 vs. TrEMBL
Match: tr|A0A0A0LNT4|A0A0A0LNT4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G003480 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.5e-32
Identity = 88/118 (74.58%), Postives = 100/118 (84.75%), Query Frame = 0

Query: 8   AVLLSGIFLLLSGSCIVVLNFD-LMGRWVPIVGLLVVAGVAVVAARATMVAWITVLVLLA 67
           A   S IF+LLSG C +V N D LMGRW+PI+GLL VA V ++AARATMVAWITVLVLLA
Sbjct: 2   ATATSAIFVLLSGLCFLVFNSDNLMGRWLPILGLLAVAVVVLMAARATMVAWITVLVLLA 61

Query: 68  FAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVAFAAVLSFFAVVRSMEIDSLS 125
           FAGNRRRVLVK GR+ITADVAMYL +V+VKERGL+AVAFAA+ SF AV+RS EID LS
Sbjct: 62  FAGNRRRVLVKDGRKITADVAMYLASVIVKERGLLAVAFAALFSFLAVLRSTEIDLLS 119

BLAST of Carg20199 vs. TrEMBL
Match: tr|A0A2N9H933|A0A2N9H933_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36524 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.0e-17
Identity = 63/126 (50.00%), Postives = 88/126 (69.84%), Query Frame = 0

Query: 4   PVTEAVLLSGIFLLLSGSCIVVLNFD-------LMGRW-VPIVGLLVVAGVAVVAARATM 63
           P T+    + + L L  S  V+L+++       ++  W +P VG++++  + +VAARATM
Sbjct: 5   PRTKTTTATVLLLSLFASLYVLLSYNDQITGCSILYMWMLPYVGVVLMVTLVIVAARATM 64

Query: 64  VAWITVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVLVKERGLVAVAFAAVLSFFAVV 122
           V WIT+LVLLAFAGNRR VL K GR+ITADVAM+L  V++KERGLVAVA A ++S  A+V
Sbjct: 65  VTWITLLVLLAFAGNRRPVLAKHGRKITADVAMHLVRVVLKERGLVAVACATIVSLMAMV 124

BLAST of Carg20199 vs. TrEMBL
Match: tr|A0A2I4HAV9|A0A2I4HAV9_9ROSI (uncharacterized protein LOC109015267 OS=Juglans regia OX=51240 GN=LOC109015267 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 53/87 (60.92%), Postives = 69/87 (79.31%), Query Frame = 0

Query: 35  VPIVGLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVL 94
           +P VGL+++  + +VAARATMV WITVLVLL+FAG RRRVL + GR+ITADVAM+L  +L
Sbjct: 49  LPSVGLVLMVTLVIVAARATMVTWITVLVLLSFAGKRRRVLAQHGRKITADVAMHLFRIL 108

Query: 95  VKERGLVAVAFAAVLSFFAVVRSMEID 122
           +KERGLVAV  A ++S  A+VR  E +
Sbjct: 109 LKERGLVAVVCATIVSLMAMVRLREAE 135

BLAST of Carg20199 vs. TrEMBL
Match: tr|A0A2P4H3D9|A0A2P4H3D9_QUESU (Protein nbr1 like OS=Quercus suber OX=58331 GN=CFP56_16298 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.2e-14
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 0

Query: 35  VPIVGLLVVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQGRQITADVAMYLGAVL 94
           +P V + ++  + +VAARATMV WITVLVLLAFAGNRRRVLV+ GR+ITADVAM+L  V+
Sbjct: 30  LPYVVVALMVTLVIVAARATMVTWITVLVLLAFAGNRRRVLVQHGRKITADVAMHLVKVV 89

Query: 95  VKERGLVAVAFAAVLSF 112
           +KERGLVAVA A +  F
Sbjct: 90  LKERGLVAVACATIFCF 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023530771.15.3e-5399.21uncharacterized protein LOC111793221 [Cucurbita pepo subsp. pepo][more]
XP_022933693.17.7e-5297.64uncharacterized protein LOC111441029 [Cucurbita moschata][more]
XP_023004957.17.7e-5297.64uncharacterized protein LOC111498104 [Cucurbita maxima][more]
KGN63532.11.4e-3273.60hypothetical protein Csa_1G003500 [Cucumis sativus][more]
KGN63530.12.3e-3274.58hypothetical protein Csa_1G003480 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT5G50175.13.6e-1160.94unknown protein[more]
AT4G03600.17.5e-0948.72unknown protein[more]
AT1G03730.11.1e-0744.83unknown protein[more]
AT4G28330.11.7e-0536.05unknown protein[more]
AT4G28340.11.9e-0435.80unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LRZ2|A0A0A0LRZ2_CUCSA9.0e-3373.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G003500 PE=4 SV=1[more]
tr|A0A0A0LNT4|A0A0A0LNT4_CUCSA1.5e-3274.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G003480 PE=4 SV=1[more]
tr|A0A2N9H933|A0A2N9H933_FAGSY7.0e-1750.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36524 PE=4 SV=1[more]
tr|A0A2I4HAV9|A0A2I4HAV9_9ROSI1.3e-1560.92uncharacterized protein LOC109015267 OS=Juglans regia OX=51240 GN=LOC109015267 P... [more]
tr|A0A2P4H3D9|A0A2P4H3D9_QUESU4.2e-1466.23Protein nbr1 like OS=Quercus suber OX=58331 GN=CFP56_16298 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20199-RACarg20199-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34656:SF2SUBFAMILY NOT NAMEDcoord: 29..115
NoneNo IPR availablePANTHERPTHR34656FAMILY NOT NAMEDcoord: 29..115