Csa1G000760 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G000760
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Probable DNA-directed RNA polymerase I subunit RPA43
Location	Chr1 : 145779 .. 146820 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTGTGGAAACTCCAAGCTTAATCCAGGAGGAGAGTTGGTTCCTCCAAGGATTCGCCCACTTCATGTACGAAATAAACTTTTGGAGTTGAGGAAACGTAAGAATGGAACCCATCTTAGAGATGGAGCATTGTCAAAAAAAGTGCTTCTGAAAGATGGAGAATCAGAAGAAGAGAACGCTATGCATGTCGATAACAGACATGAGTGTGGCAGCACAAAATGTTTGGCCTCACAACAACACACCAACAATAATAATGCAACCAAAGATGAGCATAATTCAGCTTCAACCATTCCTCCATCCAACAACAATGCTAGTGCAACAAAAACTGGTGAACAAAGCAACCACATCTTGGAGGAGGAGCCTCAACCACACATACAATTGAAAGCTACCCACCCTGATGACACTCCTGTTCTTGAACTTAAACAAGATAAAACCATGAATGAACATAAATGTATCCAAGAAGGAGATGAAAACAACAAGAAAGAAGGAGAAGATGGGAGGCCTGACAACGAAGAGAATCGAGGAAGCTTCATTTGTCCTGGATCTCCCAGTTTCAGACTTTATTTTGTTGAAGAAACACAAGACGACAAAGAAAAAGGTAAAAATGCAATAACAAAACAAAACTTTCAAGTTAAATTTCGAAATCTTCCTATATTATGACCAACACAGTAACATAGTACATTTTGTGCAGTTGAAATGAAAGATGCAAGTGGTATGGGAGATGTCTCACACAAGAAGTCGCCAAGTCGTGACAGCGTTGAGAGCACCACTAGTGCAAAATGTGACGAGGTCAGTCACCACATCCCCAACTTTAGAAGATTAGGTGTTATGGATATTTGATTTGATTTCACTTGAACAGGGCCAGGAGAACAAGGCAATAAAGAAAGGGAAAAAGGAAACGACTTTCAATAGAGTCGTCAGTAAAAAAAGACCAGTTAGCGTTGGTGTCAAGAATTTGTTGAATGTTAAATCTTGCTATCATTTGAGTTGTTCCGGCAATGACAGAGCCAATCTTCTAGCTAGAAAAGCCGAAGCTTAA

mRNA sequence

ATGGGGTGTGGAAACTCCAAGCTTAATCCAGGAGGAGAGTTGGTTCCTCCAAGGATTCGCCCACTTCATGTACGAAATAAACTTTTGGAGTTGAGGAAACGTAAGAATGGAACCCATCTTAGAGATGGAGCATTGTCAAAAAAAGTGCTTCTGAAAGATGGAGAATCAGAAGAAGAGAACGCTATGCATGTCGATAACAGACATGAGTGTGGCAGCACAAAATGTTTGGCCTCACAACAACACACCAACAATAATAATGCAACCAAAGATGAGCATAATTCAGCTTCAACCATTCCTCCATCCAACAACAATGCTAGTGCAACAAAAACTGGTGAACAAAGCAACCACATCTTGGAGGAGGAGCCTCAACCACACATACAATTGAAAGCTACCCACCCTGATGACACTCCTGTTCTTGAACTTAAACAAGATAAAACCATGAATGAACATAAATGTATCCAAGAAGGAGATGAAAACAACAAGAAAGAAGGAGAAGATGGGAGGCCTGACAACGAAGAGAATCGAGGAAGCTTCATTTGTCCTGGATCTCCCAGTTTCAGACTTTATTTTGTTGAAGAAACACAAGACGACAAAGAAAAAGTTGAAATGAAAGATGCAAGTGGTATGGGAGATGTCTCACACAAGAAGTCGCCAAGTCGTGACAGCGTTGAGAGCACCACTAGTGCAAAATGTGACGAGGGCCAGGAGAACAAGGCAATAAAGAAAGGGAAAAAGGAAACGACTTTCAATAGAGTCGTCAGTAAAAAAAGACCAGTTAGCGTTGGTGTCAAGAATTTGTTGAATGTTAAATCTTGCTATCATTTGAGTTGTTCCGGCAATGACAGAGCCAATCTTCTAGCTAGAAAAGCCGAAGCTTAA

Coding sequence (CDS)

ATGGGGTGTGGAAACTCCAAGCTTAATCCAGGAGGAGAGTTGGTTCCTCCAAGGATTCGCCCACTTCATGTACGAAATAAACTTTTGGAGTTGAGGAAACGTAAGAATGGAACCCATCTTAGAGATGGAGCATTGTCAAAAAAAGTGCTTCTGAAAGATGGAGAATCAGAAGAAGAGAACGCTATGCATGTCGATAACAGACATGAGTGTGGCAGCACAAAATGTTTGGCCTCACAACAACACACCAACAATAATAATGCAACCAAAGATGAGCATAATTCAGCTTCAACCATTCCTCCATCCAACAACAATGCTAGTGCAACAAAAACTGGTGAACAAAGCAACCACATCTTGGAGGAGGAGCCTCAACCACACATACAATTGAAAGCTACCCACCCTGATGACACTCCTGTTCTTGAACTTAAACAAGATAAAACCATGAATGAACATAAATGTATCCAAGAAGGAGATGAAAACAACAAGAAAGAAGGAGAAGATGGGAGGCCTGACAACGAAGAGAATCGAGGAAGCTTCATTTGTCCTGGATCTCCCAGTTTCAGACTTTATTTTGTTGAAGAAACACAAGACGACAAAGAAAAAGTTGAAATGAAAGATGCAAGTGGTATGGGAGATGTCTCACACAAGAAGTCGCCAAGTCGTGACAGCGTTGAGAGCACCACTAGTGCAAAATGTGACGAGGGCCAGGAGAACAAGGCAATAAAGAAAGGGAAAAAGGAAACGACTTTCAATAGAGTCGTCAGTAAAAAAAGACCAGTTAGCGTTGGTGTCAAGAATTTGTTGAATGTTAAATCTTGCTATCATTTGAGTTGTTCCGGCAATGACAGAGCCAATCTTCTAGCTAGAAAAGCCGAAGCTTAA

Protein sequence

MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLRDGALSKKVLLKDGESEEENAMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILEEEPQPHIQLKATHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSFICPGSPSFRLYFVEETQDDKEKVEMKDASGMGDVSHKKSPSRDSVESTTSAKCDEGQENKAIKKGKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA*

Homology

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BLAST of Csa1G000760 vs. Swiss-Prot
Match: RPA43_DICDI (Probable DNA-directed RNA polymerase I subunit RPA43 OS=Dictyostelium discoideum GN=rpa43 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.8e-06
Identity = 44/160 (27.50%), Postives = 74/160 (46.25%), Query Frame = 1


Query: 83  NNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILEEEPQPHIQLKATHPDDTPVLELK 142
           NNNN   +  N+ +T+  + NN + TK  + S    EEEP+P I +K      +  +E K
Sbjct: 215 NNNNNNNNNGNNNTTLINTENNNNITKFDDDSEKESEEEPKP-IIIKEEPKIVSVKVESK 274

Query: 143 QDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSFICPGSPSFRLYFVEETQDDKEKVE 202
           +     E +   + D++ KKE E  +   + +  S              +E+++DK+K  
Sbjct: 275 KVVVKEEEQKSSKKDKDIKKEKESKKRKKDSSDES--------------DESEEDKKKKS 334

Query: 203 MKDASGMGDVSHKKSPSRDSVESTTSAKCDEGQENKAIKK 243
            K      + S KKS  +  VES++ +  DE ++ K  KK
Sbjct: 335 TKKEK---ESSSKKSSKKVKVESSSESSEDEKEKKKKKKK 356

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BLAST of Csa1G000760 vs. TrEMBL
Match: A0A0A0LNT2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000760 PE=4 SV=1)

HSP 1 Score: 600.1 bits (1546), Expect = 1.4e-168
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1


Query: 1   MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLRDGALSKKVLLKDGESEEEN 60
           MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLRDGALSKKVLLKDGESEEEN
Sbjct: 1   MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLRDGALSKKVLLKDGESEEEN 60

Query: 61  AMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILEE 120
           AMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILEE
Sbjct: 61  AMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILEE 120

Query: 121 EPQPHIQLKATHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSFIC 180
           EPQPHIQLKATHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSFIC
Sbjct: 121 EPQPHIQLKATHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSFIC 180

Query: 181 PGSPSFRLYFVEETQDDKEKVEMKDASGMGDVSHKKSPSRDSVESTTSAKCDEGQENKAI 240
           PGSPSFRLYFVEETQDDKEKVEMKDASGMGDVSHKKSPSRDSVESTTSAKCDEGQENKAI
Sbjct: 181 PGSPSFRLYFVEETQDDKEKVEMKDASGMGDVSHKKSPSRDSVESTTSAKCDEGQENKAI 240

Query: 241 KKGKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 293
           KKGKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA
Sbjct: 241 KKGKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 292

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BLAST of Csa1G000760 vs. TrEMBL
Match: W9R5I1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008832 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.5e-29
Identity = 107/302 (35.43%), Postives = 158/302 (52.32%), Query Frame = 1


Query: 1   MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLRDGALSKKVLLKDGESEEEN 60
           MGC NSKLN     +PP++RPL  R K+ ELR+R++      G LSKK LL DG  EE +
Sbjct: 1   MGCQNSKLNRDILAIPPKLRPLLWR-KVEELRRRRSAATANGGTLSKKELLTDGVREESD 60

Query: 61  AMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILEE 120
           A   D  HE         + +  N+  +   H S S+      +AS  KT      I EE
Sbjct: 61  AFSRD--HES------LHENYERNDTTSSPGHESVSS------SASQPKT-----IITEE 120

Query: 121 EPQPHIQLKATHPDDTPV-LELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSFI 180
           + +   + +   P+ T + +E +  +   +    ++ +E  K+E ED   ++E ++ + I
Sbjct: 121 DKKKTSEEEIVEPEKTEINMESENQERSGKDDKEEKEEEEAKEEKEDDLTEDEGDQEAKI 180

Query: 181 CPGSPSFRLYFV--------EETQDDKEKVEMKDASGMGDVSHKKSPSRD-SVESTTSAK 240
           CP SPSFR+YF+        E+  DD+   E KD S   +   +K  +R+ SVES     
Sbjct: 181 CPSSPSFRVYFIESLDQEEEEKKDDDEPDHEDKDDSKENENDMQKEWNRENSVESVVLID 240

Query: 241 CDEGQENKAIKK--GKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCSGNDRANLLAR 291
             E QE K +KK  GK    F R + +  PV+  VK+LLNV+SCYH S   +DRA+LLA+
Sbjct: 241 THEDQETKIVKKKSGKSRMRFRRALCRGGPVA--VKHLLNVRSCYHPS---SDRASLLAK 277

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BLAST of Csa1G000760 vs. TrEMBL
Match: G7J3B7_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_3g098800 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 96/311 (30.87%), Postives = 151/311 (48.55%), Query Frame = 1


Query: 1   MGCGNSK-LNPGGE-LVPPRIRPLHVRNKLLELRKRKNGTHLRDGALSKKVLLKDGESEE 60
           MG  NS+ +NP GE ++P R+RPL +R ++ E RKR+N    RDGA+SKK LLKD     
Sbjct: 1   MGGNNSRSVNPNGEDVLPARLRPL-LRQRIEEFRKRRNAR--RDGAVSKKELLKDDAGNN 60

Query: 61  ENAMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHIL 120
           ++     N +E         ++ T  +  + ++ +  + +P S       +     +H L
Sbjct: 61  DDPS--SNVNEVLEETQQHEEEKTTVHAVSVEKLSQVAPLPVSECGIEEEEHKGSKDHDL 120

Query: 121 EEEPQPHIQLKATHPDDTPVLELKQDKTMNEHKCIQEG---DENNKKEGEDGRPDNEENR 180
           E+  +           +  V E+K   ++ E+K  +     D+ +KKE E+   ++E   
Sbjct: 121 EKCKEI----------ERNVAEVKIAASLQENKYEESNEKHDDEDKKEEEEDEEEDENEI 180

Query: 181 GSFICPGSPSFRLYFVEETQ-----------DDKEKVEMKDASGMGDVSHKKSPSRDSVE 240
           G  I PGSPSFR+Y++E T+           +DK++ E +D      V H KS S +S E
Sbjct: 181 GRLIGPGSPSFRIYYIEATERKEQALRDTRVNDKQQGEKEDEP---IVVHYKSHSCESDE 240

Query: 241 STT--SAKCDEGQENKAIKKGKKETTFNRVVSKKRPVSVGVKNLLNVKSCYH------LS 288
           S T  S   D   E   I+   K+   +    K+R +    KNLLNVK+         ++
Sbjct: 241 SVTSESENTDNSNEVVEIETAPKKKGHH----KRRKLVAMKKNLLNVKNLQKNSMNKMMA 289

[Close]

BLAST of Csa1G000760 vs. TrEMBL
Match: M5W8K2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025874mg PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.9e-19
Identity = 99/315 (31.43%), Postives = 145/315 (46.03%), Query Frame = 1


Query: 1   MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLR-DGALSKKVLLKDGESEEE 60
           MG  NSKL P GE VPPRIR L ++ K  E+R R     L+     SKK LLKDGE EE 
Sbjct: 1   MGGQNSKLTPEGEAVPPRIRSL-LQRKFEEIRGRTKAKKLKASHTFSKKQLLKDGEQEE- 60

Query: 61  NAMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILE 120
             + +   H   S+                          P   N  + KT  Q+  +L 
Sbjct: 61  --VDISVPHSLQSS--------------------------PEFENLPSPKT-PQTLELLP 120

Query: 121 EEPQPHIQLKATHPD-------DTPVLELKQDKTMNEH-------KCIQEGDENNKKEGE 180
             P+   + K +  D       +  V + K+ K +N +           EG+E  + E  
Sbjct: 121 RLPELDRRAKQSDEDQIRRDGAEFSVEDDKEAKGVNVYIGGVFAMGETTEGEEEEEDEVN 180

Query: 181 DGRPDNEENRGSFICPGSPSFRLYFVE--ETQDDKEKVEMKDASGMGDVSHKKSPSRDSV 240
           D     + N    +CP SPSFR+Y +E  E ++D  K ++ D     D  HKKSPS +S 
Sbjct: 181 DA--GMQRNSKIHLCPASPSFRVYCMEPLEIENDDSKDDITDE----DFKHKKSPSAESA 240

Query: 241 ESTTSA-----KCDEGQENKAIKKGKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCS 293
           +S+  +     + ++ Q+ K  +KG++     R+ +  RP +  VKNLLNVK CY+  C+
Sbjct: 241 DSSVDSVRSMIETNDVQDTKTKQKGRRR---RRIKNALRPNT--VKNLLNVKGCYYAGCT 273

[Close]

BLAST of Csa1G000760 vs. TrEMBL
Match: A0A0R0K3F1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G202200 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.9e-19
Identity = 87/306 (28.43%), Postives = 143/306 (46.73%), Query Frame = 1


Query: 1   MGCGNSKLNPG-GELVPPRIRPLHVRNKLLELRKRKNGTHLRDGALSKKVLLKDGESEEE 60
           MG GNSK N   GE +PP+IRP+ V ++  E RKR+NG    +  LSKK LL + +   +
Sbjct: 1   MGIGNSKSNAAEGERLPPKIRPMLV-SRFEEFRKRRNG----ETTLSKKNLLNEEDDNSQ 60

Query: 61  NAMHVDNRHECGSTKCLASQQHTNNNNATKDE-------------HNSASTIPPSNNNAS 120
           ++   +  ++  S+K +   +          E              N   T P  +N   
Sbjct: 61  SSHRTEEENKVSSSKEIEPPKEETVERVITAEKLSRVVPVPNSECENVEETHPNKDNIEQ 120

Query: 121 ATKTGEQSNHILEEEPQPHIQLKATHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGED 180
             K  + S  +     +       T  + T  L +++ K   + K   +GD++++  G++
Sbjct: 121 VIKYMDPSQDVFNRAVEMAEAEVKTEEEKTAEL-VEETKEEKKQKVDAKGDDHHEDSGDE 180

Query: 181 GRPDNEENRGSFICPGSPSFRLYFVEETQDDKEKVEMKDASGMGDVSHKKSPSRDSVEST 240
              D  E  G F+CPGSPSFR+Y +E      EK   ++ +G   +  +KS S DSVE+ 
Sbjct: 181 ---DESEKVGRFLCPGSPSFRIYCIE-----AEKRNEEECNG-PTIVLQKSRSVDSVETA 240

Query: 241 TSAKCDEGQENKAIKKGKKETTFNRVVSKKRPVSVGVKNLLNVKSCYH--LSCSGNDRAN 291
            S   +E  E+ + +KG K+                +K LL VKS YH   +C+G+D+++
Sbjct: 241 ESTNSNEELESTSKRKGHKKK------------FGAMKTLLKVKSLYHPMCTCTGDDKSH 279

[Close]

BLAST of Csa1G000760 vs. TAIR10
Match: AT5G50830.2 (AT5G50830.2 unknown protein)

HSP 1 Score: 80.1 bits (196), Expect = 2.5e-15
Identity = 90/316 (28.48%), Postives = 143/316 (45.25%), Query Frame = 1


Query: 1   MGCGNSKLN--------PGGEL-VPPRIRPLHVRNKLLELRKRKNGTHLRDG-ALSKKVL 60
           MGCG S+L          GG + +P  IRPL +R +L E++KR +   L+    LSKK L
Sbjct: 1   MGCGGSRLGGVATTRAEEGGVVPLPAGIRPL-LRRRLEEMKKRSHAGVLKGSQTLSKKEL 60

Query: 61  LKDGESEEENAMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNN-----NA 120
           L+   SE+      D     GS K  A      ++N  + +      IP  ++       
Sbjct: 61  LRHNSSEDGE----DTEENDGSLKASAKVAPAPDHNVEEKKEVIYEKIPSKDDVKEVKEE 120

Query: 121 SATKTGEQSNH---ILEEEPQPHIQL-----KATHPDDTPVLELKQDKTMNEHKCIQEGD 180
                 E+ NH   ++E++ + + ++     +  H DD  V+ +K+           EGD
Sbjct: 121 VVVNKQEEDNHHQDVVEKQEEENKEVVKKQEEENHDDDVVVINVKK-----------EGD 180

Query: 181 ENNKKEGEDGRPDNEENRGSFICPGSPSFRLYFVE-ETQDDKEKVEMKDASGMGDVSHKK 240
           +    + ++G  +N + R   I PGSPSFR+Y V+  + DD E+ +++DA        +K
Sbjct: 181 DGKNHDVDEGSINNFDER--MIGPGSPSFRVYCVDVPSDDDDEEKDVEDA--------RK 240

Query: 241 SPSRDSVESTTSAKCDEGQENKAIKKGKKETTFNRVVSKKRPVSVGVKNLLNVKS-CY-H 291
           S   +SV  TT  K  +G     +KK KKE        K+  +++  K L NV + CY  
Sbjct: 241 SMETESV--TTEIKEVDG---SIVKKEKKERR-----GKRFGIALPRKYLANVTAPCYAG 280

[Close]

BLAST of Csa1G000760 vs. NCBI nr
Match: gi|778655250|ref|XP_011649820.1| (PREDICTED: probable DNA-directed RNA polymerase I subunit RPA43 [Cucumis sativus])

HSP 1 Score: 600.1 bits (1546), Expect = 2.0e-168
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1


Query: 1   MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLRDGALSKKVLLKDGESEEEN 60
           MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLRDGALSKKVLLKDGESEEEN
Sbjct: 1   MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLRDGALSKKVLLKDGESEEEN 60

Query: 61  AMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILEE 120
           AMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILEE
Sbjct: 61  AMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILEE 120

Query: 121 EPQPHIQLKATHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSFIC 180
           EPQPHIQLKATHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSFIC
Sbjct: 121 EPQPHIQLKATHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSFIC 180

Query: 181 PGSPSFRLYFVEETQDDKEKVEMKDASGMGDVSHKKSPSRDSVESTTSAKCDEGQENKAI 240
           PGSPSFRLYFVEETQDDKEKVEMKDASGMGDVSHKKSPSRDSVESTTSAKCDEGQENKAI
Sbjct: 181 PGSPSFRLYFVEETQDDKEKVEMKDASGMGDVSHKKSPSRDSVESTTSAKCDEGQENKAI 240

Query: 241 KKGKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 293
           KKGKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA
Sbjct: 241 KKGKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 292

[Close]

BLAST of Csa1G000760 vs. NCBI nr
Match: gi|659128822|ref|XP_008464387.1| (PREDICTED: probable DNA-directed RNA polymerase I subunit RPA43 [Cucumis melo])

HSP 1 Score: 545.0 bits (1403), Expect = 7.8e-152
Identity = 269/292 (92.12%), Postives = 275/292 (94.18%), Query Frame = 1


Query: 1   MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLRDGALSKKVLLKDGESEEEN 60
           MGCGNSKLNP GELVPPRIRPL VRNK LELRKRKNGTHLRDGALSKKVLLK+GESEEEN
Sbjct: 7   MGCGNSKLNPEGELVPPRIRPLLVRNKFLELRKRKNGTHLRDGALSKKVLLKEGESEEEN 66

Query: 61  AMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILEE 120
           AM VDNRHECGSTKCLASQQHT NN ATKDEHNSASTIPPSNN+A+ATK GEQSN ILEE
Sbjct: 67  AMFVDNRHECGSTKCLASQQHTINN-ATKDEHNSASTIPPSNNDANATKNGEQSNRILEE 126

Query: 121 EPQPHIQLKATHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSFIC 180
           EP+PHIQLK THPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGS IC
Sbjct: 127 EPRPHIQLKTTHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSIIC 186

Query: 181 PGSPSFRLYFVEETQDDKEKVEMKDASGMGDVSHKKSPSRDSVESTTSAKCDEGQENKAI 240
           PGSPSFR YFVEETQDDKEKVEMKDA GMGDVSHKKSPS DSVESTTSAK  EGQENK I
Sbjct: 187 PGSPSFRFYFVEETQDDKEKVEMKDAGGMGDVSHKKSPSHDSVESTTSAKSGEGQENKVI 246

Query: 241 KKGKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 293
           KKGKK TTFNRV+SK+RPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA
Sbjct: 247 KKGKKGTTFNRVISKRRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 297

[Close]

BLAST of Csa1G000760 vs. NCBI nr
Match: gi|703089924|ref|XP_010093939.1| (hypothetical protein L484_008832 [Morus notabilis])

HSP 1 Score: 138.3 bits (347), Expect = 2.2e-29
Identity = 107/302 (35.43%), Postives = 158/302 (52.32%), Query Frame = 1


Query: 1   MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLRDGALSKKVLLKDGESEEEN 60
           MGC NSKLN     +PP++RPL  R K+ ELR+R++      G LSKK LL DG  EE +
Sbjct: 1   MGCQNSKLNRDILAIPPKLRPLLWR-KVEELRRRRSAATANGGTLSKKELLTDGVREESD 60

Query: 61  AMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILEE 120
           A   D  HE         + +  N+  +   H S S+      +AS  KT      I EE
Sbjct: 61  AFSRD--HES------LHENYERNDTTSSPGHESVSS------SASQPKT-----IITEE 120

Query: 121 EPQPHIQLKATHPDDTPV-LELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSFI 180
           + +   + +   P+ T + +E +  +   +    ++ +E  K+E ED   ++E ++ + I
Sbjct: 121 DKKKTSEEEIVEPEKTEINMESENQERSGKDDKEEKEEEEAKEEKEDDLTEDEGDQEAKI 180

Query: 181 CPGSPSFRLYFV--------EETQDDKEKVEMKDASGMGDVSHKKSPSRD-SVESTTSAK 240
           CP SPSFR+YF+        E+  DD+   E KD S   +   +K  +R+ SVES     
Sbjct: 181 CPSSPSFRVYFIESLDQEEEEKKDDDEPDHEDKDDSKENENDMQKEWNRENSVESVVLID 240

Query: 241 CDEGQENKAIKK--GKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCSGNDRANLLAR 291
             E QE K +KK  GK    F R + +  PV+  VK+LLNV+SCYH S   +DRA+LLA+
Sbjct: 241 THEDQETKIVKKKSGKSRMRFRRALCRGGPVA--VKHLLNVRSCYHPS---SDRASLLAK 277

[Close]

BLAST of Csa1G000760 vs. NCBI nr
Match: gi|657965116|ref|XP_008374202.1| (PREDICTED: uncharacterized protein LOC103437503 [Malus domestica])

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22
Identity = 99/304 (32.57%), Postives = 140/304 (46.05%), Query Frame = 1


Query: 1   MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLRDGA-LSKKVLLKDGESEEE 60
           MG  NSKL P  E VPPRI  L ++ +  E++ R     L+  + LSKK LLKD   EE 
Sbjct: 1   MGDQNSKLTPEAEAVPPRILSL-LQRRFEEMKSRSKARKLKAASTLSKKQLLKDCAQEE- 60

Query: 61  NAMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILE 120
               VDN     S +C                 N +   P S      TK        ++
Sbjct: 61  ----VDNSL-LHSPQCSPESDKITFPKIPPTLENKSKVAPISQECDKGTKQ-------VD 120

Query: 121 EEPQPHIQLKATHPDDTPVLELKQDKTMNEH---KCIQEGDENNKKEGEDGRPDNEENRG 180
           +E Q   Q K    + + V + K+ K +N +       E     ++E ED     + NR 
Sbjct: 121 DEDQKKEQSKRDGTECS-VEDHKEPKGVNVYIGGVFAMEDTTEGEEEDEDNEDGTQRNRE 180

Query: 181 SFICPGSPSFRLYFVE--ETQDDKEKVEMKDASGMGDVSHKKSPSRDSVESTTSAKCD-- 240
            F+CP SPSF++Y +E  E ++D  K    D++   D+ HKKSPS  SV+ +  +     
Sbjct: 181 FFMCPASPSFKIYCMEALEIENDSSKY---DSTTDEDIKHKKSPSAASVDCSVDSLASTT 240

Query: 241 ---EGQENKAIKKGKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCS-GNDRANLLAR 293
              +GQ  K  KKG++                GVKNLL++K CY+L CS G+DRA  LA 
Sbjct: 241 DHHDGQVTKTKKKGRRRRRVRN--------GFGVKNLLHIKGCYYLGCSGGHDRATYLAE 278

[Close]

BLAST of Csa1G000760 vs. NCBI nr
Match: gi|694419165|ref|XP_009337549.1| (PREDICTED: uncharacterized protein LOC103929997 [Pyrus x bretschneideri])

HSP 1 Score: 114.8 bits (286), Expect = 2.6e-22
Identity = 98/306 (32.03%), Postives = 136/306 (44.44%), Query Frame = 1


Query: 1   MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLRDGA-LSKKVLLKDGESEEE 60
           MG  NSKL P  E VPPRIR L ++ +  E++ R     L+  + LSKK LLKDG+ EE 
Sbjct: 1   MGGQNSKLTPEAEAVPPRIRSL-LQRRFEEMKSRSKARKLKAASTLSKKQLLKDGDQEEV 60

Query: 61  NAMHVDNRHECGSTKCLASQQHTNNNNATKDE-----HNSASTIPPSNNNASATKTGEQS 120
           +           S+   + Q    ++  T+ +      N +   P S      TK  +  
Sbjct: 61  D-----------SSLPHSLQSSPESDKITRPKIPPTLENKSKVAPISPERDKGTKQADDE 120

Query: 121 NHILEEEPQPHIQLKATHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEEN 180
           N   E+     I+   T        E K  K         E     ++E ED       N
Sbjct: 121 NQNKEQ-----IKRDGTECSVEDHKEPKGVKVYVGGVFAMEDTTEGEEEDEDNEGGIRRN 180

Query: 181 RGSFICPGSPSFRLYFVE--ETQDDKEKVEMKDASGMGDVSHKKSPSRDSVESTTSAKCD 240
              F+CP SPSFR+Y +E  E ++D  K    D++   D+ HKKSPS  S  S   +   
Sbjct: 181 NEFFMCPASPSFRVYCMEALEIENDGSKY---DSTTDEDIKHKKSPSAASAHSNVDSVAS 240

Query: 241 -----EGQENKAIKKGKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCS-GNDRANLL 293
                +GQ  K  KKG++         ++     GVKNLLN+K CY+  CS G DRA  L
Sbjct: 241 MTDHHDGQVTKTKKKGRRR--------RRVKNGFGVKNLLNIKGCYYPGCSGGQDRATYL 278

The following BLAST results are available for this feature:

BLAST of Csa1G000760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPA43_DICDI	5.8e-06	27.50	Probable DNA-directed RNA polymerase I subunit RPA43 OS=Dictyostelium discoideum...	[more]

BLAST of Csa1G000760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNT2_CUCSA	1.4e-168	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000760 PE=4 SV=1	[more]
W9R5I1_9ROSA	1.5e-29	35.43	Uncharacterized protein OS=Morus notabilis GN=L484_008832 PE=4 SV=1	[more]
G7J3B7_MEDTR	1.1e-19	30.87	Uncharacterized protein OS=Medicago truncatula GN=MTR_3g098800 PE=4 SV=1	[more]
M5W8K2_PRUPE	1.9e-19	31.43	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025874mg PE=4 SV=1	[more]
A0A0R0K3F1_SOYBN	1.9e-19	28.43	Uncharacterized protein OS=Glycine max GN=GLYMA_05G202200 PE=4 SV=1	[more]

BLAST of Csa1G000760 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50830.2	2.5e-15	28.48	unknown protein	[more]

BLAST of Csa1G000760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778655250\|ref\|XP_011649820.1\|	2.0e-168	100.00	PREDICTED: probable DNA-directed RNA polymerase I subunit RPA43 [Cucumis sativus...	[more]
gi\|659128822\|ref\|XP_008464387.1\|	7.8e-152	92.12	PREDICTED: probable DNA-directed RNA polymerase I subunit RPA43 [Cucumis melo]	[more]
gi\|703089924\|ref\|XP_010093939.1\|	2.2e-29	35.43	hypothetical protein L484_008832 [Morus notabilis]	[more]
gi\|657965116\|ref\|XP_008374202.1\|	1.5e-22	32.57	PREDICTED: uncharacterized protein LOC103437503 [Malus domestica]	[more]
gi\|694419165\|ref\|XP_009337549.1\|	2.6e-22	32.03	PREDICTED: uncharacterized protein LOC103929997 [Pyrus x bretschneideri]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU128791	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G000760.1	Csa1G000760.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU128791	CU128791	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G000760	Cla019305	Watermelon (97103) v1	cuwmB094
Csa1G000760	MELO3C026179	Melon (DHL92) v3.5.1	cumeB054
Csa1G000760	ClCG06G018170	Watermelon (Charleston Gray)	cuwcgB081
Csa1G000760	Lsi06G016660	Bottle gourd (USVL1VR-Ls)	culsiB070
Csa1G000760	MELO3C026179.2	Melon (DHL92) v3.6.1	cumedB046
Csa1G000760	Cla97C06G127950	Watermelon (97103) v2	cuwmbB078
Csa1G000760	Bhi02G000489	Wax gourd	cuwgoB079
Csa1G000760	CSPI01G00260	Wild cucumber (PI 183967)	cpicuB000
Csa1G000760	Cucsa.157070	Cucumber (Gy14) v1	cgycuB224
Csa1G000760	CmaCh10G000360	Cucurbita maxima (Rimu)	cmacuB048
Csa1G000760	CmoCh10G000320	Cucurbita moschata (Rifu)	cmocuB037
Csa1G000760	Cp4.1LG18g09060	Cucurbita pepo (Zucchini)	cpecuB361
Csa1G000760	Carg10258	Silver-seed gourd	carcuB0391

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G000760	Wax gourd	cuwgoB061
Csa1G000760	Cucumber (Chinese Long) v2	cucuB002
Csa1G000760	Cucumber (Chinese Long) v2	cucuB014
Csa1G000760	Cucurbita maxima (Rimu)	cmacuB086
Csa1G000760	Cucurbita maxima (Rimu)	cmacuB225
Csa1G000760	Cucurbita moschata (Rifu)	cmocuB076
Csa1G000760	Cucurbita moschata (Rifu)	cmocuB211
Csa1G000760	Cucurbita moschata (Rifu)	cmocuB393
Csa1G000760	Melon (DHL92) v3.5.1	cumeB022
Csa1G000760	Melon (DHL92) v3.5.1	cumeB078
Csa1G000760	Watermelon (Charleston Gray)	cuwcgB052
Csa1G000760	Watermelon (97103) v1	cuwmB028
Csa1G000760	Cucurbita pepo (Zucchini)	cpecuB513
Csa1G000760	Cucurbita pepo (Zucchini)	cpecuB653
Csa1G000760	Bottle gourd (USVL1VR-Ls)	culsiB041
Csa1G000760	Cucumber (Gy14) v2	cgybcuB001
Csa1G000760	Cucumber (Gy14) v2	cgybcuB014
Csa1G000760	Cucumber (Gy14) v2	cgybcuB096
Csa1G000760	Melon (DHL92) v3.6.1	cumedB018
Csa1G000760	Silver-seed gourd	carcuB0636
Csa1G000760	Watermelon (97103) v2	cuwmbB050