Csa1G000550 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G000550
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ethylene-responsive transcription factor; contains IPR016177 (DNA-binding, integrase-type)
Location	Chr1 : 37706 .. 39576 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGTTTTGCAGTAATGGTTCATGCCAATGCTATGGATATGTCCATTCAATGGTTGGTGTTTATTCCACAGGAACAAAAGTTTACTCGAGTGATTATTGGCTTAGATGTGCCAGGAACCCTTTTCTGTTCTGGAGAATATAATAGGTGATACCGTGTCTTCTATTCTTATGTTGGGTAAAAGAATTGAAAGGAATATCGGAGACAAAAATAAAAAAGGTCAATAACTACAAAAATTAAAGTTGTAAAATAAAGTCGATACAAAAATAAAAAATGTCAATAGCTAACGAAGAGGTCATGAGTTTGACATATTGTGGTCATTTATCTACGAATTAATTTTTTTAAATATTTTTAGTAGCAATAAAATTAAATATAAAATTTATTTTTTATTGCAATTTTACTTTCAATTGTGTATAAATATTTAAGTATATGTGATATATTTTATAGGTTAGTTTTCATAAATATAACAAAACAACAAAATTTTACAGTTCAGGTATGTAATAAAATAAAAAAATCCAAAATATTTTCGTAAATTCCAGGTTTGCTCTTGAATATTGCGGACCATATTTCACTTTTTCTCTTTTAGAATTTCTTGCTTCGATTTTTCACTTCTTCAAATCCCTACTTGGTAAACGTTCTTCATCATCTCTTATATATTTCCTCTTCTAGACCTAAACGATCGTGTACTAAGATCTAAACGGTTCAAGATCGTATACCAGTTATGTAATTATGTAATTATGTAATTATGGAAGTTGTTTTTTGTAATTATGTAATTATGGGCTCAAACTCAAGGCTTAATTGTGTAATTATGGAAGTTGTTTTTTGTTTGTTTTGTTATGATTGTTTTCCCCATTTGGATCGTTATTTATATCATTTGATTTTTCAACGGTGGCATATGATTTTATAAAAAAAGATTTTTTTTTAATATAATTTTGATATGGGTATATCTTAATCACATATTAATTCATCTGTGAATTAACAAAATCATCCATTTCATAAATTTTGAGGTTCTAACTATATGTGAATGCTAACACATGAAATCCATCAACGAAATTAGAGGACCACTAGAAAAGCAGTTCTAAAAAAGGAACAAATGTCATGAATGTTAAAAGTATTCAAGTAAGAATAAAATATTTTGTAAAATAAACCAACCAAACACAAGTGTGTAAAAAGTTTTTTGCTTTTATTTTTTTATTTTAAATTTATTGTTTTAACAAATGAGAAAGCCATAACAAAATCTATATATAGAGAGAGAGGATAGGTTGGTAAGGGAAAAGGGGCACCCCGGAGAAGGTATATCAAGGAAAGGGAAAAATTAAAAGTGGATCCGAAGCGAGGGAAGAGAGCACTTTGTTCCGATGAATCGGAGGAAGAAAATCCGTTCCCGATCTACTCAGCTAGATCTGAATATGACACGTCGGCGATGGTATCTGCGTTAACTCAAGTGATAACGAGTGGGAGTGGGAGTGGCAGTGGGAGTAGCAGAAGCCTATCAGTAGTAGAAGAACCTGCAGCATCAGCGCGGGGAGATAATGAAGAAGGAGTGAAAAGGGAAAGCCGACATTATCGAGGAGTAAGGCAGAGACCGTGGGGAAAATGGGCTGCTGAGATTCGTGATCCAAAAAAGGCAGCAAGAGTGTGGTTGGGCACCTTTGACACTGCCGAGGCTGCGGCACTTGCTTACGATGAAGCTGCCCTCAGATTTAAGGGCACAAAAGCCAAGCTTAACTTCCCTGAGAGACTTACCACCCCACCATCATACCCCTATGCCCCCTATCATCATCAGGATGATTACCAAAACCACCGCTTTTAGTTTAATTTAATTACTTATTGTTAATCTTGTTTTTAGTTCACTTACCTAGCTAGCTGCCAC

mRNA sequence

ATGGTTCATGCCAATGCTATGGATATGTCCATTCAATGGTTGGTGTTTATTCCACAGGAACAAAAGTTTACTCGAGTGATTATTGGCTTAGATGTGCCAGGAACCCTTTTCTGTTCTGGAGAATATAATAGGTATATCAAGGAAAGGGAAAAATTAAAAGTGGATCCGAAGCGAGGGAAGAGAGCACTTTGTTCCGATGAATCGGAGGAAGAAAATCCGTTCCCGATCTACTCAGCTAGATCTGAATATGACACGTCGGCGATGGTATCTGCGTTAACTCAAGTGATAACGAGTGGGAGTGGGAGTGGCAGTGGGAGTAGCAGAAGCCTATCAGTAGTAGAAGAACCTGCAGCATCAGCGCGGGGAGATAATGAAGAAGGAGTGAAAAGGGAAAGCCGACATTATCGAGGAGTAAGGCAGAGACCGTGGGGAAAATGGGCTGCTGAGATTCGTGATCCAAAAAAGGCAGCAAGAGTGTGGTTGGGCACCTTTGACACTGCCGAGGCTGCGGCACTTGCTTACGATGAAGCTGCCCTCAGATTTAAGGGCACAAAAGCCAAGCTTAACTTCCCTGAGAGACTTACCACCCCACCATCATACCCCTATGCCCCCTATCATCATCAGGATGATTACCAAAACCACCGCTTTTAG

Coding sequence (CDS)

ATGGTTCATGCCAATGCTATGGATATGTCCATTCAATGGTTGGTGTTTATTCCACAGGAACAAAAGTTTACTCGAGTGATTATTGGCTTAGATGTGCCAGGAACCCTTTTCTGTTCTGGAGAATATAATAGGTATATCAAGGAAAGGGAAAAATTAAAAGTGGATCCGAAGCGAGGGAAGAGAGCACTTTGTTCCGATGAATCGGAGGAAGAAAATCCGTTCCCGATCTACTCAGCTAGATCTGAATATGACACGTCGGCGATGGTATCTGCGTTAACTCAAGTGATAACGAGTGGGAGTGGGAGTGGCAGTGGGAGTAGCAGAAGCCTATCAGTAGTAGAAGAACCTGCAGCATCAGCGCGGGGAGATAATGAAGAAGGAGTGAAAAGGGAAAGCCGACATTATCGAGGAGTAAGGCAGAGACCGTGGGGAAAATGGGCTGCTGAGATTCGTGATCCAAAAAAGGCAGCAAGAGTGTGGTTGGGCACCTTTGACACTGCCGAGGCTGCGGCACTTGCTTACGATGAAGCTGCCCTCAGATTTAAGGGCACAAAAGCCAAGCTTAACTTCCCTGAGAGACTTACCACCCCACCATCATACCCCTATGCCCCCTATCATCATCAGGATGATTACCAAAACCACCGCTTTTAG

Protein sequence

MVHANAMDMSIQWLVFIPQEQKFTRVIIGLDVPGTLFCSGEYNRYIKEREKLKVDPKRGKRALCSDESEEENPFPIYSARSEYDTSAMVSALTQVITSGSGSGSGSSRSLSVVEEPAASARGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYPYAPYHHQDDYQNHRF*

Homology

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BLAST of Csa1G000550 vs. Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.6e-40
Identity = 94/160 (58.75%), Postives = 108/160 (67.50%), Query Frame = 1


Query: 59  GKRALCSDESEE-------ENPFPIYSARSEYDTSAMVSALTQVITSGSGSGSGSSRSLS 118
           GKR    DES+E       EN FP +SARS+YD  AMVSALTQVI + S S   +     
Sbjct: 8   GKRPFRGDESDEKKEADDDENIFPFFSARSQYDMRAMVSALTQVIGNQSSSHDNNQHQPV 67

Query: 119 VV--EEPAASARGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEA 178
           V   ++P   A    ++G+ R+ RHYRGVRQRPWGKWAAEIRDP+KAARVWLGTF+TAEA
Sbjct: 68  VYNQQDPNPPAPPTQDQGLLRK-RHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEA 127

Query: 179 AALAYDEAALRFKGTKAKLNFPER---------LTTPPSY 201
           AALAYD AAL+FKG+KAKLNFPER          T PP+Y
Sbjct: 128 AALAYDNAALKFKGSKAKLNFPERAQLASNTSTTTGPPNY 166

[Close]

BLAST of Csa1G000550 vs. Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.9e-38
Identity = 87/147 (59.18%), Postives = 102/147 (69.39%), Query Frame = 1


Query: 59  GKRALCSDESEE----ENPFPIYSARSEYDTSAMVSALTQVITSGSGSGSGSSRSL---- 118
           GKR    DESEE    EN FP++SARS++D   MVSALTQVI +       +  S+    
Sbjct: 3   GKRPFGGDESEEREEDENLFPVFSARSQHDMRVMVSALTQVIGNQQSKSHDNISSIDDNY 62

Query: 119 -SVV--EEPAASARGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTA 178
            SV   ++P       +++      RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTF+TA
Sbjct: 63  PSVYNPQDPNQQVAPTHQDQGDLRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETA 122

Query: 179 EAAALAYDEAALRFKGTKAKLNFPERL 195
           E+AALAYDEAAL+FKG+KAKLNFPER+
Sbjct: 123 ESAALAYDEAALKFKGSKAKLNFPERV 149

[Close]

BLAST of Csa1G000550 vs. Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 131.7 bits (330), Expect = 9.5e-30
Identity = 76/141 (53.90%), Postives = 88/141 (62.41%), Query Frame = 1


Query: 86  SAMVSALTQVITS----------GSGSGSGSSRSLSVVEE---PAASARGDNE------- 145
           SAMVSALTQV+++           S S +G  R    ++    P++ AR D+        
Sbjct: 2   SAMVSALTQVVSARSQTEAEGAHSSSSSAGHKRGWLGIDSAPIPSSFARVDSSHNPIEES 61

Query: 146 ------EGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAAL 199
                 E  + + R YRGVRQRPWGKWAAEIRDP +AARVWLGTFDTAEAAA AYDEAAL
Sbjct: 62  MSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAAL 121

[Close]

BLAST of Csa1G000550 vs. Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28
Identity = 71/120 (59.17%), Postives = 83/120 (69.17%), Query Frame = 1


Query: 88  MVSALTQVITSGSGSGSGSSRSLSVVEEPAASARGDNEEGVKRESRHYRGVRQRPWGKWA 147
           MVSAL++VI + +          S   +P       +++  +R  RHYRGVRQRPWGKWA
Sbjct: 1   MVSALSRVIENPTDPPVKQELDKSDQHQP-------DQDQPRR--RHYRGVRQRPWGKWA 60

Query: 148 AEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERL---TTPPSYPYAP 205
           AEIRDPKKAARVWLGTF+TAE AALAYD AAL+FKGTKAKLNFPER+   TT  +  +AP
Sbjct: 61  AEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERVQGPTTTTTISHAP 111

[Close]

BLAST of Csa1G000550 vs. Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-27
Identity = 74/148 (50.00%), Postives = 81/148 (54.73%), Query Frame = 1


Query: 59  GKRALCSDES----EEENPFPIYSARSEYDTSAMVSALTQVITSGSGSGSGSSRSLSVVE 118
           GKR L  +      EE+      S  SE D S  VS LT      S     SS +L    
Sbjct: 4   GKRPLSPESMAGNREEKKELCCCSTLSESDVSDFVSELTGQPIPSSIDDQSSSLTL---- 63

Query: 119 EPAASARGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAY 178
                     +E      R+YRGVRQRPWGKWAAEIRDP KAARVWLGTFDTAE AALAY
Sbjct: 64  ----------QEKSNSRQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAY 123

Query: 179 DEAALRFKGTKAKLNFPERLTTPPSYPY 203
           D+AA  F+G KAKLNFPE +   P+  Y
Sbjct: 124 DKAAFEFRGHKAKLNFPEHIRVNPTQLY 137

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BLAST of Csa1G000550 vs. TrEMBL
Match: A0A0A0LTV8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000550 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 1.6e-121
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1


Query: 1   MVHANAMDMSIQWLVFIPQEQKFTRVIIGLDVPGTLFCSGEYNRYIKEREKLKVDPKRGK 60
           MVHANAMDMSIQWLVFIPQEQKFTRVIIGLDVPGTLFCSGEYNRYIKEREKLKVDPKRGK
Sbjct: 1   MVHANAMDMSIQWLVFIPQEQKFTRVIIGLDVPGTLFCSGEYNRYIKEREKLKVDPKRGK 60

Query: 61  RALCSDESEEENPFPIYSARSEYDTSAMVSALTQVITSGSGSGSGSSRSLSVVEEPAASA 120
           RALCSDESEEENPFPIYSARSEYDTSAMVSALTQVITSGSGSGSGSSRSLSVVEEPAASA
Sbjct: 61  RALCSDESEEENPFPIYSARSEYDTSAMVSALTQVITSGSGSGSGSSRSLSVVEEPAASA 120

Query: 121 RGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALR 180
           RGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALR
Sbjct: 121 RGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALR 180

Query: 181 FKGTKAKLNFPERLTTPPSYPYAPYHHQDDYQNHRF 217
           FKGTKAKLNFPERLTTPPSYPYAPYHHQDDYQNHRF
Sbjct: 181 FKGTKAKLNFPERLTTPPSYPYAPYHHQDDYQNHRF 216

[Close]

BLAST of Csa1G000550 vs. TrEMBL
Match: E5GBL4_CUCME (AP2 domain transcription factor RAP2.3 OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 7.5e-66
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 1


Query: 88  MVSALTQVITSGSGSGSGSSRSLSVVEEPAASARGDNEEGVKRESRHYRGVRQRPWGKWA 147
           MVSALTQVITSGSGSGSGSSRSLSVVEEPAAS RGDNEEGVKRESRHYRGVRQRPWGKWA
Sbjct: 1   MVSALTQVITSGSGSGSGSSRSLSVVEEPAASVRGDNEEGVKRESRHYRGVRQRPWGKWA 60

Query: 148 AEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYPYAPYHH 207
           AEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSY YAPYHH
Sbjct: 61  AEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYSYAPYHH 120

Query: 208 QDDYQNHRF 217
           QDD+Q+HRF
Sbjct: 121 QDDHQDHRF 129

[Close]

BLAST of Csa1G000550 vs. TrEMBL
Match: K4DF15_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.0e-42
Identity = 98/169 (57.99%), Postives = 119/169 (70.41%), Query Frame = 1


Query: 54  VDPKRGKRALCSDESEEENP--FPIYSARSEYDTSAMVSALTQVITSGSG----SGSGSS 113
           VD + GKR   S+E EE+    FPIYSARS++D SAMVS L+QVI++ +     S S S 
Sbjct: 2   VDRRYGKRPFSSNEWEEKEDINFPIYSARSQHDMSAMVSVLSQVISNTNNTTNISSSSSM 61

Query: 114 RSLSVVEEPAASARGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTA 173
             +  +  P  +    +E+G ++  RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTA
Sbjct: 62  HEIDPLTLPQPTTNQIHEQGNQQRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTA 121

Query: 174 EAAALAYDEAALRFKGTKAKLNFPERLTTPPSYPYAPYHHQDDYQNHRF 217
           EAAALAYDEAALRFKG KAKLNFPER+ +  +  Y    HQ   Q++ F
Sbjct: 122 EAAALAYDEAALRFKGNKAKLNFPERVQS-GNTQYLTTTHQQQQQHYAF 169

[Close]

BLAST of Csa1G000550 vs. TrEMBL
Match: A0A061FZL7_THECC (Integrase-type DNA-binding superfamily protein, putative OS=Theobroma cacao GN=TCM_014762 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.4e-41
Identity = 90/151 (59.60%), Postives = 109/151 (72.19%), Query Frame = 1


Query: 53  KVDPKRGKRALCSDESEEENP---FPIYSARSEYDTSAMVSALTQVITSGSGSGSGSSRS 112
           KVDP++GKR L  DESEE+     FP+YSARS+ D +AMV AL QVI + + + + +S  
Sbjct: 22  KVDPRQGKRPLSPDESEEKEEDHIFPVYSARSQQDMNAMVQALAQVIGNNNSNNNNNSNP 81

Query: 113 LS------VVEEPAASARGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGT 172
                     +   A  +  +++      RHYRGVRQRPWGKWAAEIRDPKKAARVWLGT
Sbjct: 82  FQPHDQHPTYQSDTAGQQNQSQDQGNVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGT 141

Query: 173 FDTAEAAALAYDEAALRFKGTKAKLNFPERL 195
           F+TAEAAALAYDEAALRFKG+KAKLNFPER+
Sbjct: 142 FETAEAAALAYDEAALRFKGSKAKLNFPERV 172

[Close]

BLAST of Csa1G000550 vs. TrEMBL
Match: D7M0H8_ARALL (Putative uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_487556 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.4e-40
Identity = 96/160 (60.00%), Postives = 113/160 (70.62%), Query Frame = 1


Query: 59  GKRALCSDESEE-------ENPFPIYSARSEYDTSAMVSALTQVITSGSGSGSGSSRSLS 118
           GKR   +DES+E       EN FP +SARS+YDT AMVSALTQVI + S S   +     
Sbjct: 8   GKRPFRADESDEKKEGDDDENIFPFFSARSQYDTRAMVSALTQVIGNQSSSHDNTQHQPV 67

Query: 119 VVEE--PAASARGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEA 178
           V  +  P   A    ++G+ R+ RHYRGVRQRPWGKWAAEIRDP+KAARVWLGTF+TAEA
Sbjct: 68  VYNQQNPNQPAPPTQDQGLVRK-RHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEA 127

Query: 179 AALAYDEAALRFKGTKAKLNFPER---------LTTPPSY 201
           AALAYDEAAL+FKG+KAKLNFPER         +T PP+Y
Sbjct: 128 AALAYDEAALKFKGSKAKLNFPERAQLASNTNSITGPPNY 166

[Close]

BLAST of Csa1G000550 vs. TAIR10
Match: AT5G07310.1 (AT5G07310.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 167.5 bits (423), Expect = 8.8e-42
Identity = 94/160 (58.75%), Postives = 108/160 (67.50%), Query Frame = 1


Query: 59  GKRALCSDESEE-------ENPFPIYSARSEYDTSAMVSALTQVITSGSGSGSGSSRSLS 118
           GKR    DES+E       EN FP +SARS+YD  AMVSALTQVI + S S   +     
Sbjct: 8   GKRPFRGDESDEKKEADDDENIFPFFSARSQYDMRAMVSALTQVIGNQSSSHDNNQHQPV 67

Query: 119 VV--EEPAASARGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEA 178
           V   ++P   A    ++G+ R+ RHYRGVRQRPWGKWAAEIRDP+KAARVWLGTF+TAEA
Sbjct: 68  VYNQQDPNPPAPPTQDQGLLRK-RHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEA 127

Query: 179 AALAYDEAALRFKGTKAKLNFPER---------LTTPPSY 201
           AALAYD AAL+FKG+KAKLNFPER          T PP+Y
Sbjct: 128 AALAYDNAALKFKGSKAKLNFPERAQLASNTSTTTGPPNY 166

[Close]

BLAST of Csa1G000550 vs. TAIR10
Match: AT5G61890.1 (AT5G61890.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-39
Identity = 87/147 (59.18%), Postives = 102/147 (69.39%), Query Frame = 1


Query: 59  GKRALCSDESEE----ENPFPIYSARSEYDTSAMVSALTQVITSGSGSGSGSSRSL---- 118
           GKR    DESEE    EN FP++SARS++D   MVSALTQVI +       +  S+    
Sbjct: 3   GKRPFGGDESEEREEDENLFPVFSARSQHDMRVMVSALTQVIGNQQSKSHDNISSIDDNY 62

Query: 119 -SVV--EEPAASARGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTA 178
            SV   ++P       +++      RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTF+TA
Sbjct: 63  PSVYNPQDPNQQVAPTHQDQGDLRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETA 122

Query: 179 EAAALAYDEAALRFKGTKAKLNFPERL 195
           E+AALAYDEAAL+FKG+KAKLNFPER+
Sbjct: 123 ESAALAYDEAALKFKGSKAKLNFPERV 149

[Close]

BLAST of Csa1G000550 vs. TAIR10
Match: AT5G50080.1 (AT5G50080.1 ethylene response factor 110)

HSP 1 Score: 131.7 bits (330), Expect = 5.4e-31
Identity = 76/141 (53.90%), Postives = 88/141 (62.41%), Query Frame = 1


Query: 86  SAMVSALTQVITS----------GSGSGSGSSRSLSVVEE---PAASARGDNE------- 145
           SAMVSALTQV+++           S S +G  R    ++    P++ AR D+        
Sbjct: 2   SAMVSALTQVVSARSQTEAEGAHSSSSSAGHKRGWLGIDSAPIPSSFARVDSSHNPIEES 61

Query: 146 ------EGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAAL 199
                 E  + + R YRGVRQRPWGKWAAEIRDP +AARVWLGTFDTAEAAA AYDEAAL
Sbjct: 62  MSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAAL 121

[Close]

BLAST of Csa1G000550 vs. TAIR10
Match: AT5G13330.1 (AT5G13330.1 related to AP2 6l)

HSP 1 Score: 128.3 bits (321), Expect = 5.9e-30
Identity = 71/120 (59.17%), Postives = 83/120 (69.17%), Query Frame = 1


Query: 88  MVSALTQVITSGSGSGSGSSRSLSVVEEPAASARGDNEEGVKRESRHYRGVRQRPWGKWA 147
           MVSAL++VI + +          S   +P       +++  +R  RHYRGVRQRPWGKWA
Sbjct: 1   MVSALSRVIENPTDPPVKQELDKSDQHQP-------DQDQPRR--RHYRGVRQRPWGKWA 60

Query: 148 AEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERL---TTPPSYPYAP 205
           AEIRDPKKAARVWLGTF+TAE AALAYD AAL+FKGTKAKLNFPER+   TT  +  +AP
Sbjct: 61  AEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERVQGPTTTTTISHAP 111

[Close]

BLAST of Csa1G000550 vs. TAIR10
Match: AT2G33710.2 (AT2G33710.2 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 124.4 bits (311), Expect = 8.6e-29
Identity = 74/148 (50.00%), Postives = 81/148 (54.73%), Query Frame = 1


Query: 59  GKRALCSDES----EEENPFPIYSARSEYDTSAMVSALTQVITSGSGSGSGSSRSLSVVE 118
           GKR L  +      EE+      S  SE D S  VS LT      S     SS +L    
Sbjct: 4   GKRPLSPESMAGNREEKKELCCCSTLSESDVSDFVSELTGQPIPSSIDDQSSSLTL---- 63

Query: 119 EPAASARGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAY 178
                     +E      R+YRGVRQRPWGKWAAEIRDP KAARVWLGTFDTAE AALAY
Sbjct: 64  ----------QEKSNSRQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAY 123

Query: 179 DEAALRFKGTKAKLNFPERLTTPPSYPY 203
           D+AA  F+G KAKLNFPE +   P+  Y
Sbjct: 124 DKAAFEFRGHKAKLNFPEHIRVNPTQLY 137

[Close]

BLAST of Csa1G000550 vs. NCBI nr
Match: gi|700208335|gb|KGN63431.1| (hypothetical protein Csa_1G000550 [Cucumis sativus])

HSP 1 Score: 443.4 bits (1139), Expect = 2.4e-121
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1


Query: 1   MVHANAMDMSIQWLVFIPQEQKFTRVIIGLDVPGTLFCSGEYNRYIKEREKLKVDPKRGK 60
           MVHANAMDMSIQWLVFIPQEQKFTRVIIGLDVPGTLFCSGEYNRYIKEREKLKVDPKRGK
Sbjct: 1   MVHANAMDMSIQWLVFIPQEQKFTRVIIGLDVPGTLFCSGEYNRYIKEREKLKVDPKRGK 60

Query: 61  RALCSDESEEENPFPIYSARSEYDTSAMVSALTQVITSGSGSGSGSSRSLSVVEEPAASA 120
           RALCSDESEEENPFPIYSARSEYDTSAMVSALTQVITSGSGSGSGSSRSLSVVEEPAASA
Sbjct: 61  RALCSDESEEENPFPIYSARSEYDTSAMVSALTQVITSGSGSGSGSSRSLSVVEEPAASA 120

Query: 121 RGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALR 180
           RGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALR
Sbjct: 121 RGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALR 180

Query: 181 FKGTKAKLNFPERLTTPPSYPYAPYHHQDDYQNHRF 217
           FKGTKAKLNFPERLTTPPSYPYAPYHHQDDYQNHRF
Sbjct: 181 FKGTKAKLNFPERLTTPPSYPYAPYHHQDDYQNHRF 216

[Close]

BLAST of Csa1G000550 vs. NCBI nr
Match: gi|449440490|ref|XP_004138017.1| (PREDICTED: ethylene-responsive transcription factor ERF115 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 3.0e-68
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 88  MVSALTQVITSGSGSGSGSSRSLSVVEEPAASARGDNEEGVKRESRHYRGVRQRPWGKWA 147
           MVSALTQVITSGSGSGSGSSRSLSVVEEPAASARGDNEEGVKRESRHYRGVRQRPWGKWA
Sbjct: 1   MVSALTQVITSGSGSGSGSSRSLSVVEEPAASARGDNEEGVKRESRHYRGVRQRPWGKWA 60

Query: 148 AEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYPYAPYHH 207
           AEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYPYAPYHH
Sbjct: 61  AEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYPYAPYHH 120

Query: 208 QDDYQNHRF 217
           QDDYQNHRF
Sbjct: 121 QDDYQNHRF 129

[Close]

BLAST of Csa1G000550 vs. NCBI nr
Match: gi|659128773|ref|XP_008464362.1| (PREDICTED: ethylene-responsive transcription factor ERF115 [Cucumis melo])

HSP 1 Score: 258.5 bits (659), Expect = 1.1e-65
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 1


Query: 88  MVSALTQVITSGSGSGSGSSRSLSVVEEPAASARGDNEEGVKRESRHYRGVRQRPWGKWA 147
           MVSALTQVITSGSGSGSGSSRSLSVVEEPAAS RGDNEEGVKRESRHYRGVRQRPWGKWA
Sbjct: 1   MVSALTQVITSGSGSGSGSSRSLSVVEEPAASVRGDNEEGVKRESRHYRGVRQRPWGKWA 60

Query: 148 AEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYPYAPYHH 207
           AEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSY YAPYHH
Sbjct: 61  AEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYSYAPYHH 120

Query: 208 QDDYQNHRF 217
           QDD+Q+HRF
Sbjct: 121 QDDHQDHRF 129

[Close]

BLAST of Csa1G000550 vs. NCBI nr
Match: gi|971549058|ref|XP_015163844.1| (PREDICTED: ethylene-responsive transcription factor ERF114-like [Solanum tuberosum])

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 103/175 (58.86%), Postives = 123/175 (70.29%), Query Frame = 1


Query: 54  VDPKRGKRALCSDESEE-----ENPFPIYSARSEYDTSAMVSALTQVI--TSGSGSGSGS 113
           VD + GKR   S+ESEE     E+ FPIYSARS++D SAMVS L+QVI  T+ S + +  
Sbjct: 74  VDRRYGKRPFSSNESEEKEDINESIFPIYSARSQHDMSAMVSVLSQVIGNTNNSNNTTNI 133

Query: 114 SRSLSV-----VEEPAASARGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWL 173
           S S SV     +  P ++     E+G ++  RHYRGVRQRPWGKWAAEIRDPKKAARVWL
Sbjct: 134 SSSSSVHGINPLTLPQSTTNQIQEQGNEQRKRHYRGVRQRPWGKWAAEIRDPKKAARVWL 193

Query: 174 GTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYPYAPYHHQDDYQNHRF 217
           GTFDTAEAAALAYDEAALRFKG KAKLNFPER+ +  +  Y    HQ   Q++ F
Sbjct: 194 GTFDTAEAAALAYDEAALRFKGNKAKLNFPERVQS-GNTQYLTTTHQQQQQHYTF 247

[Close]

BLAST of Csa1G000550 vs. NCBI nr
Match: gi|723750672|ref|XP_004252471.2| (PREDICTED: ethylene-responsive transcription factor ERF114-like [Solanum lycopersicum])

HSP 1 Score: 180.6 bits (457), Expect = 2.9e-42
Identity = 98/169 (57.99%), Postives = 119/169 (70.41%), Query Frame = 1


Query: 54  VDPKRGKRALCSDESEEENP--FPIYSARSEYDTSAMVSALTQVITSGSG----SGSGSS 113
           VD + GKR   S+E EE+    FPIYSARS++D SAMVS L+QVI++ +     S S S 
Sbjct: 2   VDRRYGKRPFSSNEWEEKEDINFPIYSARSQHDMSAMVSVLSQVISNTNNTTNISSSSSM 61

Query: 114 RSLSVVEEPAASARGDNEEGVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTA 173
             +  +  P  +    +E+G ++  RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTA
Sbjct: 62  HEIDPLTLPQPTTNQIHEQGNQQRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTA 121

Query: 174 EAAALAYDEAALRFKGTKAKLNFPERLTTPPSYPYAPYHHQDDYQNHRF 217
           EAAALAYDEAALRFKG KAKLNFPER+ +  +  Y    HQ   Q++ F
Sbjct: 122 EAAALAYDEAALRFKGNKAKLNFPERVQS-GNTQYLTTTHQQQQQHYAF 169

The following BLAST results are available for this feature:

BLAST of Csa1G000550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EF115_ARATH	1.6e-40	58.75	Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF11...	[more]
EF114_ARATH	1.9e-38	59.18	Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF11...	[more]
EF110_ARATH	9.5e-30	53.90	Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF11...	[more]
EF113_ARATH	1.1e-28	59.17	Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF11...	[more]
EF112_ARATH	1.5e-27	50.00	Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF11...	[more]

BLAST of Csa1G000550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTV8_CUCSA	1.6e-121	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000550 PE=4 SV=1	[more]
E5GBL4_CUCME	7.5e-66	96.90	AP2 domain transcription factor RAP2.3 OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
K4DF15_SOLLC	2.0e-42	57.99	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A061FZL7_THECC	6.4e-41	59.60	Integrase-type DNA-binding superfamily protein, putative OS=Theobroma cacao GN=T...	[more]
D7M0H8_ARALL	5.4e-40	60.00	Putative uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata ...	[more]

BLAST of Csa1G000550 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07310.1	8.8e-42	58.75	Integrase-type DNA-binding superfamily protein	[more]
AT5G61890.1	1.1e-39	59.18	Integrase-type DNA-binding superfamily protein	[more]
AT5G50080.1	5.4e-31	53.90	ethylene response factor 110	[more]
AT5G13330.1	5.9e-30	59.17	related to AP2 6l	[more]
AT2G33710.2	8.6e-29	50.00	Integrase-type DNA-binding superfamily protein	[more]

BLAST of Csa1G000550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208335\|gb\|KGN63431.1\|	2.4e-121	100.00	hypothetical protein Csa_1G000550 [Cucumis sativus]	[more]
gi\|449440490\|ref\|XP_004138017.1\|	3.0e-68	100.00	PREDICTED: ethylene-responsive transcription factor ERF115 [Cucumis sativus]	[more]
gi\|659128773\|ref\|XP_008464362.1\|	1.1e-65	96.90	PREDICTED: ethylene-responsive transcription factor ERF115 [Cucumis melo]	[more]
gi\|971549058\|ref\|XP_015163844.1\|	1.3e-42	58.86	PREDICTED: ethylene-responsive transcription factor ERF114-like [Solanum tuberos...	[more]
gi\|723750672\|ref\|XP_004252471.2\|	2.9e-42	57.99	PREDICTED: ethylene-responsive transcription factor ERF114-like [Solanum lycoper...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0032008	positive regulation of TOR signaling
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU171260	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G000550.1	Csa1G000550.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU171260	CU171260	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 157..173 score: 9.6E-12coord: 135..146 score: 9.6
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 133..192 score: 4.1
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 134..183 score: 2.2
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 134..197 score: 1.3
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 134..191 score: 25
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 134..192 score: 2.62
None	No IPR available	PANTHER	PTHR31190	FAMILY NOT NAMED	coord: 65..193 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G000550	Cla019324	Watermelon (97103) v1	cuwmB094
Csa1G000550	MELO3C026158	Melon (DHL92) v3.5.1	cumeB054
Csa1G000550	ClCG06G018370	Watermelon (Charleston Gray)	cuwcgB081
Csa1G000550	Lsi06G016870	Bottle gourd (USVL1VR-Ls)	culsiB070
Csa1G000550	MELO3C026158.2	Melon (DHL92) v3.6.1	cumedB046
Csa1G000550	Cla97C06G128180	Watermelon (97103) v2	cuwmbB078
Csa1G000550	Bhi02G000464	Wax gourd	cuwgoB079
Csa1G000550	CSPI01G00060	Wild cucumber (PI 183967)	cpicuB000
Csa1G000550	Cucsa.156890	Cucumber (Gy14) v1	cgycuB224
Csa1G000550	CmaCh10G000100	Cucurbita maxima (Rimu)	cmacuB048
Csa1G000550	CmoCh10G000080	Cucurbita moschata (Rifu)	cmocuB037
Csa1G000550	CsGy1G000050	Cucumber (Gy14) v2	cgybcuB001
Csa1G000550	Carg10239	Silver-seed gourd	carcuB0391

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G000550	Silver-seed gourd	carcuB0636
Csa1G000550	Cucurbita maxima (Rimu)	cmacuB086
Csa1G000550	Cucurbita moschata (Rifu)	cmocuB076
Csa1G000550	Cucurbita pepo (Zucchini)	cpecuB361
Csa1G000550	Cucurbita pepo (Zucchini)	cpecuB653