CsGy7G016120 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G016120
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Ankyrin repeat protein
Location	Chr7 : 19835072 .. 19835986 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGGCACCAAATGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGCTTGCTTGGCAATGCTGTGGGAAGGTGGGTGCCACCTTCGGTGACGTCACTGGTAGCGTAGAACCCGCTCTCGATCGTAAATTACCCATCCGTGCCTTTGGATCACACGGCACACAAGCATCAGCGGTCGCACCTGTGAGCAGTGTCGGTGGAAAAGTTCTTGTTGTTTCTCAAGGTCATGAAATTAGCACGGCAAAAAGTGCCGGTAGTGTTGTCGTTTCTCATGGTAGAAAAACTGGTCCGAACGCCAACCGCGGAAGTGTCGTTGCGATTTCTAGTGGTCATGAAATTAGCAAGAAGAGTGGTGCTAGTAGTGTTGTTGTTTCTCATGGTGGCAAAACCGGTGTGAACAACGGCAGTAGTAGTTTGGTTGCAGTTTCTCAAGGTCAAGAAATCACGAAGAAGGGTAGCAGCAGCATCATTGTTTCCCGTGGTTCCAAGACCGGTGTGAATGGAGGCAGTAGTACTGTTGCTGTATCTACCGGTCACGAAGTAAGTGCAAAGAGTGGCAGCAGTGTTGTCATTTCTCATAAAGGCAAAATCGGTGCCAACAGGGGGAGCAGGAGTGTCGTCGTGGCCAGCGGTCAGGAAACTAGAGTGAAGAGCGCCACCAGTACTGTTGTTTCTCATGGACATGGAGCTGCCATGATTCGTGGTGGTGCTGGTTTATTTTCTCATGGAATCCATACTAATCATAGAAGCAGCAAAAGCTTTTTTTCTTCTAACAATATCCAAACTACAAAGGGGGCTGATGGTATTCACACAAGTGGCAGCAGTAGCGTTGTTGTTCACACTCATCACCAAACTACAAGCACCGTTAGCGGTAGCGTTTTTTCTCATGGAGCTTTCAATGCTCAACATTAG

mRNA sequence

ATGGAAATGGCACCAAATGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGCTTGCTTGGCAATGCTGTGGGAAGGTGGGTGCCACCTTCGGTGACGTCACTGGTAGCGTAGAACCCGCTCTCGATCGTAAATTACCCATCCGTGCCTTTGGATCACACGGCACACAAGCATCAGCGGTCGCACCTGTGAGCAGTGTCGGTGGAAAAGTTCTTGTTGTTTCTCAAGGTCATGAAATTAGCACGGCAAAAAGTGCCGGTAGTGTTGTCGTTTCTCATGGTAGAAAAACTGGTCCGAACGCCAACCGCGGAAGTGTCGTTGCGATTTCTAGTGGTCATGAAATTAGCAAGAAGAGTGGTGCTAGTAGTGTTGTTGTTTCTCATGGTGGCAAAACCGGTGTGAACAACGGCAGTAGTAGTTTGGTTGCAGTTTCTCAAGGTCAAGAAATCACGAAGAAGGGTAGCAGCAGCATCATTGTTTCCCGTGGTTCCAAGACCGGTGTGAATGGAGGCAGTAGTACTGTTGCTGTATCTACCGGTCACGAAGTAAGTGCAAAGAGTGGCAGCAGTGTTGTCATTTCTCATAAAGGCAAAATCGGTGCCAACAGGGGGAGCAGGAGTGTCGTCGTGGCCAGCGGTCAGGAAACTAGAGTGAAGAGCGCCACCAGTACTGTTGTTTCTCATGGACATGGAGCTGCCATGATTCGTGGTGGTGCTGGTTTATTTTCTCATGGAATCCATACTAATCATAGAAGCAGCAAAAGCTTTTTTTCTTCTAACAATATCCAAACTACAAAGGGGGCTGATGGTATTCACACAAGTGGCAGCAGTAGCGTTGTTGTTCACACTCATCACCAAACTACAAGCACCGTTAGCGGTAGCGTTTTTTCTCATGGAGCTTTCAATGCTCAACATTAG

Coding sequence (CDS)

ATGGAAATGGCACCAAATGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGCTTGCTTGGCAATGCTGTGGGAAGGTGGGTGCCACCTTCGGTGACGTCACTGGTAGCGTAGAACCCGCTCTCGATCGTAAATTACCCATCCGTGCCTTTGGATCACACGGCACACAAGCATCAGCGGTCGCACCTGTGAGCAGTGTCGGTGGAAAAGTTCTTGTTGTTTCTCAAGGTCATGAAATTAGCACGGCAAAAAGTGCCGGTAGTGTTGTCGTTTCTCATGGTAGAAAAACTGGTCCGAACGCCAACCGCGGAAGTGTCGTTGCGATTTCTAGTGGTCATGAAATTAGCAAGAAGAGTGGTGCTAGTAGTGTTGTTGTTTCTCATGGTGGCAAAACCGGTGTGAACAACGGCAGTAGTAGTTTGGTTGCAGTTTCTCAAGGTCAAGAAATCACGAAGAAGGGTAGCAGCAGCATCATTGTTTCCCGTGGTTCCAAGACCGGTGTGAATGGAGGCAGTAGTACTGTTGCTGTATCTACCGGTCACGAAGTAAGTGCAAAGAGTGGCAGCAGTGTTGTCATTTCTCATAAAGGCAAAATCGGTGCCAACAGGGGGAGCAGGAGTGTCGTCGTGGCCAGCGGTCAGGAAACTAGAGTGAAGAGCGCCACCAGTACTGTTGTTTCTCATGGACATGGAGCTGCCATGATTCGTGGTGGTGCTGGTTTATTTTCTCATGGAATCCATACTAATCATAGAAGCAGCAAAAGCTTTTTTTCTTCTAACAATATCCAAACTACAAAGGGGGCTGATGGTATTCACACAAGTGGCAGCAGTAGCGTTGTTGTTCACACTCATCACCAAACTACAAGCACCGTTAGCGGTAGCGTTTTTTCTCATGGAGCTTTCAATGCTCAACATTAG

Protein sequence

MEMAPNGFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAPVSSVGGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANRGSVVAISSGHEISKKSGASSVVVSHGGKTGVNNGSSSLVAVSQGQEITKKGSSSIIVSRGSKTGVNGGSSTVAVSTGHEVSAKSGSSVVISHKGKIGANRGSRSVVVASGQETRVKSATSTVVSHGHGAAMIRGGAGLFSHGIHTNHRSSKSFFSSNNIQTTKGADGIHTSGSSSVVVHTHHQTTSTVSGSVFSHGAFNAQH

Homology

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BLAST of CsGy7G016120 vs. NCBI nr
Match: KGN44963.1 (Ankyrin repeat protein [Cucumis sativus])

HSP 1 Score: 296.2 bits (757), Expect = 1.3e-76
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0


Query: 1   MEMAPNGFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAV 60
           MEMAPNGFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAV
Sbjct: 1   MEMAPNGFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAV 60

Query: 61  APVSSVGGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANXXXXXXXXXXXXXXXXXXX 120
           APVSSVGGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANXXXXXXXXXXXXXXXXXXX
Sbjct: 61  APVSSVGGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSKTGXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSKTGXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSKTGXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGL 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGL
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGL 240

Query: 241 FSHGIHTNHRSSKSFFSSNNIQTTKGADGIHTSGSSSVVVHTHHQTTSTVSGSVFSHGAF 300
           FSHGIHTNHRSSKSFFSSNNIQTTKGADGIHTSGSSSVVVHTHHQTTSTVSGSVFSHGAF
Sbjct: 241 FSHGIHTNHRSSKSFFSSNNIQTTKGADGIHTSGSSSVVVHTHHQTTSTVSGSVFSHGAF 300

Query: 301 NAQH 305
           NAQH
Sbjct: 301 NAQH 304

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BLAST of CsGy7G016120 vs. NCBI nr
Match: XP_023004882.1 (uncharacterized protein KIAA0754-like [Cucurbita maxima])

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-13
Identity = 45/83 (54.22%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 7  GFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAPVSSV 66
          GFKLFHTLFL++A QCC KVGATFGDVTG V   LD +   RAFG H TQA  +AP+ S 
Sbjct: 4  GFKLFHTLFLLMALQCCAKVGATFGDVTGDVN--LDSQFSFRAFGLHDTQAPTIAPIGS- 63

Query: 67 GGKVLVVSQGHEISTAKSAGSVV 90
                     ++S A S GS+V
Sbjct: 64 ---------STQVSAATSVGSIV 74

[Close]

BLAST of CsGy7G016120 vs. NCBI nr
Match: XP_022975301.1 (uncharacterized protein LOC111474444 isoform X3 [Cucurbita maxima])

HSP 1 Score: 84.3 bits (207), Expect = 7.6e-13
Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 6  NGFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAPVSS 65
          NGFKLFHT+FLV+ WQ C KVGATFGD TG +   LD +   RAFGSH TQA  VAP+ S
Sbjct: 5  NGFKLFHTIFLVIVWQYCAKVGATFGDETGVIN--LDHQFSFRAFGSHDTQAPIVAPIGS 63

Query: 66 V 67
          +
Sbjct: 65 I 63

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BLAST of CsGy7G016120 vs. NCBI nr
Match: XP_022925496.1 (uncharacterized protein LOC111432782 isoform X1 [Cucurbita moschata] >XP_022925497.1 uncharacterized protein LOC111432782 isoform X2 [Cucurbita moschata])

HSP 1 Score: 84.0 bits (206), Expect = 9.9e-13
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 7  GFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAPVSSV 66
          GFKLFHTLFLV+AWQ C KVGAT+GDVTG V+  LD +   RAFGSH TQ  A+AP++S 
Sbjct: 6  GFKLFHTLFLVVAWQYCVKVGATYGDVTGVVK--LDHQFSFRAFGSHDTQTPAIAPIAS- 65

Query: 67 GGKVLVVSQGHEISTAKSA 86
            +VLV S    I+    A
Sbjct: 66 STEVLVASPFGSIAQTPEA 81

[Close]

BLAST of CsGy7G016120 vs. NCBI nr
Match: XP_022973509.1 (myosin light chain kinase, smooth muscle-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 84.0 bits (206), Expect = 9.9e-13
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 7  GFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAPVSS 66
          GFKLFHTLFLV+AWQCC KVGATFGDVTG+V   LD +   RA GSH T+A   AP+ S
Sbjct: 6  GFKLFHTLFLVVAWQCCAKVGATFGDVTGAVN--LDDQFSFRATGSHDTKAPVTAPIGS 62

[Close]

BLAST of CsGy7G016120 vs. TrEMBL
Match: tr|A0A0A0K662|A0A0A0K662_CUCSA (Ankyrin repeat protein OS=Cucumis sativus OX=3659 GN=Csa_7G398740 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 8.4e-77
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0


Query: 1   MEMAPNGFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAV 60
           MEMAPNGFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAV
Sbjct: 1   MEMAPNGFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAV 60

Query: 61  APVSSVGGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANXXXXXXXXXXXXXXXXXXX 120
           APVSSVGGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANXXXXXXXXXXXXXXXXXXX
Sbjct: 61  APVSSVGGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSKTGXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSKTGXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSKTGXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGL 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGL
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGL 240

Query: 241 FSHGIHTNHRSSKSFFSSNNIQTTKGADGIHTSGSSSVVVHTHHQTTSTVSGSVFSHGAF 300
           FSHGIHTNHRSSKSFFSSNNIQTTKGADGIHTSGSSSVVVHTHHQTTSTVSGSVFSHGAF
Sbjct: 241 FSHGIHTNHRSSKSFFSSNNIQTTKGADGIHTSGSSSVVVHTHHQTTSTVSGSVFSHGAF 300

Query: 301 NAQH 305
           NAQH
Sbjct: 301 NAQH 304

[Close]

BLAST of CsGy7G016120 vs. TrEMBL
Match: tr|A0A0A0K7W7|A0A0A0K7W7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399280 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-05
Identity = 44/124 (35.48%), Postives = 57/124 (45.97%), Query Frame = 0


Query: 1   MEMAPNGFKLFHTLFLVLAWQ-CCGKVGATFGDVTGSVEPALDRKLPIRAFG-------- 60
           MEMA  GFKLF TL LV AW+ CC +VGATF D TG V   L+ +   RAFG        
Sbjct: 1   MEMA-RGFKLFQTLCLVFAWKYCCAQVGATFSDATGVVNAGLNHQFSFRAFGWPHIGTPD 60

Query: 61  ------------SHGTQASAVAPV---SSVGGKVLVVSQGHEISTAKSAGSVVVSHGRKT 101
                        H    + +APV   + +  +  V S   +I      G  VVSH  ++
Sbjct: 61  VDGSITSTVKKQIHAEAPAGIAPVGLETMINKEDKVQSYDLDIIKQIKGGGAVVSHDHES 120

[Close]

BLAST of CsGy7G016120 vs. TrEMBL
Match: tr|A0A0A0K5J0|A0A0A0K5J0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.6e-05
Identity = 36/93 (38.71%), Postives = 45/93 (48.39%), Query Frame = 0


Query: 7  GFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFG--------------- 66
          GFKLF TLFLV AWQ C KV ATF DVTG V   L+     R FG               
Sbjct: 4  GFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGSLAS 63

Query: 67 ---SHGTQASAVAPVSSVGGKVLVVSQGHEIST 82
             +H    + +APV    G    +++G ++ST
Sbjct: 64 TVNNHAEAPTGIAPV----GLDTPINKGDKVST 92

The following BLAST results are available for this feature:

BLAST of CsGy7G016120 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44963.1	1.3e-76	100.00	Ankyrin repeat protein [Cucumis sativus]	[more]
XP_023004882.1	4.4e-13	54.22	uncharacterized protein KIAA0754-like [Cucurbita maxima]	[more]
XP_022975301.1	7.6e-13	63.93	uncharacterized protein LOC111474444 isoform X3 [Cucurbita maxima]	[more]
XP_022925496.1	9.9e-13	58.23	uncharacterized protein LOC111432782 isoform X1 [Cucurbita moschata] >XP_0229254...	[more]
XP_022973509.1	9.9e-13	67.80	myosin light chain kinase, smooth muscle-like isoform X2 [Cucurbita maxima]	[more]

BLAST of CsGy7G016120 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy7G016120 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy7G016120 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K662\|A0A0A0K662_CUCSA	8.4e-77	100.00	Ankyrin repeat protein OS=Cucumis sativus OX=3659 GN=Csa_7G398740 PE=4 SV=1	[more]
tr\|A0A0A0K7W7\|A0A0A0K7W7_CUCSA	1.3e-05	35.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399280 PE=4 SV=1	[more]
tr\|A0A0A0K5J0\|A0A0A0K5J0_CUCSA	8.6e-05	38.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G016120.1	CsGy7G016120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..104

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G016120	Cla015080	Watermelon (97103) v1	cgybwmB522
CsGy7G016120	Csa7G398740	Cucumber (Chinese Long) v2	cgybcuB323
CsGy7G016120	MELO3C015979	Melon (DHL92) v3.5.1	cgybmeB470
CsGy7G016120	ClCG09G005750	Watermelon (Charleston Gray)	cgybwcgB479
CsGy7G016120	ClCG09G005580	Watermelon (Charleston Gray)	cgybwcgB486
CsGy7G016120	CSPI07G17690	Wild cucumber (PI 183967)	cgybcpiB331
CsGy7G016120	CmaCh08G004340	Cucurbita maxima (Rimu)	cgybcmaB973
CsGy7G016120	MELO3C015979.2	Melon (DHL92) v3.6.1	cgybmedB467
CsGy7G016120	CsaV3_7G029480	Cucumber (Chinese Long) v3	cgybcucB347
CsGy7G016120	Cla97C09G168070	Watermelon (97103) v2	cgybwmbB543
CsGy7G016120	Bhi09G000740	Wax gourd	cgybwgoB660

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G016120	Cucumber (Gy14) v2	cgybcgybB134
CsGy7G016120	Cucurbita maxima (Rimu)	cgybcmaB925
CsGy7G016120	Cucurbita moschata (Rifu)	cgybcmoB909
CsGy7G016120	Cucurbita moschata (Rifu)	cgybcmoB955
CsGy7G016120	Cucurbita pepo (Zucchini)	cgybcpeB906
CsGy7G016120	Cucurbita pepo (Zucchini)	cgybcpeB931
CsGy7G016120	Bottle gourd (USVL1VR-Ls)	cgyblsiB472
CsGy7G016120	Melon (DHL92) v3.5.1	cgybmeB501
CsGy7G016120	Melon (DHL92) v3.6.1	cgybmedB497
CsGy7G016120	Watermelon (Charleston Gray)	cgybwcgB492
CsGy7G016120	Watermelon (97103) v1	cgybwmB537
CsGy7G016120	Watermelon (97103) v1	cgybwmB530
CsGy7G016120	Silver-seed gourd	carcgybB0120
CsGy7G016120	Silver-seed gourd	carcgybB0569
CsGy7G016120	Silver-seed gourd	carcgybB0807
CsGy7G016120	Cucumber (Chinese Long) v3	cgybcucB336
CsGy7G016120	Watermelon (97103) v2	cgybwmbB490
CsGy7G016120	Watermelon (97103) v2	cgybwmbB536
CsGy7G016120	Wax gourd	cgybwgoB618
CsGy7G016120	Wax gourd	cgybwgoB626