MELO3C015979.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015979.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Location	chr01 : 32218110 .. 32219354 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCAAGCACTCATACTTTCCCTTCACATTTTGTGAAAAGAGCTTGAAATCCCTACAATTTAAACTCACGCCATTTTTACCAAGGTAATGACACCAAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGCTTGTTTGGCAATGTTGTGGAAAGGTGGATGCCACTTTCGGTGACTTCACTGGTAGCGTAGAACCCGCTGTCGATAGTAAATTCCCCTTCCGTGCCTTTGGATCACACGGCACACATACACCAGCGGTTGCACCAGTGAGCAGCGTCGGCGGAAAAATTCTTGTTGTTTCTCATGGTCATGAAACCAGCACGGCAAAGGGTGCCGGTAGTGTTGTCATTTCTCATGGTAAAAAAACTGGTGCGAACGGCAACGGCGGAAGTGTCGTTGCTATTTCTAGTGGTCATGAAATCAGCAAGAAGAGTGGTGGTAGTAGTGTTATTGTTTCTCGTGGTGGCAAAACCGGTGTGAAGAACGGTAGTAGTTTGGTTGCGGTTTCTCAAGGTCAAGAAATCACGAAGAAGGGTAGCGGCAGCATCATTGTTGCCCGTGGTTCCAAGACCGGTGTGAATGGAGGCGGTAGTATTGTTGCTGTATCTAGCGGTCACGAAGTGAATGCAAAGAGTGGCGGCAGTGTTGTCATTTCCCATAGAGGCAAAATCGGTGGGAACAAGGGAAGAAGGAGTGTCGTCGTGTCCAGCGGTCAGGAAACTAGAGTGAAGAGCGCCACCAGTACAGTTGTTTCTCATGGACATGGAGCTGGCATGATTCGTGGTGGTGCTGGTTTGTTTTCTCAAGGAATCCATACTAGTAAGAGCAGCAGCAGCAAAAGCATGTTTGCATCGCACAATGTCCAAACTACAAAGGGAGCTCATGGTATTCACACAAGTGGCAGCAGCAGCGTTATCTTTCATACTCATCACCAAACTACAAGCACCATTAGCGGTAGCGTTGTTTCTCATGGAGGTTTCAATGCTCAACCTTAACACAACTTAAGGCTATATATATGTTGTATTATGCCTAATTCTAAAGCACCATTCAAATTTAAAAAATTTTTTAATTGAATGGAAAGATTGTTTGACTCACACAATACTTTTTGTGTCCCAACAACATTATGATAATTTTGCTCTAAAACCCAATTTGTGTTTCTAACAGAAACTGTATTAGTTAAGGCTTTAAAATGAAAATTGTACCCCTCTAAATTTTCAACTTTAAAAACTTCATTCATATGTGAA

mRNA sequence

ATCCAAGCACTCATACTTTCCCTTCACATTTTGTGAAAAGAGCTTGAAATCCCTACAATTTAAACTCACGCCATTTTTACCAAGGTAATGACACCAAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGCTTGTTTGGCAATGTTGTGGAAAGGTGGATGCCACTTTCGGTGACTTCACTGGTAGCGTAGAACCCGCTGTCGATAGTAAATTCCCCTTCCGTGCCTTTGGATCACACGGCACACATACACCAGCGGTTGCACCAGTGAGCAGCGTCGGCGGAAAAATTCTTGTTGTTTCTCATGGTCATGAAACCAGCACGGCAAAGGGTGCCGGTAGTGTTGTCATTTCTCATGGTAAAAAAACTGGTGCGAACGGCAACGGCGGAAGTGTCGTTGCTATTTCTAGTGGTCATGAAATCAGCAAGAAGAGTGGTGGTAGTAGTGTTATTGTTTCTCGTGGTGGCAAAACCGGTGTGAAGAACGGTAGTAGTTTGGTTGCGGTTTCTCAAGGTCAAGAAATCACGAAGAAGGGTAGCGGCAGCATCATTGTTGCCCGTGGTTCCAAGACCGGTGTGAATGGAGGCGGTAGTATTGTTGCTGTATCTAGCGGTCACGAAGTGAATGCAAAGAGTGGCGGCAGTGTTGTCATTTCCCATAGAGGCAAAATCGGTGGGAACAAGGGAAGAAGGAGTGTCGTCGTGTCCAGCGGTCAGGAAACTAGAGTGAAGAGCGCCACCAGTACAGTTGTTTCTCATGGACATGGAGCTGGCATGATTCGTGGTGGTGCTGGTTTGTTTTCTCAAGGAATCCATACTAGTAAGAGCAGCAGCAGCAAAAGCATGTTTGCATCGCACAATGTCCAAACTACAAAGGGAGCTCATGGTATTCACACAAGTGGCAGCAGCAGCGTTATCTTTCATACTCATCACCAAACTACAAGCACCATTAGCGGTAGCGTTGTTTCTCATGGAGGTTTCAATGCTCAACCTTAACACAACTTAAGGCTATATATATGTTGTATTATGCCTAATTCTAAAGCACCATTCAAATTTAAAAAATTTTTTAATTGAATGGAAAGATTGTTTGACTCACACAATACTTTTTGTGTCCCAACAACATTATGATAATTTTGCTCTAAAACCCAATTTGTGTTTCTAACAGAAACTGTATTAGTTAAGGCTTTAAAATGAAAATTGTACCCCTCTAAATTTTCAACTTTAAAAACTTCATTCATATGTGAA

Coding sequence (CDS)

ATGACACCAAAAGGTTTCAAGCTCTTTCACACCCTTTTCTTAGTGCTTGTTTGGCAATGTTGTGGAAAGGTGGATGCCACTTTCGGTGACTTCACTGGTAGCGTAGAACCCGCTGTCGATAGTAAATTCCCCTTCCGTGCCTTTGGATCACACGGCACACATACACCAGCGGTTGCACCAGTGAGCAGCGTCGGCGGAAAAATTCTTGTTGTTTCTCATGGTCATGAAACCAGCACGGCAAAGGGTGCCGGTAGTGTTGTCATTTCTCATGGTAAAAAAACTGGTGCGAACGGCAACGGCGGAAGTGTCGTTGCTATTTCTAGTGGTCATGAAATCAGCAAGAAGAGTGGTGGTAGTAGTGTTATTGTTTCTCGTGGTGGCAAAACCGGTGTGAAGAACGGTAGTAGTTTGGTTGCGGTTTCTCAAGGTCAAGAAATCACGAAGAAGGGTAGCGGCAGCATCATTGTTGCCCGTGGTTCCAAGACCGGTGTGAATGGAGGCGGTAGTATTGTTGCTGTATCTAGCGGTCACGAAGTGAATGCAAAGAGTGGCGGCAGTGTTGTCATTTCCCATAGAGGCAAAATCGGTGGGAACAAGGGAAGAAGGAGTGTCGTCGTGTCCAGCGGTCAGGAAACTAGAGTGAAGAGCGCCACCAGTACAGTTGTTTCTCATGGACATGGAGCTGGCATGATTCGTGGTGGTGCTGGTTTGTTTTCTCAAGGAATCCATACTAGTAAGAGCAGCAGCAGCAAAAGCATGTTTGCATCGCACAATGTCCAAACTACAAAGGGAGCTCATGGTATTCACACAAGTGGCAGCAGCAGCGTTATCTTTCATACTCATCACCAAACTACAAGCACCATTAGCGGTAGCGTTGTTTCTCATGGAGGTTTCAATGCTCAACCTTAA

Protein sequence

MTPKGFKLFHTLFLVLVWQCCGKVDATFGDFTGSVEPAVDSKFPFRAFGSHGTHTPAVAPVSSVGGKILVVSHGHETSTAKGAGSVVISHGKKTGANGNGGSVVAISSGHEISKKSGGSSVIVSRGGKTGVKNGSSLVAVSQGQEITKKGSGSIIVARGSKTGVNGGGSIVAVSSGHEVNAKSGGSVVISHRGKIGGNKGRRSVVVSSGQETRVKSATSTVVSHGHGAGMIRGGAGLFSQGIHTSKSSSSKSMFASHNVQTTKGAHGIHTSGSSSVIFHTHHQTTSTISGSVVSHGGFNAQP

Homology

[Close]

BLAST of MELO3C015979.2 vs. NCBI nr
Match: KGN44963.1 (Ankyrin repeat protein [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 3.3e-32
Identity = 231/301 (76.74%), Postives = 236/301 (78.41%), Query Frame = 0


Query: 1   MTPKGFKLFHTLFLVLVWQCCGKVDATFGDFTGSVEPAVDSKFPFRAFGSHGTHTPAVAP 60
           M P GFKLFHTLFLVL WQCCGKV ATFGD TGSVEPA+D K P RAFGSHGT   AVAP
Sbjct: 3   MAPNGFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAP 62

Query: 61  VSSVGGKILVVSHGHETSTAKGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           VSSVGGK+LVVS GHE STAK A                XXXXXXXXXXXXXXXXXXXXX
Sbjct: 63  VSSVGGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANXXXXXXXXXXXXXXXXXXXXX 122

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXXXX      XXXXXXXXXXXXXXXX
Sbjct: 123 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSKTGXXXXXXXXXXXXXXXX 182

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      
Sbjct: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGLFS 242

Query: 241 XXXXXXXXXXXXXXXXXNVQTTKGAHGIHTSGSSSVIFHTHHQTTSTISGSVVSHGGFNA 300
                            N+QTTKGA GIHTSGSSSV+ HTHHQTTST+SGSV SHG FNA
Sbjct: 243 HGIHTNHRSSKSFFSSNNIQTTKGADGIHTSGSSSVVVHTHHQTTSTVSGSVFSHGAFNA 302

Query: 301 Q 302
           Q
Sbjct: 303 Q 303

[Close]

BLAST of MELO3C015979.2 vs. NCBI nr
Match: XP_022925496.1 (uncharacterized protein LOC111432782 isoform X1 [Cucurbita moschata] >XP_022925497.1 uncharacterized protein LOC111432782 isoform X2 [Cucurbita moschata])

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-13
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 4  KGFKLFHTLFLVLVWQCCGKVDATFGDFTGSVEPAVDSKFPFRAFGSHGTHTPAVAPVSS 63
          KGFKLFHTLFLV+ WQ C KV AT+GD TG V+  +D +F FRAFGSH T TPA+AP++S
Sbjct: 5  KGFKLFHTLFLVVAWQYCVKVGATYGDVTGVVK--LDHQFSFRAFGSHDTQTPAIAPIAS 64

Query: 64 VGGKILVVS 73
             ++LV S
Sbjct: 65 -STEVLVAS 70

[Close]

BLAST of MELO3C015979.2 vs. NCBI nr
Match: XP_022925509.1 (uncharacterized protein LOC111432788 [Cucurbita moschata] >XP_022930128.1 uncharacterized protein LOC111436642 [Cucurbita moschata] >XP_022930129.1 uncharacterized protein LOC111436644 [Cucurbita moschata] >XP_022930186.1 uncharacterized protein LOC111436685 [Cucurbita moschata])

HSP 1 Score: 84.7 bits (208), Expect = 5.8e-13
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 4  KGFKLFHTLFLVLVWQCCGKVDATFGDFTGSVEPAVDSKFPFRAFGSHGTHTPAVAPV 62
          KGFKLFH+LFLV+VWQCC KVDATFGD  G V   +D +F FRAFGS  T  P VAP+
Sbjct: 5  KGFKLFHSLFLVIVWQCCAKVDATFGDVNGVVN--LDHQFSFRAFGSQDTQAPTVAPI 60

[Close]

BLAST of MELO3C015979.2 vs. NCBI nr
Match: XP_022973509.1 (myosin light chain kinase, smooth muscle-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 84.7 bits (208), Expect = 5.8e-13
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 4  KGFKLFHTLFLVLVWQCCGKVDATFGDFTGSVEPAVDSKFPFRAFGSHGTHTPAVAPVSS 63
          KGFKLFHTLFLV+ WQCC KV ATFGD TG+V   +D +F FRA GSH T  P  AP+ S
Sbjct: 5  KGFKLFHTLFLVVAWQCCAKVGATFGDVTGAVN--LDDQFSFRATGSHDTKAPVTAPIGS 62

[Close]

BLAST of MELO3C015979.2 vs. NCBI nr
Match: XP_022973508.1 (myosin light chain kinase, smooth muscle-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 84.7 bits (208), Expect = 5.8e-13
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 4  KGFKLFHTLFLVLVWQCCGKVDATFGDFTGSVEPAVDSKFPFRAFGSHGTHTPAVAPVSS 63
          KGFKLFHTLFLV+ WQCC KV ATFGD TG+V   +D +F FRA GSH T  P  AP+ S
Sbjct: 5  KGFKLFHTLFLVVAWQCCAKVGATFGDVTGAVN--LDDQFSFRATGSHDTKAPVTAPIGS 62

[Close]

BLAST of MELO3C015979.2 vs. TrEMBL
Match: tr|A0A0A0K662|A0A0A0K662_CUCSA (Ankyrin repeat protein OS=Cucumis sativus OX=3659 GN=Csa_7G398740 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.2e-32
Identity = 231/301 (76.74%), Postives = 236/301 (78.41%), Query Frame = 0


Query: 1   MTPKGFKLFHTLFLVLVWQCCGKVDATFGDFTGSVEPAVDSKFPFRAFGSHGTHTPAVAP 60
           M P GFKLFHTLFLVL WQCCGKV ATFGD TGSVEPA+D K P RAFGSHGT   AVAP
Sbjct: 3   MAPNGFKLFHTLFLVLAWQCCGKVGATFGDVTGSVEPALDRKLPIRAFGSHGTQASAVAP 62

Query: 61  VSSVGGKILVVSHGHETSTAKGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           VSSVGGK+LVVS GHE STAK A                XXXXXXXXXXXXXXXXXXXXX
Sbjct: 63  VSSVGGKVLVVSQGHEISTAKSAGSVVVSHGRKTGPNANXXXXXXXXXXXXXXXXXXXXX 122

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXXXX      XXXXXXXXXXXXXXXX
Sbjct: 123 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSKTGXXXXXXXXXXXXXXXX 182

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      
Sbjct: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGLFS 242

Query: 241 XXXXXXXXXXXXXXXXXNVQTTKGAHGIHTSGSSSVIFHTHHQTTSTISGSVVSHGGFNA 300
                            N+QTTKGA GIHTSGSSSV+ HTHHQTTST+SGSV SHG FNA
Sbjct: 243 HGIHTNHRSSKSFFSSNNIQTTKGADGIHTSGSSSVVVHTHHQTTSTVSGSVFSHGAFNA 302

Query: 301 Q 302
           Q
Sbjct: 303 Q 303

[Close]

BLAST of MELO3C015979.2 vs. TrEMBL
Match: tr|A0A0A0K5J0|A0A0A0K5J0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.9e-06
Identity = 30/53 (56.60%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 4  KGFKLFHTLFLVLVWQCCGKVDATFGDFTGSVEPAVDSKFPFRAFGSHGTHTP 57
          +GFKLF TLFLV  WQ C KVDATF D TG V   ++  F FR FG     TP
Sbjct: 3  RGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRGFGWPRIGTP 55

[Close]

BLAST of MELO3C015979.2 vs. TrEMBL
Match: tr|A0A0A0K7W7|A0A0A0K7W7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399280 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.5e-05
Identity = 29/56 (51.79%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 4  KGFKLFHTLFLVLVWQ-CCGKVDATFGDFTGSVEPAVDSKFPFRAFGSHGTHTPAV 59
          +GFKLF TL LV  W+ CC +V ATF D TG V   ++ +F FRAFG     TP V
Sbjct: 5  RGFKLFQTLCLVFAWKYCCAQVGATFSDATGVVNAGLNHQFSFRAFGWPHIGTPDV 60

The following BLAST results are available for this feature:

BLAST of MELO3C015979.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44963.1	3.3e-32	76.74	Ankyrin repeat protein [Cucumis sativus]	[more]
XP_022925496.1	2.6e-13	62.32	uncharacterized protein LOC111432782 isoform X1 [Cucurbita moschata] >XP_0229254...	[more]
XP_022925509.1	5.8e-13	67.24	uncharacterized protein LOC111432788 [Cucurbita moschata] >XP_022930128.1 unchar...	[more]
XP_022973509.1	5.8e-13	65.00	myosin light chain kinase, smooth muscle-like isoform X2 [Cucurbita maxima]	[more]
XP_022973508.1	5.8e-13	65.00	myosin light chain kinase, smooth muscle-like isoform X1 [Cucurbita maxima]	[more]

BLAST of MELO3C015979.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C015979.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C015979.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K662\|A0A0A0K662_CUCSA	2.2e-32	76.74	Ankyrin repeat protein OS=Cucumis sativus OX=3659 GN=Csa_7G398740 PE=4 SV=1	[more]
tr\|A0A0A0K5J0\|A0A0A0K5J0_CUCSA	5.9e-06	56.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1	[more]
tr\|A0A0A0K7W7\|A0A0A0K7W7_CUCSA	8.5e-05	51.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399280 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015979.2.1	MELO3C015979.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..223

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015979.2	Csa7G398740	Cucumber (Chinese Long) v2	cumedB511
MELO3C015979.2	CmaCh08G004340	Cucurbita maxima (Rimu)	cmamedB930
MELO3C015979.2	CsGy7G016120	Cucumber (Gy14) v2	cgybmedB467
MELO3C015979.2	Cla97C09G168240	Watermelon (97103) v2	medwmbB194
MELO3C015979.2	Bhi09G000740	Wax gourd	medwgoB255

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015979.2	Watermelon (Charleston Gray)	medwcgB155
MELO3C015979.2	Watermelon (Charleston Gray)	medwcgB178
MELO3C015979.2	Watermelon (97103) v1	medwmB181
MELO3C015979.2	Watermelon (97103) v1	medwmB206
MELO3C015979.2	Silver-seed gourd	carmedB0112
MELO3C015979.2	Cucumber (Chinese Long) v3	cucmedB538
MELO3C015979.2	Watermelon (97103) v2	medwmbB218
MELO3C015979.2	Cucumber (Gy14) v1	cgymedB368
MELO3C015979.2	Cucurbita maxima (Rimu)	cmamedB373
MELO3C015979.2	Cucurbita moschata (Rifu)	cmomedB359
MELO3C015979.2	Cucurbita pepo (Zucchini)	cpemedB145
MELO3C015979.2	Cucurbita pepo (Zucchini)	cpemedB341
MELO3C015979.2	Wild cucumber (PI 183967)	cpimedB520
MELO3C015979.2	Wild cucumber (PI 183967)	cpimedB525
MELO3C015979.2	Bottle gourd (USVL1VR-Ls)	lsimedB201