CsGy7G005500 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G005500
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Alkyl transferase
Location	Chr7 : 4041192 .. 4041637 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATCGAAGAGGCGGAAAATGTAGCAGAAGTAGTAGAAAAGGTAGCAGAACTAACAGAGAAAGTATCAACAAAAATTTGTGAGAAACTTCCTGAGAAGAGTAAGCTGAAAGAGGCAGCTGAAGTTGTAGAAAGTTATTCTAAGGAAATTGCCCATGATGCTCACCTAACACAAGATATCCTCCACAAGGTTTGTATATATCTCTCTATCTAATTTCATTTCTTTTTTCGTGTTTCATCCACGAGGTTTCACCAACCGAGTCATCTTTCATCGCTGAAAATTTATTGAAAATTGTCAAATTTCGAATTTTAGAAACAAACTTATGTGTTCTTGTCTCTTTTTTATCGTAGGTGGAAGAGTGGAAACTAAAAGTAGATAAGTCGAAGATAGATACGAACGAACCGAATAAAGAAGAAATAAGGCAGATTAGAGCAAACAAGTGA

mRNA sequence

ATGGTGATCGAAGAGGCGGAAAATGTAGCAGAAGTAGTAGAAAAGGTAGCAGAACTAACAGAGAAAGTATCAACAAAAATTTGTGAGAAACTTCCTGAGAAGAGTAAGCTGAAAGAGGCAGCTGAAGTTGTAGAAAGTTATTCTAAGGAAATTGCCCATGATGCTCACCTAACACAAGATATCCTCCACAAGGTGGAAGAGTGGAAACTAAAAGTAGATAAGTCGAAGATAGATACGAACGAACCGAATAAAGAAGAAATAAGGCAGATTAGAGCAAACAAGTGA

Coding sequence (CDS)

ATGGTGATCGAAGAGGCGGAAAATGTAGCAGAAGTAGTAGAAAAGGTAGCAGAACTAACAGAGAAAGTATCAACAAAAATTTGTGAGAAACTTCCTGAGAAGAGTAAGCTGAAAGAGGCAGCTGAAGTTGTAGAAAGTTATTCTAAGGAAATTGCCCATGATGCTCACCTAACACAAGATATCCTCCACAAGGTGGAAGAGTGGAAACTAAAAGTAGATAAGTCGAAGATAGATACGAACGAACCGAATAAAGAAGAAATAAGGCAGATTAGAGCAAACAAGTGA

Protein sequence

MVIEEAENVAEVVEKVAELTEKVSTKICEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEIRQIRANK

Homology

[Close]

BLAST of CsGy7G005500 vs. NCBI nr
Match: KGN43747.1 (hypothetical protein Csa_7G064570 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 28  CEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEI 87
           CEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEI
Sbjct: 416 CEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEI 475

Query: 88  RQIRANK 95
           RQIRANK
Sbjct: 476 RQIRANK 482

[Close]

BLAST of CsGy7G005500 vs. NCBI nr
Match: XP_011658811.1 (PREDICTED: uncharacterized protein LOC105436091 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 28  CEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEI 87
           CEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEI
Sbjct: 152 CEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEI 211

Query: 88  RQIRANK 95
           RQIRANK
Sbjct: 212 RQIRANK 218

[Close]

BLAST of CsGy7G005500 vs. NCBI nr
Match: XP_008455165.1 (PREDICTED: uncharacterized protein LOC103495399 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-18
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 29  EKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKE 86
           EKLPEKSKLKEAA+VVE+YSKEIAHDAHLTQDILHKVEEWK K+DKSKID NE NKE
Sbjct: 150 EKLPEKSKLKEAAQVVENYSKEIAHDAHLTQDILHKVEEWKQKIDKSKIDMNESNKE 206

[Close]

BLAST of CsGy7G005500 vs. NCBI nr
Match: XP_022141966.1 (uncharacterized protein LOC111012212 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 33  EKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNE 82
           EKSKLKEAAEVVE+YSK+IAHDAHLTQDILHKVEEWK K+DKS+   NE
Sbjct: 161 EKSKLKEAAEVVETYSKQIAHDAHLTQDILHKVEEWKQKLDKSETAINE 209

[Close]

BLAST of CsGy7G005500 vs. NCBI nr
Match: XP_022972002.1 (uncharacterized protein LOC111470651 [Cucurbita maxima])

HSP 1 Score: 80.1 bits (196), Expect = 4.4e-12
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 29  EKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEIR 88
           EKLPEKS++K+AAE VE YSKEIAHDA L Q ILHKVEEWK K+DKS+ D NE  K+ + 
Sbjct: 128 EKLPEKSRMKDAAEAVEKYSKEIAHDALLAQHILHKVEEWKQKLDKSEADINEQMKKIVN 187

Query: 89  Q 90
           +
Sbjct: 188 K 188

[Close]

BLAST of CsGy7G005500 vs. TAIR10
Match: AT2G14095.1 (unknown protein)

HSP 1 Score: 41.2 bits (95), Expect = 4.1e-04
Identity = 27/63 (42.86%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 35  SKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVD------KSKIDTNEPNKEEIR 92
           +KLK+ A V+E  S+  AH+AHLTQD LHKVE+    +D      K  ID    N E  +
Sbjct: 160 NKLKQVALVLEHISEVAAHEAHLTQDFLHKVEKVTQDIDDLEAMIKPLIDKKVANAETKQ 219

[Close]

BLAST of CsGy7G005500 vs. TrEMBL
Match: tr|A0A0A0K622|A0A0A0K622_CUCSA (Alkyl transferase OS=Cucumis sativus OX=3659 GN=Csa_7G064570 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 28  CEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEI 87
           CEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEI
Sbjct: 416 CEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEI 475

Query: 88  RQIRANK 95
           RQIRANK
Sbjct: 476 RQIRANK 482

[Close]

BLAST of CsGy7G005500 vs. TrEMBL
Match: tr|A0A1S3C099|A0A1S3C099_CUCME (uncharacterized protein LOC103495399 OS=Cucumis melo OX=3656 GN=LOC103495399 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.2e-19
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 29  EKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKE 86
           EKLPEKSKLKEAA+VVE+YSKEIAHDAHLTQDILHKVEEWK K+DKSKID NE NKE
Sbjct: 150 EKLPEKSKLKEAAQVVENYSKEIAHDAHLTQDILHKVEEWKQKIDKSKIDMNESNKE 206

[Close]

BLAST of CsGy7G005500 vs. TrEMBL
Match: tr|A0A2I4HBF5|A0A2I4HBF5_9ROSI (uncharacterized protein LOC109015438 OS=Juglans regia OX=51240 GN=LOC109015438 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.9e-04
Identity = 48/69 (69.57%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1  MVIEEAENVXXXXXXXXXXXXXXXXXXCEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQD 60
          MV+EE E  XXXXXXXXXXXXXXXX   EKLPE SKLKEAA +VE  SKE AHDA LT D
Sbjct: 1  MVVEEVEIXXXXXXXXXXXXXXXXXEFAEKLPEDSKLKEAALLVERVSKEAAHDAQLTTD 60

Query: 61 ILHKVEEWK 70
           +HK +  K
Sbjct: 61 FIHKADVLK 69

[Close]

BLAST of CsGy7G005500 vs. TrEMBL
Match: tr|A0A2P5EPA1|A0A2P5EPA1_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_168240 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.0e-04
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 1   MVIEEAENVXXXXXXXXXXXXXXXXXXCEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQD 60
           +V+E+ ENV  XXXX             +KLP+  +LKE A  VE  SK+ AHDA LT+D
Sbjct: 121 IVVEDVENVAEXXXXLAIVAENVSSEVADKLPDNGRLKETALFVERVSKKAAHDAQLTKD 180

Query: 61  ILHKVEEWK 70
            +HKV+E K
Sbjct: 181 FIHKVDELK 189

[Close]

BLAST of CsGy7G005500 vs. TrEMBL
Match: tr|A0A2I4HI61|A0A2I4HI61_9ROSI (uncharacterized protein LOC109018125 OS=Juglans regia OX=51240 GN=LOC109018125 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.0e-04
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 29  EKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEIR 88
           +KLPE  KLKEAA  VE  SKE AHDAHLT+D +HKV+   LK D   +     N ++I 
Sbjct: 165 DKLPENGKLKEAALFVERVSKEAAHDAHLTKDFIHKVD--ALKEDLEALLVEPMNIDQIA 224

Query: 89  QIRANK 95
           +++ ++
Sbjct: 225 KLQGSE 228

The following BLAST results are available for this feature:

BLAST of CsGy7G005500 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43747.1	2.2e-27	100.00	hypothetical protein Csa_7G064570 [Cucumis sativus]	[more]
XP_011658811.1	2.2e-27	100.00	PREDICTED: uncharacterized protein LOC105436091 [Cucumis sativus]	[more]
XP_008455165.1	1.1e-18	89.47	PREDICTED: uncharacterized protein LOC103495399 [Cucumis melo]	[more]
XP_022141966.1	1.2e-12	83.67	uncharacterized protein LOC111012212 [Momordica charantia]	[more]
XP_022972002.1	4.4e-12	67.21	uncharacterized protein LOC111470651 [Cucurbita maxima]	[more]

BLAST of CsGy7G005500 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14095.1	4.1e-04	42.86	unknown protein	[more]

BLAST of CsGy7G005500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy7G005500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K622\|A0A0A0K622_CUCSA	1.4e-27	100.00	Alkyl transferase OS=Cucumis sativus OX=3659 GN=Csa_7G064570 PE=3 SV=1	[more]
tr\|A0A1S3C099\|A0A1S3C099_CUCME	7.2e-19	89.47	uncharacterized protein LOC103495399 OS=Cucumis melo OX=3656 GN=LOC103495399 PE=...	[more]
tr\|A0A2I4HBF5\|A0A2I4HBF5_9ROSI	2.9e-04	69.57	uncharacterized protein LOC109015438 OS=Juglans regia OX=51240 GN=LOC109015438 P...	[more]
tr\|A0A2P5EPA1\|A0A2P5EPA1_9ROSA	5.0e-04	46.38	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_168240 PE=4 S...	[more]
tr\|A0A2I4HI61\|A0A2I4HI61_9ROSI	5.0e-04	46.97	uncharacterized protein LOC109018125 OS=Juglans regia OX=51240 GN=LOC109018125 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G005500.1	CsGy7G005500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 3..23
None	No IPR available	PANTHER	PTHR33735:SF4	EXPRESSED PROTEIN	coord: 1..73
None	No IPR available	PANTHER	PTHR33735	FAMILY NOT NAMED	coord: 1..73

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G005500	Csa7G064570	Cucumber (Chinese Long) v2	cgybcuB324
CsGy7G005500	CSPI07G05800	Wild cucumber (PI 183967)	cgybcpiB332
CsGy7G005500	CmaCh19G004670	Cucurbita maxima (Rimu)	cgybcmaB945
CsGy7G005500	Lsi03G007310	Bottle gourd (USVL1VR-Ls)	cgyblsiB489
CsGy7G005500	MELO3C018616.2	Melon (DHL92) v3.6.1	cgybmedB465
CsGy7G005500	CsaV3_7G006790	Cucumber (Chinese Long) v3	cgybcucB348
CsGy7G005500	Bhi05G000738	Wax gourd	cgybwgoB632

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G005500	Cucurbita maxima (Rimu)	cgybcmaB895
CsGy7G005500	Cucurbita moschata (Rifu)	cgybcmoB881
CsGy7G005500	Cucurbita moschata (Rifu)	cgybcmoB928
CsGy7G005500	Cucurbita pepo (Zucchini)	cgybcpeB911
CsGy7G005500	Cucurbita pepo (Zucchini)	cgybcpeB969
CsGy7G005500	Melon (DHL92) v3.5.1	cgybmeB468
CsGy7G005500	Watermelon (Charleston Gray)	cgybwcgB473
CsGy7G005500	Watermelon (97103) v1	cgybwmB518
CsGy7G005500	Silver-seed gourd	carcgybB0379
CsGy7G005500	Watermelon (97103) v2	cgybwmbB530