CsGy7G005500.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G005500.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Alkyl transferase
Location	Chr7 : 4041192 .. 4041637 (-)
Sequence length	285

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATCGAAGAGGCGGAAAATGTAGCAGAAGTAGTAGAAAAGGTAGCAGAACTAACAGAGAAAGTATCAACAAAAATTTGTGAGAAACTTCCTGAGAAGAGTAAGCTGAAAGAGGCAGCTGAAGTTGTAGAAAGTTATTCTAAGGAAATTGCCCATGATGCTCACCTAACACAAGATATCCTCCACAAGGTTTGTATATATCTCTCTATCTAATTTCATTTCTTTTTTCGTGTTTCATCCACGAGGTTTCACCAACCGAGTCATCTTTCATCGCTGAAAATTTATTGAAAATTGTCAAATTTCGAATTTTAGAAACAAACTTATGTGTTCTTGTCTCTTTTTTATCGTAGGTGGAAGAGTGGAAACTAAAAGTAGATAAGTCGAAGATAGATACGAACGAACCGAATAAAGAAGAAATAAGGCAGATTAGAGCAAACAAGTGA

mRNA sequence

ATGGTGATCGAAGAGGCGGAAAATGTAGCAGAAGTAGTAGAAAAGGTAGCAGAACTAACAGAGAAAGTATCAACAAAAATTTGTGAGAAACTTCCTGAGAAGAGTAAGCTGAAAGAGGCAGCTGAAGTTGTAGAAAGTTATTCTAAGGAAATTGCCCATGATGCTCACCTAACACAAGATATCCTCCACAAGGTGGAAGAGTGGAAACTAAAAGTAGATAAGTCGAAGATAGATACGAACGAACCGAATAAAGAAGAAATAAGGCAGATTAGAGCAAACAAGTGA

Coding sequence (CDS)

ATGGTGATCGAAGAGGCGGAAAATGTAGCAGAAGTAGTAGAAAAGGTAGCAGAACTAACAGAGAAAGTATCAACAAAAATTTGTGAGAAACTTCCTGAGAAGAGTAAGCTGAAAGAGGCAGCTGAAGTTGTAGAAAGTTATTCTAAGGAAATTGCCCATGATGCTCACCTAACACAAGATATCCTCCACAAGGTGGAAGAGTGGAAACTAAAAGTAGATAAGTCGAAGATAGATACGAACGAACCGAATAAAGAAGAAATAAGGCAGATTAGAGCAAACAAGTGA

Protein sequence

MVIEEAENVAEVVEKVAELTEKVSTKICEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEIRQIRANK

Homology

[Close]

BLAST of CsGy7G005500.1 vs. NCBI nr
Match: KGN43747.1 (hypothetical protein Csa_7G064570 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 28  CEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEI 87
           CEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEI
Sbjct: 416 CEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEI 475

Query: 88  RQIRANK 95
           RQIRANK
Sbjct: 476 RQIRANK 482

[Close]

BLAST of CsGy7G005500.1 vs. NCBI nr
Match: XP_011658811.1 (PREDICTED: uncharacterized protein LOC105436091 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 28  CEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEI 87
           CEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEI
Sbjct: 152 CEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEI 211

Query: 88  RQIRANK 95
           RQIRANK
Sbjct: 212 RQIRANK 218

[Close]

BLAST of CsGy7G005500.1 vs. NCBI nr
Match: XP_008455165.1 (PREDICTED: uncharacterized protein LOC103495399 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-18
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 29  EKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKE 86
           EKLPEKSKLKEAA+VVE+YSKEIAHDAHLTQDILHKVEEWK K+DKSKID NE NKE
Sbjct: 150 EKLPEKSKLKEAAQVVENYSKEIAHDAHLTQDILHKVEEWKQKIDKSKIDMNESNKE 206

[Close]

BLAST of CsGy7G005500.1 vs. NCBI nr
Match: XP_022141966.1 (uncharacterized protein LOC111012212 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 33  EKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNE 82
           EKSKLKEAAEVVE+YSK+IAHDAHLTQDILHKVEEWK K+DKS+   NE
Sbjct: 161 EKSKLKEAAEVVETYSKQIAHDAHLTQDILHKVEEWKQKLDKSETAINE 209

[Close]

BLAST of CsGy7G005500.1 vs. NCBI nr
Match: XP_022972002.1 (uncharacterized protein LOC111470651 [Cucurbita maxima])

HSP 1 Score: 80.1 bits (196), Expect = 4.4e-12
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 29  EKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEIR 88
           EKLPEKS++K+AAE VE YSKEIAHDA L Q ILHKVEEWK K+DKS+ D NE  K+ + 
Sbjct: 128 EKLPEKSRMKDAAEAVEKYSKEIAHDALLAQHILHKVEEWKQKLDKSEADINEQMKKIVN 187

Query: 89  Q 90
           +
Sbjct: 188 K 188

[Close]

BLAST of CsGy7G005500.1 vs. TAIR10
Match: AT2G14095.1 (unknown protein)

HSP 1 Score: 41.2 bits (95), Expect = 4.1e-04
Identity = 27/63 (42.86%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 35  SKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVD------KSKIDTNEPNKEEIR 92
           +KLK+ A V+E  S+  AH+AHLTQD LHKVE+    +D      K  ID    N E  +
Sbjct: 160 NKLKQVALVLEHISEVAAHEAHLTQDFLHKVEKVTQDIDDLEAMIKPLIDKKVANAETKQ 219

[Close]

BLAST of CsGy7G005500.1 vs. TrEMBL
Match: tr|A0A0A0K622|A0A0A0K622_CUCSA (Alkyl transferase OS=Cucumis sativus OX=3659 GN=Csa_7G064570 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 28  CEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEI 87
           CEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEI
Sbjct: 416 CEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEI 475

Query: 88  RQIRANK 95
           RQIRANK
Sbjct: 476 RQIRANK 482

[Close]

BLAST of CsGy7G005500.1 vs. TrEMBL
Match: tr|A0A1S3C099|A0A1S3C099_CUCME (uncharacterized protein LOC103495399 OS=Cucumis melo OX=3656 GN=LOC103495399 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.2e-19
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 29  EKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKE 86
           EKLPEKSKLKEAA+VVE+YSKEIAHDAHLTQDILHKVEEWK K+DKSKID NE NKE
Sbjct: 150 EKLPEKSKLKEAAQVVENYSKEIAHDAHLTQDILHKVEEWKQKIDKSKIDMNESNKE 206

[Close]

BLAST of CsGy7G005500.1 vs. TrEMBL
Match: tr|A0A2I4HBF5|A0A2I4HBF5_9ROSI (uncharacterized protein LOC109015438 OS=Juglans regia OX=51240 GN=LOC109015438 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.9e-04
Identity = 48/69 (69.57%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1  MVIEEAENVXXXXXXXXXXXXXXXXXXCEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQD 60
          MV+EE E  XXXXXXXXXXXXXXXX   EKLPE SKLKEAA +VE  SKE AHDA LT D
Sbjct: 1  MVVEEVEIXXXXXXXXXXXXXXXXXEFAEKLPEDSKLKEAALLVERVSKEAAHDAQLTTD 60

Query: 61 ILHKVEEWK 70
           +HK +  K
Sbjct: 61 FIHKADVLK 69

[Close]

BLAST of CsGy7G005500.1 vs. TrEMBL
Match: tr|A0A2P5EPA1|A0A2P5EPA1_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_168240 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.0e-04
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 1   MVIEEAENVXXXXXXXXXXXXXXXXXXCEKLPEKSKLKEAAEVVESYSKEIAHDAHLTQD 60
           +V+E+ ENV  XXXX             +KLP+  +LKE A  VE  SK+ AHDA LT+D
Sbjct: 121 IVVEDVENVAEXXXXLAIVAENVSSEVADKLPDNGRLKETALFVERVSKKAAHDAQLTKD 180

Query: 61  ILHKVEEWK 70
            +HKV+E K
Sbjct: 181 FIHKVDELK 189

[Close]

BLAST of CsGy7G005500.1 vs. TrEMBL
Match: tr|A0A2I4HI61|A0A2I4HI61_9ROSI (uncharacterized protein LOC109018125 OS=Juglans regia OX=51240 GN=LOC109018125 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.0e-04
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 29  EKLPEKSKLKEAAEVVESYSKEIAHDAHLTQDILHKVEEWKLKVDKSKIDTNEPNKEEIR 88
           +KLPE  KLKEAA  VE  SKE AHDAHLT+D +HKV+   LK D   +     N ++I 
Sbjct: 165 DKLPENGKLKEAALFVERVSKEAAHDAHLTKDFIHKVD--ALKEDLEALLVEPMNIDQIA 224

Query: 89  QIRANK 95
           +++ ++
Sbjct: 225 KLQGSE 228

The following BLAST results are available for this feature:

BLAST of CsGy7G005500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43747.1	2.2e-27	100.00	hypothetical protein Csa_7G064570 [Cucumis sativus]	[more]
XP_011658811.1	2.2e-27	100.00	PREDICTED: uncharacterized protein LOC105436091 [Cucumis sativus]	[more]
XP_008455165.1	1.1e-18	89.47	PREDICTED: uncharacterized protein LOC103495399 [Cucumis melo]	[more]
XP_022141966.1	1.2e-12	83.67	uncharacterized protein LOC111012212 [Momordica charantia]	[more]
XP_022972002.1	4.4e-12	67.21	uncharacterized protein LOC111470651 [Cucurbita maxima]	[more]

BLAST of CsGy7G005500.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14095.1	4.1e-04	42.86	unknown protein	[more]

BLAST of CsGy7G005500.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy7G005500.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K622\|A0A0A0K622_CUCSA	1.4e-27	100.00	Alkyl transferase OS=Cucumis sativus OX=3659 GN=Csa_7G064570 PE=3 SV=1	[more]
tr\|A0A1S3C099\|A0A1S3C099_CUCME	7.2e-19	89.47	uncharacterized protein LOC103495399 OS=Cucumis melo OX=3656 GN=LOC103495399 PE=...	[more]
tr\|A0A2I4HBF5\|A0A2I4HBF5_9ROSI	2.9e-04	69.57	uncharacterized protein LOC109015438 OS=Juglans regia OX=51240 GN=LOC109015438 P...	[more]
tr\|A0A2P5EPA1\|A0A2P5EPA1_9ROSA	5.0e-04	46.38	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_168240 PE=4 S...	[more]
tr\|A0A2I4HI61\|A0A2I4HI61_9ROSI	5.0e-04	46.97	uncharacterized protein LOC109018125 OS=Juglans regia OX=51240 GN=LOC109018125 P...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy7G005500	CsGy7G005500	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G005500.1.CDS.2	CsGy7G005500.1.CDS.2	CDS
CsGy7G005500.1.CDS.1	CsGy7G005500.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G005500.1.exon.2	CsGy7G005500.1.exon.2	exon
CsGy7G005500.1.exon.1	CsGy7G005500.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy7G005500.1	CsGy7G005500.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 3..23
None	No IPR available	PANTHER	PTHR33735:SF4	EXPRESSED PROTEIN	coord: 1..73
None	No IPR available	PANTHER	PTHR33735	FAMILY NOT NAMED	coord: 1..73