CsGy6G029600 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G029600
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	EPIDERMAL PATTERNING FACTOR-like protein 1
Location	Chr6 : 28167389 .. 28167910 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTACTTTACTCCTTTGCTTTGTTGGATCCATGGGTTCCTGGTATGAATGACTTGATGACTACCATGAATTTGGCTACTGTTTGGGCCACCTCATTACTTATTGTGCTTCTGCATCTTCTTCTTCTTCTCTCCGCCTCTTCTCCACCCAGAGTATGCTGTCTCTCATTTTCTCTCTCTCTCTTCCAGGGCTTCCTATATCATTCCATGTTTAATATTTCTATTAGTAACTCTATTTCCTTGTTTTTTTTTTTTGTTTGATGGTTTCATCAGGGTATGTTTTTTGAAGACAAAACCAGGCTTGGATCCACCCCACCAAGCTGCCATAACAAGTGCAACGAGTGCCACCCATGCATGGCTGTGCAAGTGCCTAGCATGCCCGGCCGCGCCAGCCGGTTGGACTCACCTTCGGCTTTGCCAATGAGATTTTTTGACTCGTCCTCTCAAGGGAACAGATACTCATTTTACAAGCCATTGGGTTGGAAATGCCGCTGTGGAAACCACTTCTTCAATCCGTAG

mRNA sequence

ATGATTTTACTTTACTCCTTTGCTTTGTTGGATCCATGGGTTCCTGGTATGAATGACTTGATGACTACCATGAATTTGGCTACTGTTTGGGCCACCTCATTACTTATTGTGCTTCTGCATCTTCTTCTTCTTCTCTCCGCCTCTTCTCCACCCAGAGGTATGTTTTTTGAAGACAAAACCAGGCTTGGATCCACCCCACCAAGCTGCCATAACAAGTGCAACGAGTGCCACCCATGCATGGCTGTGCAAGTGCCTAGCATGCCCGGCCGCGCCAGCCGGTTGGACTCACCTTCGGCTTTGCCAATGAGATTTTTTGACTCGTCCTCTCAAGGGAACAGATACTCATTTTACAAGCCATTGGGTTGGAAATGCCGCTGTGGAAACCACTTCTTCAATCCGTAG

Coding sequence (CDS)

ATGATTTTACTTTACTCCTTTGCTTTGTTGGATCCATGGGTTCCTGGTATGAATGACTTGATGACTACCATGAATTTGGCTACTGTTTGGGCCACCTCATTACTTATTGTGCTTCTGCATCTTCTTCTTCTTCTCTCCGCCTCTTCTCCACCCAGAGGTATGTTTTTTGAAGACAAAACCAGGCTTGGATCCACCCCACCAAGCTGCCATAACAAGTGCAACGAGTGCCACCCATGCATGGCTGTGCAAGTGCCTAGCATGCCCGGCCGCGCCAGCCGGTTGGACTCACCTTCGGCTTTGCCAATGAGATTTTTTGACTCGTCCTCTCAAGGGAACAGATACTCATTTTACAAGCCATTGGGTTGGAAATGCCGCTGTGGAAACCACTTCTTCAATCCGTAG

Protein sequence

MILLYSFALLDPWVPGMNDLMTTMNLATVWATSLLIVLLHLLLLLSASSPPRGMFFEDKTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRASRLDSPSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP

Homology

[Close]

BLAST of CsGy6G029600 vs. NCBI nr
Match: XP_008440584.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 1.2e-58
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 4   LYSFALLDPWVPGMNDLMTTMNLATVWATSLXXXXXXXXXXXXXXXXXRGMFFEDKTRLG 63
           L SFALLDPWVPGMNDLMTTMNLATVWATSLXXXXXXXXXXXXXXXXXRG+FFEDKTRLG
Sbjct: 5   LLSFALLDPWVPGMNDLMTTMNLATVWATSLXXXXXXXXXXXXXXXXXRGIFFEDKTRLG 64

Query: 64  STPPSCHNKCNECHPCMAVQVPSMPGRASRLDSPSALPMRFFDSSSQGNRYSFYKPLGWK 123
           STPPSCHNKCNECHPCMAVQVPSMPGRASRLDS SALPMRFFDSSSQGNRYSFYKPLGWK
Sbjct: 65  STPPSCHNKCNECHPCMAVQVPSMPGRASRLDSSSALPMRFFDSSSQGNRYSFYKPLGWK 124

Query: 124 CRCGNHFFNP 134
           CRCGNHFFNP
Sbjct: 125 CRCGNHFFNP 134

[Close]

BLAST of CsGy6G029600 vs. NCBI nr
Match: KGN48738.1 (hypothetical protein Csa_6G499820 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 1.6e-52
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 17  MNDLMTTMNLATVWATSLXXXXXXXXXXXXXXXXXRGMFFEDKTRLGSTPPSCHNKCNEC 76
           MNDLMTTMNLATVWATSLXXXXXXXXXXXXXXXXXRGMFFEDKTRLGSTPPSCHNKCNEC
Sbjct: 1   MNDLMTTMNLATVWATSLXXXXXXXXXXXXXXXXXRGMFFEDKTRLGSTPPSCHNKCNEC 60

Query: 77  HPCMAVQVPSMPGRASRLDSPSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP 134
           HPCMAVQVPSMPGRASRLDSPSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP
Sbjct: 61  HPCMAVQVPSMPGRASRLDSPSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP 117

[Close]

BLAST of CsGy6G029600 vs. NCBI nr
Match: XP_010646934.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Vitis vinifera])

HSP 1 Score: 134.0 bits (336), Expect = 3.6e-28
Identity = 59/85 (69.41%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 52  RGMFFEDKTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRAS-RLDSPSALPMRFFDS--S 111
           RG+ FE+KTRLGSTPPSCHNKCNECHPCMAVQVP++P  +  RL   + +PM FF+S  S
Sbjct: 39  RGLLFEEKTRLGSTPPSCHNKCNECHPCMAVQVPTLPSHSGPRLGLTATVPMEFFESSPS 98

Query: 112 SQGNRYSFYKPLGWKCRCGNHFFNP 134
           +  NRYS YKPLGWKC CG+HFFNP
Sbjct: 99  TAANRYSNYKPLGWKCHCGDHFFNP 123

[Close]

BLAST of CsGy6G029600 vs. NCBI nr
Match: XP_021824047.1 (EPIDERMAL PATTERNING FACTOR-like protein 1 [Prunus avium])

HSP 1 Score: 127.1 bits (318), Expect = 4.5e-26
Identity = 58/86 (67.44%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 52  RGMFFEDKTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRASRLDSPSA--LPMRFFDSSS 111
           RG+ FE+KTRLGSTPPSCHNKCN+CHPCMAVQVP++P    R++   A   PM FFD S 
Sbjct: 35  RGLLFEEKTRLGSTPPSCHNKCNQCHPCMAVQVPTIPSH-DRVEPGMARSFPMMFFDPSH 94

Query: 112 QG--NRYSFYKPLGWKCRCGNHFFNP 134
            G  N+YS YKPLGWKC CG+HFFNP
Sbjct: 95  PGSNNKYSNYKPLGWKCHCGDHFFNP 119

[Close]

BLAST of CsGy6G029600 vs. NCBI nr
Match: PQQ05569.1 (EPIDERMAL PATTERNING FACTOR-like protein 1 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 127.1 bits (318), Expect = 4.5e-26
Identity = 57/86 (66.28%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 52  RGMFFEDKTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRASRLDS--PSALPMRFFDSS- 111
           RG+ FE+KTRLGSTPPSCHNKCN+CHPCMAVQVP++P    R++     + PM FFD S 
Sbjct: 35  RGLLFEEKTRLGSTPPSCHNKCNQCHPCMAVQVPTIPSH-DRVEQGMTGSFPMMFFDPSH 94

Query: 112 -SQGNRYSFYKPLGWKCRCGNHFFNP 134
            S  N+YS YKPLGWKC CG+HFFNP
Sbjct: 95  PSSNNKYSNYKPLGWKCHCGDHFFNP 119

[Close]

BLAST of CsGy6G029600 vs. TAIR10
Match: AT5G10310.1 (unknown protein)

HSP 1 Score: 98.6 bits (244), Expect = 3.1e-21
Identity = 45/80 (56.25%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 57  EDKTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRA--SRLDSPSALPMRFFDS-SSQGNR 116
           EDK RLGSTPPSCHN+CN CHPCMA+QVP++P R+  +R++  S   +R   S ++  ++
Sbjct: 43  EDKARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQ 102

Query: 117 YSFYKPLGWKCRCGNHFFNP 134
           YS YKP+GWKC C  HF+NP
Sbjct: 103 YSNYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of CsGy6G029600 vs. TAIR10
Match: AT4G37810.1 (unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-08
Identity = 29/78 (37.18%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 62  LGSTPPSCHN-KCNECHPCMAVQVPSMPGRASRLDSP-----SALPMRFFDSSSQGNRYS 121
           +GS PP C   +C  C  C A+QVP+ P   ++L SP     S+         ++G+  +
Sbjct: 53  IGSRPPRCERVRCRSCGHCEAIQVPTNP--QTKLHSPLTTSSSSSSETIHLDYTRGDDST 112

Query: 122 FYKPLGWKCRCGNHFFNP 134
            YKP+ WKC+CGN  +NP
Sbjct: 113 NYKPMSWKCKCGNSIYNP 128

[Close]

BLAST of CsGy6G029600 vs. TAIR10
Match: AT2G30370.1 (allergen-related)

HSP 1 Score: 51.2 bits (121), Expect = 5.6e-07
Identity = 24/72 (33.33%), Postives = 30/72 (41.67%), Query Frame = 0


Query: 62  LGSTPPSCHNKCNECHPCMAVQVPSMPGRASRLDSPSALPMRFFDSSSQGNRYSFYKPLG 121
           LGS+PP C +KC  C PC  V VP  PG     +                     Y P  
Sbjct: 180 LGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAE---------------------YYPEA 230

Query: 122 WKCRCGNHFFNP 134
           W+C+CGN  + P
Sbjct: 240 WRCKCGNKLYMP 230

[Close]

BLAST of CsGy6G029600 vs. Swiss-Prot
Match: sp|Q9LFT5|EPFL1_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.6e-20
Identity = 45/80 (56.25%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 57  EDKTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRA--SRLDSPSALPMRFFDS-SSQGNR 116
           EDK RLGSTPPSCHN+CN CHPCMA+QVP++P R+  +R++  S   +R   S ++  ++
Sbjct: 43  EDKARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQ 102

Query: 117 YSFYKPLGWKCRCGNHFFNP 134
           YS YKP+GWKC C  HF+NP
Sbjct: 103 YSNYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of CsGy6G029600 vs. Swiss-Prot
Match: sp|Q9T068|EPFL2_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EPFL2 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-07
Identity = 29/78 (37.18%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 62  LGSTPPSCHN-KCNECHPCMAVQVPSMPGRASRLDSP-----SALPMRFFDSSSQGNRYS 121
           +GS PP C   +C  C  C A+QVP+ P   ++L SP     S+         ++G+  +
Sbjct: 53  IGSRPPRCERVRCRSCGHCEAIQVPTNP--QTKLHSPLTTSSSSSSETIHLDYTRGDDST 112

Query: 122 FYKPLGWKCRCGNHFFNP 134
            YKP+ WKC+CGN  +NP
Sbjct: 113 NYKPMSWKCKCGNSIYNP 128

[Close]

BLAST of CsGy6G029600 vs. Swiss-Prot
Match: sp|Q1PEY6|EPFL6_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.0e-05
Identity = 24/72 (33.33%), Postives = 30/72 (41.67%), Query Frame = 0


Query: 62  LGSTPPSCHNKCNECHPCMAVQVPSMPGRASRLDSPSALPMRFFDSSSQGNRYSFYKPLG 121
           LGS+PP C +KC  C PC  V VP  PG     +                     Y P  
Sbjct: 106 LGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAE---------------------YYPEA 156

Query: 122 WKCRCGNHFFNP 134
           W+C+CGN  + P
Sbjct: 166 WRCKCGNKLYMP 156

[Close]

BLAST of CsGy6G029600 vs. TrEMBL
Match: tr|A0A1S3B112|A0A1S3B112_CUCME (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103484960 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 7.7e-59
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 4   LYSFALLDPWVPGMNDLMTTMNLATVWATSLXXXXXXXXXXXXXXXXXRGMFFEDKTRLG 63
           L SFALLDPWVPGMNDLMTTMNLATVWATSLXXXXXXXXXXXXXXXXXRG+FFEDKTRLG
Sbjct: 5   LLSFALLDPWVPGMNDLMTTMNLATVWATSLXXXXXXXXXXXXXXXXXRGIFFEDKTRLG 64

Query: 64  STPPSCHNKCNECHPCMAVQVPSMPGRASRLDSPSALPMRFFDSSSQGNRYSFYKPLGWK 123
           STPPSCHNKCNECHPCMAVQVPSMPGRASRLDS SALPMRFFDSSSQGNRYSFYKPLGWK
Sbjct: 65  STPPSCHNKCNECHPCMAVQVPSMPGRASRLDSSSALPMRFFDSSSQGNRYSFYKPLGWK 124

Query: 124 CRCGNHFFNP 134
           CRCGNHFFNP
Sbjct: 125 CRCGNHFFNP 134

[Close]

BLAST of CsGy6G029600 vs. TrEMBL
Match: tr|A0A0A0KGR1|A0A0A0KGR1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499820 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-52
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 17  MNDLMTTMNLATVWATSLXXXXXXXXXXXXXXXXXRGMFFEDKTRLGSTPPSCHNKCNEC 76
           MNDLMTTMNLATVWATSLXXXXXXXXXXXXXXXXXRGMFFEDKTRLGSTPPSCHNKCNEC
Sbjct: 1   MNDLMTTMNLATVWATSLXXXXXXXXXXXXXXXXXRGMFFEDKTRLGSTPPSCHNKCNEC 60

Query: 77  HPCMAVQVPSMPGRASRLDSPSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP 134
           HPCMAVQVPSMPGRASRLDSPSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP
Sbjct: 61  HPCMAVQVPSMPGRASRLDSPSALPMRFFDSSSQGNRYSFYKPLGWKCRCGNHFFNP 117

[Close]

BLAST of CsGy6G029600 vs. TrEMBL
Match: tr|F6HJL0|F6HJL0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0391g00030 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.4e-28
Identity = 59/85 (69.41%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 52  RGMFFEDKTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRAS-RLDSPSALPMRFFDS--S 111
           RG+ FE+KTRLGSTPPSCHNKCNECHPCMAVQVP++P  +  RL   + +PM FF+S  S
Sbjct: 39  RGLLFEEKTRLGSTPPSCHNKCNECHPCMAVQVPTLPSHSGPRLGLTATVPMEFFESSPS 98

Query: 112 SQGNRYSFYKPLGWKCRCGNHFFNP 134
           +  NRYS YKPLGWKC CG+HFFNP
Sbjct: 99  TAANRYSNYKPLGWKCHCGDHFFNP 123

[Close]

BLAST of CsGy6G029600 vs. TrEMBL
Match: tr|A0A1S3UQ46|A0A1S3UQ46_VIGRR (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106767707 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-25
Identity = 56/85 (65.88%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 52  RGMFFEDKTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRASR---LDSPSALPMRFFDSS 111
           R + FE+K RLGS PPSCHNKCN+CHPCMAVQVP++P   S    L   SA+   F  SS
Sbjct: 41  RELLFEEKNRLGSIPPSCHNKCNDCHPCMAVQVPTLPSHDSNPPDLTKTSAMATFFNPSS 100

Query: 112 SQGNRYSFYKPLGWKCRCGNHFFNP 134
            QGNRYS YKPLGWKC CG+HFFNP
Sbjct: 101 PQGNRYSNYKPLGWKCHCGDHFFNP 125

[Close]

BLAST of CsGy6G029600 vs. TrEMBL
Match: tr|A0A2P6RQE0|A0A2P6RQE0_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0112781 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.9e-25
Identity = 57/86 (66.28%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 52  RGMFFEDKTRLGSTPPSCHNKCNECHPCMAVQVPSMPGRASRL----DSPSALPMRFFDS 111
           RG+ F +K RLGSTPPSCHNKCN+CHPCMAVQVP+MP R  R+     +  A PM  FD 
Sbjct: 47  RGLLFAEKARLGSTPPSCHNKCNQCHPCMAVQVPTMPSR-DRVRPVGKTRPAKPMVLFDP 106

Query: 112 SSQGNRYSFYKPLGWKCRCGNHFFNP 134
           S   NRYS YKPLGWKC CG+HFFNP
Sbjct: 107 SHLDNRYSNYKPLGWKCHCGDHFFNP 131

The following BLAST results are available for this feature:

BLAST of CsGy6G029600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440584.1	1.2e-58	97.69	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo]	[more]
KGN48738.1	1.6e-52	100.00	hypothetical protein Csa_6G499820 [Cucumis sativus]	[more]
XP_010646934.1	3.6e-28	69.41	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Vitis vinifera]	[more]
XP_021824047.1	4.5e-26	67.44	EPIDERMAL PATTERNING FACTOR-like protein 1 [Prunus avium]	[more]
PQQ05569.1	4.5e-26	66.28	EPIDERMAL PATTERNING FACTOR-like protein 1 [Prunus yedoensis var. nudiflora]	[more]

BLAST of CsGy6G029600 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10310.1	3.1e-21	56.25	unknown protein	[more]
AT4G37810.1	1.0e-08	37.18	unknown protein	[more]
AT2G30370.1	5.6e-07	33.33	allergen-related	[more]

BLAST of CsGy6G029600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LFT5\|EPFL1_ARATH	5.6e-20	56.25	EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
sp\|Q9T068\|EPFL2_ARATH	1.9e-07	37.18	EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
sp\|Q1PEY6\|EPFL6_ARATH	1.0e-05	33.33	EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]

BLAST of CsGy6G029600 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B112\|A0A1S3B112_CUCME	7.7e-59	97.69	EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Cucumis melo OX=3656 GN=LOC1034849...	[more]
tr\|A0A0A0KGR1\|A0A0A0KGR1_CUCSA	1.1e-52	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499820 PE=4 SV=1	[more]
tr\|F6HJL0\|F6HJL0_VITVI	2.4e-28	69.41	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0391g00030 PE=4 SV=...	[more]
tr\|A0A1S3UQ46\|A0A1S3UQ46_VIGRR	1.5e-25	65.88	EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Vigna radiata var. radiata OX=3916...	[more]
tr\|A0A2P6RQE0\|A0A2P6RQE0_ROSCH	1.9e-25	66.28	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0112781 PE=4...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G029600.1	CsGy6G029600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 61..133 e-value: 1.6E-22 score: 79.1
None	No IPR available	PANTHER	PTHR33109:SF3	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 1	coord: 25..133
None	No IPR available	PANTHER	PTHR33109	FAMILY NOT NAMED	coord: 25..133

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G029600	Cla014135	Watermelon (97103) v1	cgybwmB468
CsGy6G029600	Csa6G499820	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G029600	MELO3C007746	Melon (DHL92) v3.5.1	cgybmeB444
CsGy6G029600	ClCG01G018670	Watermelon (Charleston Gray)	cgybwcgB399
CsGy6G029600	CSPI06G30130	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G029600	CmaCh03G008110	Cucurbita maxima (Rimu)	cgybcmaB831
CsGy6G029600	CmaCh07G005490	Cucurbita maxima (Rimu)	cgybcmaB861
CsGy6G029600	CmoCh07G005530	Cucurbita moschata (Rifu)	cgybcmoB843
CsGy6G029600	CmoCh03G008570	Cucurbita moschata (Rifu)	cgybcmoB811
CsGy6G029600	Lsi01G007810	Bottle gourd (USVL1VR-Ls)	cgyblsiB398
CsGy6G029600	MELO3C007746.2	Melon (DHL92) v3.6.1	cgybmedB440
CsGy6G029600	CsaV3_6G045330	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G029600	Cla97C01G018060	Watermelon (97103) v2	cgybwmbB394
CsGy6G029600	Bhi03G000893	Wax gourd	cgybwgoB592
CsGy6G029600	Carg00704	Silver-seed gourd	carcgybB0418

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G029600	Cucumber (Chinese Long) v3	cgybcucB263
CsGy6G029600	Cucumber (Chinese Long) v3	cgybcucB278
CsGy6G029600	Watermelon (97103) v2	cgybwmbB404
CsGy6G029600	Watermelon (97103) v2	cgybwmbB478
CsGy6G029600	Wax gourd	cgybwgoB564
CsGy6G029600	Wax gourd	cgybwgoB615
CsGy6G029600	Cucumber (Gy14) v2	cgybcgybB065
CsGy6G029600	Cucumber (Gy14) v2	cgybcgybB110
CsGy6G029600	Cucurbita maxima (Rimu)	cgybcmaB722
CsGy6G029600	Cucurbita maxima (Rimu)	cgybcmaB849
CsGy6G029600	Cucurbita moschata (Rifu)	cgybcmoB706
CsGy6G029600	Cucurbita moschata (Rifu)	cgybcmoB824
CsGy6G029600	Cucurbita moschata (Rifu)	cgybcmoB829
CsGy6G029600	Cucurbita pepo (Zucchini)	cgybcpeB710
CsGy6G029600	Cucurbita pepo (Zucchini)	cgybcpeB718
CsGy6G029600	Cucurbita pepo (Zucchini)	cgybcpeB808
CsGy6G029600	Cucurbita pepo (Zucchini)	cgybcpeB810
CsGy6G029600	Cucurbita pepo (Zucchini)	cgybcpeB883
CsGy6G029600	Cucumber (Chinese Long) v2	cgybcuB250
CsGy6G029600	Bottle gourd (USVL1VR-Ls)	cgyblsiB423
CsGy6G029600	Bottle gourd (USVL1VR-Ls)	cgyblsiB449
CsGy6G029600	Melon (DHL92) v3.5.1	cgybmeB413
CsGy6G029600	Melon (DHL92) v3.6.1	cgybmedB411
CsGy6G029600	Melon (DHL92) v3.6.1	cgybmedB419
CsGy6G029600	Watermelon (Charleston Gray)	cgybwcgB398
CsGy6G029600	Watermelon (Charleston Gray)	cgybwcgB470
CsGy6G029600	Watermelon (97103) v1	cgybwmB443
CsGy6G029600	Watermelon (97103) v1	cgybwmB499
CsGy6G029600	Wild cucumber (PI 183967)	cgybcpiB258
CsGy6G029600	Silver-seed gourd	carcgybB0063
CsGy6G029600	Silver-seed gourd	carcgybB0648
CsGy6G029600	Silver-seed gourd	carcgybB0753
CsGy6G029600	Silver-seed gourd	carcgybB0932