CsGy5G018720 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G018720
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	ubiquitin-conjugating enzyme E2 variant 1A-like
Location	Chr5 : 25157533 .. 25164745 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGGGTTTAAAAACGAGATTAAAGTCAAAATCGAATTTAATATATTTTGAAAAAAAAGAAAAGAAAAAACAATTTAATTTAAGAGTGGACGGAATTATGAATGAAAGTTAAGATAAAATGTGTGCCACCGCTTAAGCCACAGTGAGTGGTTAAGATCAATTGAACGGTTGTGATGTGGAGGCGAAAGATTGATTATTACTCAACCTTTTGGCCTCTTTTCTCAAAGCTTTTGCTTATGAACAGCGGTTGACTGTTTTATCTCTCCCATCTATTTTTTATGACACGCTTTCTCTCTCTACACTTGCTTCTTTAACTTTCGGAACCCTAAACTCACTACCCCGAGCTTCAAGCAATGGGTGATGAAGCCGCGAAGGTTGTTGGTAAGTCTTTCAAACGCCTCTAATTTCAATTGCACAGTCCGACATTTTCACTCTTTTTAGGTTTTTTTGTTCTTTTTTTTTTTTTTATGTCAATTCTGCTTCTTACAATTATTTCTTCTTCTTCTTCGGGATGTTGGAGTTTTTTTCTCTTTGGTAATCAACTTCTATTTTGGTTTTTCCTCCTATAAGTGAGTGTGATGGAAGTGGAAACTATGTTTGTTAGTTCAGATTTTGTTTTATCTTGCTGGGTTGCTAATGTTGTGGTTAGGAATGTTTGGGTATATCTTTGTTTCGTGGTATGGTTTACTCCGAATTGAAGATGGTGTGGTCATTTTGGTTCTGCAGGTTGTGTTGTACTCACTGTTTCCTTAATCCTGGACGTCTTACTTTTTGCTTTGTATTATGTTGTATGGGTTATAACAGATAAACAGATAATTTGAAGGAGAATCTGATTGTTTGATTTCCTTTACTGTCTTATTCTTGGTTTCTCATTAAAAATTGGTGTTTTATGTTTTTTTTCTGACAATCTGTAACTTATTGAAAAGATGTCAATTAACCTATGAAAGATCGTCATGGCTGGATGACAGTAAATGAAGGTGTTATATGAGGATTGCTGTGTGAGCAGCAGAGACTCGTGGAAATGTTGATTATTTGTGACATTGGACTTCTGCTTATGGATTTAATCATACAGCTTTACTTCTTCGAGTGATTGTATTCAACTACAGTTACAATGTTTGAAATTCCTTGGGTTCATTCACTTGCTGGAGTTTTGCGCTGACTTACGATCTTTTCAATCTAATTTTGCTATGGATTTCTTACTCGTTAGATAAGATGTAGTTTCTGAAGCAATCTCATAAGAAGCCGGATGGAGGGTATATGTTGTTATATTAATAAGTTAGATTGATTTAGCAGAGTGGCTTGGTTTGATCTGACAGGAGATAATCAAATCAAGAGGGTGTTAATATATTTTACTTTTTGTTATAATCAAATCAAGTGGGTGTTAATATATTGTACTTTTTGCTATAACGGTCATATTGTTGACTATAATCACAAAATGAAACGGCCTGTATTTATTATTCTGATGATGCTGGCATGTGAAGCATATAGAAAATACTTGTTTGTTCCACCTTAAGCTTAGAAGTAAGAGCTTAAACAATTATTTATGAATTATGAGCCCTTTATCCTCTTCGTTTTCAGAAGTTCATTCTCTTTGTTTCCAGAGTTGGTTTTATGTTTAAGAACATTACTCAAAATTTTGTTTTCTTTTGTTCCAATAGTAAATAAATAAAATAGAATAGAATAAAATAAAATAAGACTCAGACAAACCATGACTTACTCCTTGGTTATTGACTTGCTGGTACTATCTTAATGAAAAGTTTGTACATTGCACTATGAACTCTAAATATAACGCCCTTATACGCTTTTATTTTATCTCAATGAAAGTTGTTTCTAAAAAAATCTCTAATGTTAACAATATTTTCATTTTGTGCAGTTCCTCGAAATTTCAGATTACTGGAAGAACTTGAAAGAGGTGAAAAAGGAATTGGAGATGGAACTGTGAGTTATGGAATGGATGATGCTGATGATATCTATATGGCGTCTTGGACGGGAACTATCATTGGGCCTCCTAACGTAATTTCATTTTTCATCCCTTTTACCTCTTTTCTTATGGTTTCTGATGACATTTGAATCAGCCTTTATATACGTTGATATGGATAGTGACAAACAATGATGAAAATATTTTTTCCTATGTAATTCCCTTTTCTAATTTTTTGTGTTTTGTTTTCTGTTGTTCTTTTAGTTCCCTTTGGTTGAGGCCTTCTTTTTTCTGTATGGCTCTTTTTGTTTTTCCCTGTACTTTTTTTTTATTCTGAAATTAGTTCTCATTTGAGCATAATCTTGGTTATGTGTGATTAGACCACTGGAGATCTGCAGATTAAGAAAAGCTTCATGCCATTTTTAACATTTTAAATTTTGAATAGGATTATTACTTCACCACAGGAAGGTTTTAGCATGTGTGTAGTTAGCCTACATTCTTGTTATTACCATGCTAAAGGAGTAAAATTTTGGAGTTGATACACCTGATCTCATCTGATCTTATTTATGTTCTTGGGATTTTTTAAACGATCTGAATTGATTTTCTTCTGAGTACATTATTCTCTGGTCTTTGTGTTTCCTCTGTTCTTTTACTGGGTAAATTCTATCTTCAGTTTCTACCTCCTAAAAACTCCCAAAAAGTGCTCAGTTTTGATTATTAATGTAGTTCAATTACTAATATCCTGATTGTCTTTACCTAAAAATTGACAATTAAAGAAAACTGGTAAGTCTGATTTCTGCTCTCTTCTTGATAAAATGACTGTCTTCAGCATCACAGTTCCATTGCAACGGTGGCAATTGATGTATTCTTCTTTATTGTTATTATTGGGAGGGGATGAAAGAAATTTGTAAGACCCCTAGTGATAGAAATAGTAGAGTTCTTAGGAGAATATTAATATGGTTGTTAGTTGGGGCATATTAGTAAATAGTTAGGAAGTAGGCTAGGTTATTTTGCTATAAATAGGAGGTGAGGGGATTAGGGAAAGATGTGAAGTATTTTGTAGTAGAATTTCCTTGTGTGGGAATTTGGGAGTCTGGCCCTCTCAAAAGGCTAGGAGTTATATTGTTATTTATTCTTGTGATATTATAGAATATATTTCAATATATTTCCAACTTGAATTTTCTTGGGTTGCTTATGTGTTCTTGAGTATCTCTTGTTAGGTTACATTCTAACAAAATTGTAAATTGAATCACTGCCTTCTTGCTTTGCAGACTGTTCATGAAGGACGCATCTATCAACTCAAGTTATTCTGTGGACAGGATTATCCTGATAATCCTCCAAATGTTAGATTTCAAACTCGGATTAATATGACCTGTGTCAATTCAGAAACTGGGGTGGTATGTGATGATTTTGTGATGCACTTTTTCTATGATGCGACTGAAAATAAATTGACGGCCCATCTGTATGACTAGGTGGAACCAAGCCTTTTCCCCATGCTTGCTAATTGGCAAAGGGAGCATACAATGGAGGATATATTAATGCAATTGAAGAAAGAAATGACTTCTCCCCAGAACAGGAGACTAAGTCAGCCTTCTGAAGGTGAGTTATTCACCTCTCATCATGGAGAGCATATCCCTCTCTTTCGAATATAAACCATATTTAATATATTTGCATGCTTCTTTAATGATAAACTATCTATTAAAAAAAACAAAACTGTATTTGAGGAAAGATGGATATACTATGTCCAGTCAAGAAGATTACAACCAATAAGGCTATCCAGTCAAGGAGGTTCCAAGATGACTCTTCATTTGTTTAAAACAAAAAAGATCTGCATGCAAAATTGATTGGAGCTAGTACTCCAATTTGTTGCTAGAAATCTAGGTATATCCCATAACATCTAGGTTCCTGCATATTCTCCTCAAAACCGTTCGACTATTTTTTGCTCACGTCTCCTACTAGATCAAATTCATGGCATTAATCTTTTAACCATCAGTTTAATCATTGAAAGTATGGCTTCAAAGGAGTTGGAAAACGGCTTGTTTCTATCTTGAGGAAGCACAATTGCCAATCCAGAGCTATTGAGCAATCTACAGGAGCATGATGAATTGGAAGTGGAAGAAAATAAATTATGGTCATGGTCTCCAAAACGATATGCATAATGCATCAGTTGACATATAAAGCAAAGCTTGGGAACTCCATCCTAATTCTGTTTCTAGTGTAAATAAGCACAGGCACCCGAGTGCAAAAGAAAAACTTGGACTTTTTTAGGGGTTTTGGCATTCGGTTTGCAATTGAGGGTCAGGTTCATTTATATTGCTAGGTACAAATGTAAAAGCTGATTGAAAAGACATCCGAGTGCATTGGATTGACATATCCAAGGTTCAACTCCACATAACTGGTGTTGGGTTAAGTTATAAAAAGTAGCCCATTCACGAGCCTGTGCTTCAAAGAGAAAGGGGTTCTTTTGAAATTGAACTTCTGGTAACCCTCATCACAAGCTATTCTGTTGGCATATGAATCGTTCTTTGGGCTATTTCAAACCGTGGAGTGCAGGGAAAATAATTGGAAATAGTTCTTCCAAGAATAAGCTTCCCAAGACTTAATTCTATCTTCTCTGACCATTTTAAGCACAAGCCTGTTTACAGAATGTGTATGGAAATATACACCCAATAACTTGGGGCGTTATAGGAACTTACAGTTTCCAGCCACTTCATCAACCCCTTTATACTAATAAAAATCTAACCCATAAGGCTTATGCCTTTGAATTTAGCCGTCATCTCCATCGCGATAACAAAAGCAATTCTGTGCTTCAGGCCACCAATACCAAGACCAGCTTTAAAAAATAATGGAGATCTCCCATCCAACCTGATGATAACCTTTTTCACTGCCGTCTCTTGTCAGAAGATGTCTTCTTCTTTTTCCTTTTCATCTTTTTTTCATCATCCTCGTAACAAGTTGCCAAGGCATATTGAATCTAGATAGCAGGTATGGGGTGTTCTTGGAAGACTGAGATTTCAGCAGTATCAATATGCTGCCTTAGAAGCAAATCACTCGTGCCATCAGACTCCTGAAAAATTATGGATTCTTCAGGCTCCCGGTGGCATACCCAAGTAAAGACAAAGGACTTCTAATTATCGAAAAGGAACTAGTGCATGTGAGAGGAATGTTCAAAGTTGGCATATTTTATGCATGATAATCCTGCTTAATTAATTTCCTTCCTACTTAATTTGTGTAATAGAGAATTATTCACCTGTGGGAGCACTGGTGTATAGGCTTGGAGCTGTGGGTGGCAGCCTAGTCCAAAATCCAGATTTTCTAGCGTCTAGGTGAAATGTTTATTAAGAAAGTGCTTCCATTATCTCCTGCTTGAGCTGGCATGGGACATCGTGAGGTCTTGTTATTATTATTTTTCTTTGGAGTGGTGGGATGGGACCGGATACCACACCACATTATAAATTTATAACAAGATCGAGAATCGAACTGAACCAATTGGTTCATTTCTGCAATACAATATCGAACTGAGTACCTATATTGAAATTGAAAATTGAACAGCCTGGTTGCCCATGTTGGTGATATATAATTAAATTTGCCTTCAACCACTAGCTTAAGCTTTTGGATGAATTGGTGGTTTAATATGGTATCAGAGCAGGTGGTCTAGGGAGGTCCTGTGTTCAAGCCCCTGCATTGTCGTTTCCTCCCCAATTAAAATCAATTTCCACTTGTTGGGCCTTTCAGATATTTCAAGCCCACAAGTGAGGGGGAGTGTTGGTGATATATAATTAAATTTGCCTTCAACCACTAGCTTAAGCTTTTGGATGAATTGGTGGTTTAATAGCCCAAACCGAAGAAAAGGCTGGATAAAAAAAAGGATTAATGTAATAGATGGAAAAAAACCAAATGCCTCATGAAAACCTTGCTGAACCATCTGGTTAGTCTTTGATTATTGGAACACATTTACGCCTACCAAACTTAAATGTCCAATATTAGCAAAAACTGTTTAAATTAGAGGATATTTATGGGGCTTTTAGTGGTGCTGCCGTGCTGGCATATCAGGGGTGACACCAGTGTCATCCATCAGGTGGGTTCATGAGATGCTCTCCTGTGATTCCATATCTGGAAGGATAAAGGATTCTTACAATCTCATCAACCATCTGTCCTTGACGGAGCTTCATATGTTGATGGTGACATCATGTGGTCGAATTTGAGAGAAATGTCCCCACAGTTGTTACTTTTGGAGTTAGTGGCTCGCTTGGGGCAGTTGGTAAAACATCTCTTTCGGGCCATGCCCTTTAGTAAATTCAAGGAGTGGTACTCTTCATACATACTTACCGTGCAGATCAAAGAAGAAATTGCTCCATTGAGCCATGCCCCTTGTATGTTCCTCAAATCTCTCCTTTTTATTCTTTCCAATTTTGATCCATCATCTCTGCAAGTGCAAATTACAGGATAATGTAAATCGCTTTCCAGCGCTGAAGTCTCAAGCTATAACTAACTATCCTAGATATCTAGTTGGTTAGAGCTCATTCGGAAATTCTTGAAGAAACATTGCCCCTCCTCACTTGCTGATAAATATGATTTCCTTTTGTAGGCAAGCTAGATGGTTGTGCTAATAACTTGCTCATGATTCTCAAATATTTTTTAAGGCCCTTTCAGTTGCTTATCTTTTTTATTTCTTTCGGTAAGAGGGTAGGGAATTGAAGTTTGAAAGGACATACTTGTTGCAGGTAATGAAGATGGAAGAATAGACCAAAAGGGGTTAGTGTTGAAATGTTGCATTCTTTAAGGTAAAAAGGCCAAATATGATAATGTAAATAAACACAGACATTTGATGTTACTATTTAAGCAACATGCTGATGTCTACACGCATATGAATGAAGTTGAGTTGTTTTCCATTAAAGTGACATGTTTGTTTGTCAGAATGTCAATTTTCTTCTATGCTATTTGCCTATAGCCCTTCCCTTTTCCAACAGCTCATCTTTGATGAGATGTGTTCCATTCAGCTGTTCTAAATAAAAAGATCAGCAAAAGAGATAAAAGTGAAACAAGACAAATACAAGTTATGTTAAATAGAAGTCAATCAAAATCTTTGTAGATTCTGTTCCCCACTAACCCTTCCTCTATTTGACTGACAGTTGTGAACAAAATTGAGAACTTTCTCCCTTTATTTATTCTATCATTGCCATTATTATCTTGAGATTGCAGATTGTTGTATCTACGTAGAATTGAATTCACTTCTTTGAACTATTTAGTTCTCTTTGGCCTTTAAATTTTCAAGTGATTTGTTTTAATTGTTT

mRNA sequence

GAAAGGGTTTAAAAACGAGATTAAAGTCAAAATCGAATTTAATATATTTTGAAAAAAAAGAAAAGAAAAAACAATTTAATTTAAGAGTGGACGGAATTATGAATGAAAGTTAAGATAAAATGTGTGCCACCGCTTAAGCCACAGTGAGTGGTTAAGATCAATTGAACGGTTGTGATGTGGAGGCGAAAGATTGATTATTACTCAACCTTTTGGCCTCTTTTCTCAAAGCTTTTGCTTATGAACAGCGGTTGACTGTTTTATCTCTCCCATCTATTTTTTATGACACGCTTTCTCTCTCTACACTTGCTTCTTTAACTTTCGGAACCCTAAACTCACTACCCCGAGCTTCAAGCAATGGGTGATGAAGCCGCGAAGGTTGTTGGAATTGGAGATGGAACTGTGAGTTATGGAATGGATGATGCTGATGATATCTATATGGCGTCTTGGACGGGAACTATCATTGGGCCTCCTAACGATTATCCTGATAATCCTCCAAATGTTAGATTTCAAACTCGGATTAATATGACCTGTGTCAATTCAGAAACTGGGGTGGTGGAACCAAGCCTTTTCCCCATGCTTGCTAATTGGCAAAGGGAGCATACAATGGAGGATATATTAATGCAATTGAAGAAAGAAATGACTTCTCCCCAGAACAGGAGACTAAGTCAGCCTTCTGAAGGTAATGAAGATGGAAGAATAGACCAAAAGGGGTTAGTGTTGAAATGTTGCATTCTTTAAGGTAAAAAGGCCAAATATGATAATGTAAATAAACACAGACATTTGATGTTACTATTTAAGCAACATGCTGATGTCTACACGCATATGAATGAAGTTGAGTTGTTTTCCATTAAAGTGACATGTTTGTTTGTCAGAATGTCAATTTTCTTCTATGCTATTTGCCTATAGCCCTTCCCTTTTCCAACAGCTCATCTTTGATGAGATGTGTTCCATTCAGCTGTTCTAAATAAAAAGATCAGCAAAAGAGATAAAAGTGAAACAAGACAAATACAAGTTATGTTAAATAGAAGTCAATCAAAATCTTTGTAGATTCTGTTCCCCACTAACCCTTCCTCTATTTGACTGACAGTTGTGAACAAAATTGAGAACTTTCTCCCTTTATTTATTCTATCATTGCCATTATTATCTTGAGATTGCAGATTGTTGTATCTACGTAGAATTGAATTCACTTCTTTGAACTATTTAGTTCTCTTTGGCCTTTAAATTTTCAAGTGATTTGTTTTAATTGTTT

Coding sequence (CDS)

ATGGGTGATGAAGCCGCGAAGGTTGTTGGAATTGGAGATGGAACTGTGAGTTATGGAATGGATGATGCTGATGATATCTATATGGCGTCTTGGACGGGAACTATCATTGGGCCTCCTAACGATTATCCTGATAATCCTCCAAATGTTAGATTTCAAACTCGGATTAATATGACCTGTGTCAATTCAGAAACTGGGGTGGTGGAACCAAGCCTTTTCCCCATGCTTGCTAATTGGCAAAGGGAGCATACAATGGAGGATATATTAATGCAATTGAAGAAAGAAATGACTTCTCCCCAGAACAGGAGACTAAGTCAGCCTTCTGAAGGTAATGAAGATGGAAGAATAGACCAAAAGGGGTTAGTGTTGAAATGTTGCATTCTTTAA

Protein sequence

MGDEAAKVVGIGDGTVSYGMDDADDIYMASWTGTIIGPPNDYPDNPPNVRFQTRINMTCVNSETGVVEPSLFPMLANWQREHTMEDILMQLKKEMTSPQNRRLSQPSEGNEDGRIDQKGLVLKCCIL

Homology

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BLAST of CsGy5G018720 vs. NCBI nr
Match: KGN51442.1 (hypothetical protein Csa_5G547590 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 1.1e-61
Identity = 127/159 (79.87%), Postives = 127/159 (79.87%), Query Frame = 0


Query: 1   MGDEAAKVV----------------GIGDGTVSYGMDDADDIYMASWTGTIIGPPN---- 60
           MGDEAAKVV                GIGDGTVSYGMDDADDIYMASWTGTIIGPPN    
Sbjct: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  ------------DYPDNPPNVRFQTRINMTCVNSETGVVEPSLFPMLANWQREHTMEDIL 120
                       DYPDNPPNVRFQTRINMTCVNSETGVVEPSLFPMLANWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNSETGVVEPSLFPMLANWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEGNEDGRIDQKGLVLKCCIL 128
           MQLKKEMTSPQNRRLSQPSEGNEDGRIDQKGLVLKCCIL
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEGNEDGRIDQKGLVLKCCIL 159

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BLAST of CsGy5G018720 vs. NCBI nr
Match: XP_011656243.1 (PREDICTED: zinc finger protein VAR3, chloroplastic [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 1.1e-61
Identity = 127/159 (79.87%), Postives = 127/159 (79.87%), Query Frame = 0


Query: 1   MGDEAAKVV----------------GIGDGTVSYGMDDADDIYMASWTGTIIGPPN---- 60
           MGDEAAKVV                GIGDGTVSYGMDDADDIYMASWTGTIIGPPN    
Sbjct: 521 MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 580

Query: 61  ------------DYPDNPPNVRFQTRINMTCVNSETGVVEPSLFPMLANWQREHTMEDIL 120
                       DYPDNPPNVRFQTRINMTCVNSETGVVEPSLFPMLANWQREHTMEDIL
Sbjct: 581 GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNSETGVVEPSLFPMLANWQREHTMEDIL 640

Query: 121 MQLKKEMTSPQNRRLSQPSEGNEDGRIDQKGLVLKCCIL 128
           MQLKKEMTSPQNRRLSQPSEGNEDGRIDQKGLVLKCCIL
Sbjct: 641 MQLKKEMTSPQNRRLSQPSEGNEDGRIDQKGLVLKCCIL 679

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BLAST of CsGy5G018720 vs. NCBI nr
Match: XP_016903717.1 (PREDICTED: uncharacterized protein LOC103483035 [Cucumis melo])

HSP 1 Score: 241.9 bits (616), Expect = 1.2e-60
Identity = 124/159 (77.99%), Postives = 126/159 (79.25%), Query Frame = 0


Query: 1   MGDEAAKVV----------------GIGDGTVSYGMDDADDIYMASWTGTIIGPPN---- 60
           MGDEAAKVV                GIGDGTVSYGMDDADDIYMASWTGTIIGPPN    
Sbjct: 565 MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 624

Query: 61  ------------DYPDNPPNVRFQTRINMTCVNSETGVVEPSLFPMLANWQREHTMEDIL 120
                       DYPDNPPNVRFQTR+NMTCVN ETGVVEPSLFPMLANWQREHTMEDIL
Sbjct: 625 GRIYQLKLFCGQDYPDNPPNVRFQTRVNMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 684

Query: 121 MQLKKEMTSPQNRRLSQPSEGNEDGRIDQKGLVLKCCIL 128
           MQLKKEMTSPQNRRLSQPSEGNEDGR+DQKGLVLKCCIL
Sbjct: 685 MQLKKEMTSPQNRRLSQPSEGNEDGRMDQKGLVLKCCIL 723

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BLAST of CsGy5G018720 vs. NCBI nr
Match: XP_022990021.1 (ubiquitin-conjugating enzyme E2 variant 1B-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 240.0 bits (611), Expect = 4.5e-60
Identity = 123/159 (77.36%), Postives = 126/159 (79.25%), Query Frame = 0


Query: 1   MGDEAAKVV----------------GIGDGTVSYGMDDADDIYMASWTGTIIGPPN---- 60
           MGDEAAKVV                GIGDGTVSYGMDDADDIYMASWTGTIIGPPN    
Sbjct: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  ------------DYPDNPPNVRFQTRINMTCVNSETGVVEPSLFPMLANWQREHTMEDIL 120
                       DYPDNPP+VRFQTRINMTCVN ETGVVEPSLFPML+NWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEGNEDGRIDQKGLVLKCCIL 128
           MQLKKEMTSPQNRRLSQPSEGNEDGR+DQKGLVLKCCIL
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEGNEDGRVDQKGLVLKCCIL 159

[Close]

BLAST of CsGy5G018720 vs. NCBI nr
Match: XP_022964925.1 (ubiquitin-conjugating enzyme E2 variant 1B isoform X1 [Cucurbita moschata] >XP_022964933.1 ubiquitin-conjugating enzyme E2 variant 1B isoform X1 [Cucurbita moschata] >XP_022964940.1 ubiquitin-conjugating enzyme E2 variant 1B isoform X1 [Cucurbita moschata] >XP_023540973.1 ubiquitin-conjugating enzyme E2 variant 1B isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.0 bits (606), Expect = 1.7e-59
Identity = 122/159 (76.73%), Postives = 125/159 (78.62%), Query Frame = 0


Query: 1   MGDEAAKVV----------------GIGDGTVSYGMDDADDIYMASWTGTIIGPPN---- 60
           MGDEA KVV                GIGDGTVSYGMDDADDIYMASWTGTIIGPPN    
Sbjct: 1   MGDEAEKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  ------------DYPDNPPNVRFQTRINMTCVNSETGVVEPSLFPMLANWQREHTMEDIL 120
                       DYPDNPP+VRFQTRINMTCVN ETGVVEPSLFPML+NWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEGNEDGRIDQKGLVLKCCIL 128
           MQLKKEMTSPQNRRLSQPSEGNEDGR+DQKGLVLKCCIL
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEGNEDGRVDQKGLVLKCCIL 159

[Close]

BLAST of CsGy5G018720 vs. TAIR10
Match: AT1G70660.1 (MMS ZWEI homologue 2)

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-47
Identity = 89/134 (66.42%), Postives = 104/134 (77.61%), Query Frame = 0


Query: 10  GIGDGTVSYGMDDADDIYMASWTGTIIGPPN----------------DYPDNPPNVRFQT 69
           GIGDGTVSYGMDDADDI M SWTGTI+GP N                DYP++PP VRFQ+
Sbjct: 26  GIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYEGKIFQLKLFCGKDYPESPPTVRFQS 85

Query: 70  RINMTCVNSETGVVEPSLFPMLANWQREHTMEDILMQLKKEMTSPQNRRLSQPSEGNEDG 128
           RINM CVN E GVV+PS FPML+NW+RE TMED+L+QLKKEM S QNR+L+QP EGNE+G
Sbjct: 86  RINMACVNPENGVVDPSHFPMLSNWRREFTMEDLLIQLKKEMMSSQNRKLAQPLEGNEEG 145

[Close]

BLAST of CsGy5G018720 vs. TAIR10
Match: AT1G23260.1 (MMS ZWEI homologue 1)

HSP 1 Score: 184.5 bits (467), Expect = 4.1e-47
Identity = 89/134 (66.42%), Postives = 103/134 (76.87%), Query Frame = 0


Query: 10  GIGDGTVSYGMDDADDIYMASWTGTIIGPPN----------------DYPDNPPNVRFQT 69
           GIGDGTVSYGMDDADDIYM SWTGTI+GPPN                +YP++PP VRFQT
Sbjct: 26  GIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQT 85

Query: 70  RINMTCVNSETGVVEPSLFPMLANWQREHTMEDILMQLKKEMTSPQNRRLSQPSEGNEDG 128
           RINM CVN ETGVVEPSLFPML NW+RE+TMEDIL++LKKEM +  NR+L+QP EGNE+ 
Sbjct: 86  RINMACVNPETGVVEPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPEGNEEA 145

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BLAST of CsGy5G018720 vs. TAIR10
Match: AT2G36060.2 (MMS ZWEI homologue 3)

HSP 1 Score: 148.7 bits (374), Expect = 2.5e-36
Identity = 74/117 (63.25%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 10  GIGDGTVSYGMDDADDIYMASWTGTIIGPPN-----------------DYPDNPPNVRFQ 69
           GIGDGTVSYGMDD DDIYM SWTGTIIGP N                 DYP+ PP VRF 
Sbjct: 27  GIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNVTVHEGRIYQLKLFCDKDYPEKPPTVRFH 86

Query: 70  TRINMTCVNSETGVVEPSLFPMLANWQREHTMEDILMQLKKEMTSPQNRRLSQPSEG 110
           +RINMTCVN +TGVV+   F +LANWQR++TMEDIL QLKKEM +  NR+L QP EG
Sbjct: 87  SRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKKEMAASHNRKLVQPPEG 143

[Close]

BLAST of CsGy5G018720 vs. TAIR10
Match: AT3G52560.4 (ubiquitin E2 variant 1D-4)

HSP 1 Score: 146.7 bits (369), Expect = 9.4e-36
Identity = 75/134 (55.97%), Postives = 85/134 (63.43%), Query Frame = 0


Query: 10  GIGDGTVSYGMDDADDIYMASWTGTIIGPPN----------------------------- 69
           GIGDGTVSYGMDD DDIYM SWTGTIIGP N                             
Sbjct: 28  GIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNIMPLLLLLVVTEINFMSQTVHEGRIYQLK 87

Query: 70  -----DYPDNPPNVRFQTRINMTCVNSETGVVEPSLFPMLANWQREHTMEDILMQLKKEM 110
                DYP+ PP VRF +R+NM CVN ETGVV+P  F +LANWQRE+TMEDIL+QLKKEM
Sbjct: 88  LFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDILVQLKKEM 147

[Close]

BLAST of CsGy5G018720 vs. Swiss-Prot
Match: sp|Q9CAB6|UEV1B_ARATH (Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana OX=3702 GN=UEV1B PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.9e-46
Identity = 89/134 (66.42%), Postives = 104/134 (77.61%), Query Frame = 0


Query: 10  GIGDGTVSYGMDDADDIYMASWTGTIIGPPN----------------DYPDNPPNVRFQT 69
           GIGDGTVSYGMDDADDI M SWTGTI+GP N                DYP++PP VRFQ+
Sbjct: 26  GIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYEGKIFQLKLFCGKDYPESPPTVRFQS 85

Query: 70  RINMTCVNSETGVVEPSLFPMLANWQREHTMEDILMQLKKEMTSPQNRRLSQPSEGNEDG 128
           RINM CVN E GVV+PS FPML+NW+RE TMED+L+QLKKEM S QNR+L+QP EGNE+G
Sbjct: 86  RINMACVNPENGVVDPSHFPMLSNWRREFTMEDLLIQLKKEMMSSQNRKLAQPLEGNEEG 145

[Close]

BLAST of CsGy5G018720 vs. Swiss-Prot
Match: sp|Q93YP0|UEV1A_ARATH (Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UEV1A PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 7.4e-46
Identity = 89/134 (66.42%), Postives = 103/134 (76.87%), Query Frame = 0


Query: 10  GIGDGTVSYGMDDADDIYMASWTGTIIGPPN----------------DYPDNPPNVRFQT 69
           GIGDGTVSYGMDDADDIYM SWTGTI+GPPN                +YP++PP VRFQT
Sbjct: 26  GIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQT 85

Query: 70  RINMTCVNSETGVVEPSLFPMLANWQREHTMEDILMQLKKEMTSPQNRRLSQPSEGNEDG 128
           RINM CVN ETGVVEPSLFPML NW+RE+TMEDIL++LKKEM +  NR+L+QP EGNE+ 
Sbjct: 86  RINMACVNPETGVVEPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPEGNEEA 145

[Close]

BLAST of CsGy5G018720 vs. Swiss-Prot
Match: sp|Q9SVD7|UEV1D_ARATH (Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana OX=3702 GN=UEV1D PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-36
Identity = 75/116 (64.66%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 10  GIGDGTVSYGMDDADDIYMASWTGTIIGPPN----------------DYPDNPPNVRFQT 69
           GIGDGTVSYGMDD DDIYM SWTGTIIGP N                DYP+ PP VRF +
Sbjct: 28  GIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHS 87

Query: 70  RINMTCVNSETGVVEPSLFPMLANWQREHTMEDILMQLKKEMTSPQNRRLSQPSEG 110
           R+NM CVN ETGVV+P  F +LANWQRE+TMEDIL+QLKKEM++  NR+L QP EG
Sbjct: 88  RVNMACVNHETGVVDPKKFGLLANWQREYTMEDILVQLKKEMSTSHNRKLVQPPEG 143

[Close]

BLAST of CsGy5G018720 vs. Swiss-Prot
Match: sp|Q9SJ44|UEV1C_ARATH (Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana OX=3702 GN=UEV1C PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.4e-35
Identity = 74/116 (63.79%), Postives = 83/116 (71.55%), Query Frame = 0


Query: 10  GIGDGTVSYGMDDADDIYMASWTGTIIGPPN----------------DYPDNPPNVRFQT 69
           GIGDGTVSYGMDD DDIYM SWTGTIIGP N                DYP+ PP VRF +
Sbjct: 27  GIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHS 86

Query: 70  RINMTCVNSETGVVEPSLFPMLANWQREHTMEDILMQLKKEMTSPQNRRLSQPSEG 110
           RINMTCVN +TGVV+   F +LANWQR++TMEDIL QLKKEM +  NR+L QP EG
Sbjct: 87  RINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKKEMAASHNRKLVQPPEG 142

[Close]

BLAST of CsGy5G018720 vs. Swiss-Prot
Match: sp|Q54D06|UBE2V_DICDI (Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum OX=44689 GN=ube2v PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.2e-25
Identity = 53/114 (46.49%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 12  GDGTVSYGMDDADDIYMASWTGTIIGPPN----------------DYPDNPPNVRFQTRI 71
           GDGT+SYG++  DDI ++SW GTIIGP N                DYP+ PP VRF T+I
Sbjct: 22  GDGTISYGLESPDDILLSSWIGTIIGPQNTPFDNRFYSLKLYCDKDYPNKPPTVRFTTKI 81

Query: 72  NMTCVNSETGVVEPSLFPMLANWQREHTMEDILMQLKKEMTSPQNRRLSQPSEG 110
           N+ CVN + GVV+P   P+L+NW  ++ +++IL +L++EM+S  N++L QP EG
Sbjct: 82  NIGCVNQQNGVVDPKNLPILSNWTSKNRIQNILSELRREMSSSSNKKLVQPPEG 135

[Close]

BLAST of CsGy5G018720 vs. TrEMBL
Match: tr|A0A0A0KSP5|A0A0A0KSP5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G547590 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 7.1e-62
Identity = 127/159 (79.87%), Postives = 127/159 (79.87%), Query Frame = 0


Query: 1   MGDEAAKVV----------------GIGDGTVSYGMDDADDIYMASWTGTIIGPPN---- 60
           MGDEAAKVV                GIGDGTVSYGMDDADDIYMASWTGTIIGPPN    
Sbjct: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  ------------DYPDNPPNVRFQTRINMTCVNSETGVVEPSLFPMLANWQREHTMEDIL 120
                       DYPDNPPNVRFQTRINMTCVNSETGVVEPSLFPMLANWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNSETGVVEPSLFPMLANWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEGNEDGRIDQKGLVLKCCIL 128
           MQLKKEMTSPQNRRLSQPSEGNEDGRIDQKGLVLKCCIL
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEGNEDGRIDQKGLVLKCCIL 159

[Close]

BLAST of CsGy5G018720 vs. TrEMBL
Match: tr|A0A1S4E671|A0A1S4E671_CUCME (uncharacterized protein LOC103483035 OS=Cucumis melo OX=3656 GN=LOC103483035 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 7.8e-61
Identity = 124/159 (77.99%), Postives = 126/159 (79.25%), Query Frame = 0


Query: 1   MGDEAAKVV----------------GIGDGTVSYGMDDADDIYMASWTGTIIGPPN---- 60
           MGDEAAKVV                GIGDGTVSYGMDDADDIYMASWTGTIIGPPN    
Sbjct: 565 MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 624

Query: 61  ------------DYPDNPPNVRFQTRINMTCVNSETGVVEPSLFPMLANWQREHTMEDIL 120
                       DYPDNPPNVRFQTR+NMTCVN ETGVVEPSLFPMLANWQREHTMEDIL
Sbjct: 625 GRIYQLKLFCGQDYPDNPPNVRFQTRVNMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 684

Query: 121 MQLKKEMTSPQNRRLSQPSEGNEDGRIDQKGLVLKCCIL 128
           MQLKKEMTSPQNRRLSQPSEGNEDGR+DQKGLVLKCCIL
Sbjct: 685 MQLKKEMTSPQNRRLSQPSEGNEDGRMDQKGLVLKCCIL 723

[Close]

BLAST of CsGy5G018720 vs. TrEMBL
Match: tr|A0A2P4K007|A0A2P4K007_QUESU (Ubiquitin-conjugating enzyme e2 variant 1b OS=Quercus suber OX=58331 GN=CFP56_51116 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.1e-54
Identity = 108/134 (80.60%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 10  GIGDGTVSYGMDDADDIYMASWTGTIIGPPN----------------DYPDNPPNVRFQT 69
           GIGDGTVSYGMDDADDIYM SWTGTIIGPPN                DYPDNPP VRFQT
Sbjct: 26  GIGDGTVSYGMDDADDIYMQSWTGTIIGPPNTVHEGRIYQLKLFCGKDYPDNPPTVRFQT 85

Query: 70  RINMTCVNSETGVVEPSLFPMLANWQREHTMEDILMQLKKEMTSPQNRRLSQPSEGNEDG 128
           RINMTCVN ETGVVEPSLFPMLANWQREHTMEDIL QLKKEM SPQNR+LSQP EGNE+G
Sbjct: 86  RINMTCVNQETGVVEPSLFPMLANWQREHTMEDILTQLKKEMMSPQNRKLSQPPEGNEEG 145

[Close]

BLAST of CsGy5G018720 vs. TrEMBL
Match: tr|A0A2N9FBP2|A0A2N9FBP2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16169 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.4e-54
Identity = 105/134 (78.36%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 10  GIGDGTVSYGMDDADDIYMASWTGTIIGPPN----------------DYPDNPPNVRFQT 69
           GIGDGTVSYGMDDADDIYM SWTGTIIGPPN                DYPDNPP VRFQT
Sbjct: 38  GIGDGTVSYGMDDADDIYMQSWTGTIIGPPNTVHEGRIYQLKLFCGKDYPDNPPTVRFQT 97

Query: 70  RINMTCVNSETGVVEPSLFPMLANWQREHTMEDILMQLKKEMTSPQNRRLSQPSEGNEDG 128
           R+NMTCVN ETGVVEPSLFPMLANWQREHTMED+L QLKKEM SPQNR+L+QP EGNE+G
Sbjct: 98  RLNMTCVNQETGVVEPSLFPMLANWQREHTMEDVLTQLKKEMMSPQNRKLAQPPEGNEEG 157

[Close]

BLAST of CsGy5G018720 vs. TrEMBL
Match: tr|A5B7Q8|A5B7Q8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g05630 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 2.1e-53
Identity = 106/134 (79.10%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 10  GIGDGTVSYGMDDADDIYMASWTGTIIGPPN----------------DYPDNPPNVRFQT 69
           GIGDGTVSYGMDDADDIYM SWTGTIIGPPN                DYPDNPP V+FQT
Sbjct: 26  GIGDGTVSYGMDDADDIYMQSWTGTIIGPPNTVHEGRIYQLKLFCGQDYPDNPPTVKFQT 85

Query: 70  RINMTCVNSETGVVEPSLFPMLANWQREHTMEDILMQLKKEMTSPQNRRLSQPSEGNEDG 128
           RINMTCVN ETGVVEPSLFPMLA WQREHTMEDIL QLKKEM SPQNR+L+QP EGNE+ 
Sbjct: 86  RINMTCVNQETGVVEPSLFPMLATWQREHTMEDILTQLKKEMMSPQNRKLAQPPEGNEEA 145

The following BLAST results are available for this feature:

BLAST of CsGy5G018720 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51442.1	1.1e-61	79.87	hypothetical protein Csa_5G547590 [Cucumis sativus]	[more]
XP_011656243.1	1.1e-61	79.87	PREDICTED: zinc finger protein VAR3, chloroplastic [Cucumis sativus]	[more]
XP_016903717.1	1.2e-60	77.99	PREDICTED: uncharacterized protein LOC103483035 [Cucumis melo]	[more]
XP_022990021.1	4.5e-60	77.36	ubiquitin-conjugating enzyme E2 variant 1B-like isoform X2 [Cucurbita maxima]	[more]
XP_022964925.1	1.7e-59	76.73	ubiquitin-conjugating enzyme E2 variant 1B isoform X1 [Cucurbita moschata] >XP_0...	[more]

BLAST of CsGy5G018720 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70660.1	1.1e-47	66.42	MMS ZWEI homologue 2	[more]
AT1G23260.1	4.1e-47	66.42	MMS ZWEI homologue 1	[more]
AT2G36060.2	2.5e-36	63.25	MMS ZWEI homologue 3	[more]
AT3G52560.4	9.4e-36	55.97	ubiquitin E2 variant 1D-4	[more]

BLAST of CsGy5G018720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9CAB6\|UEV1B_ARATH	1.9e-46	66.42	Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
sp\|Q93YP0\|UEV1A_ARATH	7.4e-46	66.42	Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
sp\|Q9SVD7\|UEV1D_ARATH	1.4e-36	64.66	Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
sp\|Q9SJ44\|UEV1C_ARATH	3.4e-35	63.79	Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
sp\|Q54D06\|UBE2V_DICDI	4.2e-25	46.49	Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum OX=...	[more]

BLAST of CsGy5G018720 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KSP5\|A0A0A0KSP5_CUCSA	7.1e-62	79.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G547590 PE=4 SV=1	[more]
tr\|A0A1S4E671\|A0A1S4E671_CUCME	7.8e-61	77.99	uncharacterized protein LOC103483035 OS=Cucumis melo OX=3656 GN=LOC103483035 PE=...	[more]
tr\|A0A2P4K007\|A0A2P4K007_QUESU	1.1e-54	80.60	Ubiquitin-conjugating enzyme e2 variant 1b OS=Quercus suber OX=58331 GN=CFP56_51...	[more]
tr\|A0A2N9FBP2\|A0A2N9FBP2_FAGSY	5.4e-54	78.36	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16169 PE=4 SV=1	[more]
tr\|A5B7Q8\|A5B7Q8_VITVI	2.1e-53	79.10	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g05630 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000608	UBQ-conjugat_E2
IPR016135	UBQ-conjugating_enzyme/RWD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006301	postreplication repair
biological_process	GO:0070534	protein K63-linked ubiquitination
biological_process	GO:0008150	biological_process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0031625	ubiquitin protein ligase binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G018720.1	CsGy5G018720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	G3DSA:3.10.110.10		coord: 41..112 e-value: 1.7E-25 score: 91.3 coord: 3..40 e-value: 1.4E-7 score: 33.2
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	SSF54495	UBC-like	coord: 10..109
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 39..102 e-value: 2.0E-7 score: 30.6
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBIQUITIN_CONJUGAT_2	coord: 39..106 score: 10.865
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..114
None	No IPR available	PANTHER	PTHR43915	FAMILY NOT NAMED	coord: 40..109
None	No IPR available	PANTHER	PTHR43915:SF4	UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 1D	coord: 40..109
None	No IPR available	PANTHER	PTHR43915	FAMILY NOT NAMED	coord: 9..40
None	No IPR available	PANTHER	PTHR43915:SF4	UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 1D	coord: 9..40

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G018720	Cla003950	Watermelon (97103) v1	cgybwmB386
CsGy5G018720	Cla003400	Watermelon (97103) v1	cgybwmB364
CsGy5G018720	Csa5G547590	Cucumber (Chinese Long) v2	cgybcuB229
CsGy5G018720	MELO3C005277	Melon (DHL92) v3.5.1	cgybmeB305
CsGy5G018720	ClCG01G006500	Watermelon (Charleston Gray)	cgybwcgB336
CsGy5G018720	CSPI05G18710	Wild cucumber (PI 183967)	cgybcpiB234
CsGy5G018720	CmaCh15G009760	Cucurbita maxima (Rimu)	cgybcmaB605
CsGy5G018720	CmaCh04G021100	Cucurbita maxima (Rimu)	cgybcmaB678
CsGy5G018720	CmoCh04G022110	Cucurbita moschata (Rifu)	cgybcmoB656
CsGy5G018720	CmoCh15G010230	Cucurbita moschata (Rifu)	cgybcmoB579
CsGy5G018720	Cp4.1LG13g03520	Cucurbita pepo (Zucchini)	cgybcpeB615
CsGy5G018720	Cp4.1LG01g18290	Cucurbita pepo (Zucchini)	cgybcpeB651
CsGy5G018720	MELO3C005277.2	Melon (DHL92) v3.6.1	cgybmedB306
CsGy5G018720	CsaV3_5G028100	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G018720	Cla97C01G006810	Watermelon (97103) v2	cgybwmbB323
CsGy5G018720	Bhi12G000814	Wax gourd	cgybwgoB418
CsGy5G018720	Carg23727	Silver-seed gourd	carcgybB0940
CsGy5G018720	Carg26059	Silver-seed gourd	carcgybB0436

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G018720	Cucumber (Chinese Long) v2	cgybcuB223
CsGy5G018720	Bottle gourd (USVL1VR-Ls)	cgyblsiB299
CsGy5G018720	Bottle gourd (USVL1VR-Ls)	cgyblsiB301
CsGy5G018720	Melon (DHL92) v3.5.1	cgybmeB293
CsGy5G018720	Melon (DHL92) v3.5.1	cgybmeB308
CsGy5G018720	Melon (DHL92) v3.6.1	cgybmedB293
CsGy5G018720	Melon (DHL92) v3.6.1	cgybmedB308
CsGy5G018720	Watermelon (Charleston Gray)	cgybwcgB340
CsGy5G018720	Watermelon (97103) v1	cgybwmB389
CsGy5G018720	Wild cucumber (PI 183967)	cgybcpiB225
CsGy5G018720	Silver-seed gourd	carcgybB0867
CsGy5G018720	Watermelon (97103) v2	cgybwmbB327
CsGy5G018720	Wax gourd	cgybwgoB426