CsGy4G021220 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G021220
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionubiquitin domain-containing protein 1-like
LocationChr4 : 27891785 .. 27895576 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACCAGAGGGACTCAAAGCTTCGGCTTTTGACTTTTTGGACTCTCAGCGAACCTTCTTCCCTCTGTTCACTTTTTCCTTCCAAATCTGCCTTTCCTCTTCCTTCTCTTCTCACCCCTTTTCTTCTTTTTCTCTCCAAATTTTGTACTCTTTAATGGGTTGTGCCGGATCGTCGCAGGCCAAAGGCGACGGTGAGTTTATTCTTCAACTTACTTTTCCCATATTCTGATTGTTTTCCGAGATTCTTCTTCTGCCAAATGAAGGATTGTCACCTTTTTTCTCATGTTTAATTCTGGGCTTCTATTCGTTTTCAGTTCTATGATGAATTTGCAGTGACCCCACTTTGATGGAGTGGTTAATCGTGTTTGGGAAAAGTGTTTGTGGAATGCAAGATGGGAATTTGTTAATCTGAATTAGCTTTATTGTTAAGCGAATAGATTGTTGGCATTTTAGTCTGTGTGATTCACTGATTGCCTTTTGAGCTTGTAGTGAATGATTGGTCTTTTCTTGAGTGTAATTTGTGTTTTTATTGCCTTTTCGTTATAAGACATTTGGTTTTGAGCTTCTTTAGCTTGTAATTAATGGTCTTGAAGAGCTGAGATTCATTGGTTTTTTCATTTAGTTGTAGCAATTTATTTGATTGCTGAAGTTTTTAATTGGAAACTCTGTGGTCTTTGGTATTTTTTTCATCATTTTATTGGGATGCCAATTTAGGGCGGTTAGTTCTTTGTATCTCATACACCCCTGCAGTGATTGCTAAACCTCTTTGAGCTGGTTGGCTGGGCACTTTTCTGTTGTTTGTTCATGGGCTCCTTTTTGTTACGCTTATTTTTCTTGTATGCCCTTGTAGTTCTTTGTTTTTCTCAATGGAATTTTAAAAAAGTGTTGGTTCTGCTGATCTCCCTCGTGGAGTTGAGTTTTTAAAGCTGATATGATACTATTATTCAATGAAAGGATTGAAATGCTCATAGTAATTCTCATGGATTTGGGGAATTTGATGTTAACATTCGTCGCCAGCTTCTTATGTTGTAAAGTCGATGTGATTGGTTCTTGCATTGATTATCCATTTATTTTTCTAATGAAATTCAGCCTCTTCAACTTTATTTCTTCAATCATCGTTCTTTAGGTGTTAATCTCAAAAGCTATAAGGAACTTATAGGATCCTCTTAGTCACTTGAAGATTCTTTTTTGATTCAGGGTCTGTGAAAAAAATCCGGAAGCCTAAACCTTGGAAGAATCCCCAGCCAATAACAAAGACAGATCTTGTGCGGATGCGTGATGAATTTTGGGATACTGCACCTCATTATGGTGGCAGAAAAGGTAACACTGTAATGCCAATTTTTTTATCTTGCATAATATTTCTAGTCTTTGTAATTTATTGTTGACCTGATCTTGAACTTTATATCACATTTTATGTAAAAGGTAACTGAGACTAGAATGACTAAAAGAAGTTCTTCAATGCTCATGAAAATTTATGATTCAGAAAGATTGTTACACTGGTTTCGTGCTACTGATTATCTTCAGGATCATTATGTGCAAAGATTTCCCAGTCTAGTTGGTCACGACTCATGAAAAGTAATCCTCTATATTTAGCATCGTGGCCTCTCAAAGAAACAGAAATTTTACTAGAAAGGAAGAGAATTTTGTATTATGGATCATCAAGAATTTAAGAGTGATCTCTATTTAAGACTATGCTGTCGAGCATTTTCCACCACCCTCATTTGTTTGAGCAGTTGTTAGCCAGGCTGATTGAGTCTATCAGAAAATGCTTTCTACTTAGGAGTATTAGTTGGTCAGTTCTTTAATTTAAAGGTTCACTACATATCTTCTAGTTTTGAACTGCAGATAGACAAGGCACATTAAGTCTTAGACCTCTAGTTAAATTACCATATAGTTCAGCAGAATGTACATCCTCAATGCCATTGATCTGTATAAAAATGCTCTGCTTCAATGTGTGCCCGATTCGAGGGTACAACTATGCATGAATGTGACCAATAGTTGAATAAAAGTGAGAAAAACAGGAATGAGTGTGCTAATAAACAACTTATATTACGTAATTGTAGCCATGGAATTGATGAAAGCTGCTTTAATGATAATGTGTAATGTAAACTTTCATTGGCTGGACTAGTGGTAGAAAAGGAGACATAATCTCAATAAATGACTAAGAAGTCATGGTTCAATCTAGGTAGCAATCTACCTAGGAATTAATTTTCTATGGATTTTCTTGACCCTCAAATGTTTAGGGTTAAATGGGTTATCCTATGAATCGTTAGATCAGTCTACATGCGTAAGTTGGTCTGAACATTCACGAATATAAAAAAAATGGTAACGTGTAATGTAAAGTCGTCTTTTTCCTCAGCTTATCTACCCTCATTCACAAAGGAGCTGCTCTTTTGTACTATGTCTCAGATAGAATGTTCTTTTATGATCTATTTCATCAATAAATGAGATGGTTTCTATTTCCTATGAAAGAAAATGGTAATATGTATTGAAGCAAGTAGGAGAAATTATCATTAGCATCCAAGGCTTTAAATTCAGTTTCAAATTTTGTTTCATGCATTTTGCAAATGAAGCTACACCTCATCAATTGGTCGTTAGTGAAGTTAGACATTAGACTATGGCATGAGTTTTTGTTTGTTGTTCATATTCATGTTCACCAGATGATTGTGCTCTGTAGTGTTCATATAAGAGCTGAAACCATTAAAAAGAATCTTATTTTGTGGGCATTAGAGATCTGGGATGCACTTCGAGCTGCTGCAGAAGCTGATTTGACGCTAGCACAAGCAATTGTGGATAGTGCAGGGATCATTGTACAAAGTGCTGATTTAACCATTTGTTATGATGAAAGAGGTATTTATAATCAACCCCACTACTTTTATTAATCCAAAAAGCACCCCACCACTCTTTAGAATATCTTCACTCTACCTTGCATACTTCATTCTTGGATCTAGGATCTAATGCTTGGTTTCTGTGGCATTGGGAAAATTGTAATATTGTTAATATCTTATTCTGATTGGAAAACGCGAAATATTACTATAATTTATTTATTCAGTTAGAATGAAAGTCATGAATATAGATAAGATAAGATATAAGATAGTTCCATTGTCCAAGGAAAAACGAAGTTGTGAGTATTGAGTGTGGCATTAGATGGTTCGATCCAACACTCTTTTTGCATATATTATCAATTGTGATTTAAATTTCCTAATGTTTTTTTTTTTTTTTATCCTTTCTCACAAATCAATTGCAGGTGCGAAATACGAATTGCCTAAGTATGTTTTGAGCGAGCCAACAAACTTGGTTTGAAGTAAAATATGAGAGAGATGAGGAAGAGGCTGTGTATCTTTTGTGTTGGAAATTGATTGTAAATCATGTATATTACAATATTACTTCCTTTTCTAATGTTTCTTTTCAGTCTGTACTTTGAAAGATTTCCCATATTGATCAATTGGGGACTTGCGCTAACTTGCTGTAAGTTCGTTTTGATCCAATGAAAGGAATGAAATGTCTATTTGGAGTTGTCTCGGTCTTGTCCTATTGAGTTACAGATATTTATTATCGTAAACATTTAATTCCTACACATATATGCAATTTGGTTAAACCCAAAGAGAGTTCATCATCCTAATATCAATTAGGTTCTCCATATTATGTTATTCCTCGTTTCACATGTATATTGGTTAAATTTCATAATCTATTGTCATATATAAATGGACAAAATTGACTTTGGATTTATTTTTTATAGGTTTTTCAATAGATGTGCCACAGTTATTAAAGAAACTGGCATTGATTAAA

mRNA sequence

ATGAAAACCAGAGGGACTCAAAGCTTCGGCTTTTGACTTTTTGGACTCTCAGCGAACCTTCTTCCCTCTGTTCACTTTTTCCTTCCAAATCTGCCTTTCCTCTTCCTTCTCTTCTCACCCCTTTTCTTCTTTTTCTCTCCAAATTTTGTACTCTTTAATGGGTTGTGCCGGATCGTCGCAGGCCAAAGGCGACGGGTCTGTGAAAAAAATCCGGAAGCCTAAACCTTGGAAGAATCCCCAGCCAATAACAAAGACAGATCTTGTGCGGATGCGTGATGAATTTTGGGATACTGCACCTCATTATGGTGGCAGAAAAGATAGACAAGGCACATTAAGTCTTAGACCTCTAGTTAAATTACCATATAGTTCAGCAGAATGTACATCCTCAATGCCATTGATCTGTATAAAAATGCTCTGCTTCAATGTGTGCCCGATTCGAGGTGTTCATATAAGAGCTGAAACCATTAAAAAGAATCTTATTTTGTGGGCATTAGAGATCTGGGATGCACTTCGAGCTGCTGCAGAAGCTGATTTGACGCTAGCACAAGCAATTGTGGATAGTGCAGGGATCATTGTACAAAGTGCTGATTTAACCATTTGTTATGATGAAAGAGGTGCGAAATACGAATTGCCTAAGTATGTTTTGAGCGAGCCAACAAACTTGGTTTGAAGTAAAATATGAGAGAGATGAGGAAGAGGCTGTGTATCTTTTGTGTTGGAAATTGATTGTAAATCATGTATATTACAATATTACTTCCTTTTCTAATGTTTCTTTTCAGTCTGTACTTTGAAAGATTTCCCATATTGATCAATTGGGGACTTGCGCTAACTTGCTGTAAGTTCGTTTTGATCCAATGAAAGGAATGAAATGTCTATTTGGAGTTGTCTCGGTCTTGTCCTATTGAGTTACAGATATTTATTATCGTAAACATTTAATTCCTACACATATATGCAATTTGGTTAAACCCAAAGAGAGTTCATCATCCTAATATCAATTAGGTTCTCCATATTATGTTATTCCTCGTTTCACATGTATATTGGTTAAATTTCATAATCTATTGTCATATATAAATGGACAAAATTGACTTTGGATTTATTTTTTATAGGTTTTTCAATAGATGTGCCACAGTTATTAAAGAAACTGGCATTGATTAAA

Coding sequence (CDS)

ATGGGTTGTGCCGGATCGTCGCAGGCCAAAGGCGACGGGTCTGTGAAAAAAATCCGGAAGCCTAAACCTTGGAAGAATCCCCAGCCAATAACAAAGACAGATCTTGTGCGGATGCGTGATGAATTTTGGGATACTGCACCTCATTATGGTGGCAGAAAAGATAGACAAGGCACATTAAGTCTTAGACCTCTAGTTAAATTACCATATAGTTCAGCAGAATGTACATCCTCAATGCCATTGATCTGTATAAAAATGCTCTGCTTCAATGTGTGCCCGATTCGAGGTGTTCATATAAGAGCTGAAACCATTAAAAAGAATCTTATTTTGTGGGCATTAGAGATCTGGGATGCACTTCGAGCTGCTGCAGAAGCTGATTTGACGCTAGCACAAGCAATTGTGGATAGTGCAGGGATCATTGTACAAAGTGCTGATTTAACCATTTGTTATGATGAAAGAGGTGCGAAATACGAATTGCCTAAGTATGTTTTGAGCGAGCCAACAAACTTGGTTTGA

Protein sequence

MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGTLSLRPLVKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDALRAAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV
Homology
[Close]
BLAST of CsGy4G021220 vs. NCBI nr
Match: XP_004146021.1 (PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis sativus] >KGN55055.1 hypothetical protein Csa_4G626080 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 1.8e-48
Identity = 111/170 (65.29%), Postives = 111/170 (65.29%), Query Frame = 0 

Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGTLS 60
           MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRK       
Sbjct: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRK------- 60

Query: 61  LRPLVKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDALRA 120
                                                               EIWDALRA
Sbjct: 61  ----------------------------------------------------EIWDALRA 111

Query: 121 AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 171
           AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV
Sbjct: 121 AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 111

[Close]
BLAST of CsGy4G021220 vs. NCBI nr
Match: XP_008463752.1 (PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 201.4 bits (511), Expect = 2.4e-48
Identity = 110/170 (64.71%), Postives = 111/170 (65.29%), Query Frame = 0 

Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGTLS 60
           MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRK       
Sbjct: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRK------- 60

Query: 61  LRPLVKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDALRA 120
                                                               EIWDALRA
Sbjct: 61  ----------------------------------------------------EIWDALRA 111

Query: 121 AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 171
           AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNL+
Sbjct: 121 AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]
BLAST of CsGy4G021220 vs. NCBI nr
Match: XP_022144511.1 (ubiquitin domain-containing protein 1-like [Momordica charantia])

HSP 1 Score: 191.0 bits (484), Expect = 3.2e-45
Identity = 104/170 (61.18%), Postives = 109/170 (64.12%), Query Frame = 0 

Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGTLS 60
           MGCAGSSQAKGDG VKKIRKPK WK+PQPITKT+LV+MRDEFWDTAPHYGGRK       
Sbjct: 1   MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRK------- 60

Query: 61  LRPLVKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDALRA 120
                                                               EIWDALRA
Sbjct: 61  ----------------------------------------------------EIWDALRA 111

Query: 121 AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 171
           AAEADLTLAQAIVDSAG+IVQSADLTICYDERGAKYELPKYVLSEPTNL+
Sbjct: 121 AAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]
BLAST of CsGy4G021220 vs. NCBI nr
Match: XP_022941497.1 (ubiquitin domain-containing protein 1-like [Cucurbita moschata] >XP_022981235.1 ubiquitin domain-containing protein 1-like [Cucurbita maxima] >XP_023525955.1 ubiquitin domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.1 bits (479), Expect = 1.2e-44
Identity = 103/170 (60.59%), Postives = 107/170 (62.94%), Query Frame = 0 

Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGTLS 60
           MGCAGSSQAKGDG VKKIRKPK WK+PQPITKTDL RMRDEFWDTAPHYGG K       
Sbjct: 1   MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTK------- 60

Query: 61  LRPLVKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDALRA 120
                                                               EIWDALRA
Sbjct: 61  ----------------------------------------------------EIWDALRA 111

Query: 121 AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 171
           AAEADLTLAQAIVDSAG+IVQSADLTICYDERGA+YELPKYVLSEPTNL+
Sbjct: 121 AAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 111

[Close]
BLAST of CsGy4G021220 vs. NCBI nr
Match: XP_002285516.1 (PREDICTED: ubiquitin domain-containing protein 1 [Vitis vinifera] >CAN66729.1 hypothetical protein VITISV_025684 [Vitis vinifera] >CBI20170.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 188.7 bits (478), Expect = 1.6e-44
Identity = 101/170 (59.41%), Postives = 108/170 (63.53%), Query Frame = 0 

Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGTLS 60
           MGCAGSSQ KGDG+VKKIRKPKPWKNPQP+TKT L++MRDEFWDTAPHYGG+K       
Sbjct: 1   MGCAGSSQTKGDGTVKKIRKPKPWKNPQPLTKTQLMQMRDEFWDTAPHYGGQK------- 60

Query: 61  LRPLVKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDALRA 120
                                                               EIWDALRA
Sbjct: 61  ----------------------------------------------------EIWDALRA 111

Query: 121 AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 171
           AAEADLTLAQAIVDSAG+IVQSADLTICYDERGAKYELP YVLSEPTNL+
Sbjct: 121 AAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPHYVLSEPTNLI 111

[Close]
BLAST of CsGy4G021220 vs. TAIR10
Match: AT1G53400.1 (Ubiquitin domain-containing protein)

HSP 1 Score: 174.9 bits (442), Expect = 4.3e-44
Identity = 92/169 (54.44%), Postives = 106/169 (62.72%), Query Frame = 0 

Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGTLS 60
           MGCAGS+Q++ DGSVKKIRKPKPWK+ QPITK +L+++R+EFWDTAPHYGGRK       
Sbjct: 1   MGCAGSTQSQADGSVKKIRKPKPWKHTQPITKAELMKLREEFWDTAPHYGGRK------- 60

Query: 61  LRPLVKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDALRA 120
                                                               EIWDALRA
Sbjct: 61  ----------------------------------------------------EIWDALRA 110

Query: 121 AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNL 170
           AAEAD++LAQAIVDSAG+IVQ+ DLT+CYDERGAKYELPKYVLSEPTNL
Sbjct: 121 AAEADISLAQAIVDSAGVIVQNTDLTVCYDERGAKYELPKYVLSEPTNL 110

[Close]
BLAST of CsGy4G021220 vs. TAIR10
Match: AT5G45740.1 (Ubiquitin domain-containing protein)

HSP 1 Score: 147.5 bits (371), Expect = 7.4e-36
Identity = 80/172 (46.51%), Postives = 97/172 (56.40%), Query Frame = 0 

Query: 1   MGCAGSSQAKGDGSV--KKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGT 60
           MGC GSSQA+ +G    KKI KPKPW + +PIT+  L  MR+EFWDT+PHYGG++     
Sbjct: 1   MGCIGSSQARNEGGAKRKKIMKPKPWAHTEPITRAQLTNMREEFWDTSPHYGGQR----- 60

Query: 61  LSLRPLVKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDAL 120
                                                                 EIW+AL
Sbjct: 61  ------------------------------------------------------EIWEAL 113

Query: 121 RAAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 171
           RAAAEADL LAQ IVDSAG+IVQ+ DLT+C+DERGA+YELP+YVLSEPTNL+
Sbjct: 121 RAAAEADLKLAQTIVDSAGVIVQNRDLTLCWDERGARYELPRYVLSEPTNLI 113

[Close]
BLAST of CsGy4G021220 vs. TAIR10
Match: AT1G16960.1 (Ubiquitin domain-containing protein)

HSP 1 Score: 137.5 bits (345), Expect = 7.7e-33
Identity = 76/171 (44.44%), Postives = 98/171 (57.31%), Query Frame = 0 

Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGTLS 60
           MGC+ SS+   +G  +KIR+PK WK+PQPI++ +L +MR+EFWDTAPHYGG+K       
Sbjct: 1   MGCS-SSRTIAEGKKEKIRRPKTWKHPQPISRDELTQMREEFWDTAPHYGGKK------- 60

Query: 61  LRPLVKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDALRA 120
                                                               EIWDALRA
Sbjct: 61  ----------------------------------------------------EIWDALRA 111

Query: 121 AAEA-DLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 171
           AAE  DL+LAQ I++SAG+IVQ+ DLTICYDE+G+KYELPKYVL +P+NL+
Sbjct: 121 AAEEDDLSLAQTILESAGVIVQNTDLTICYDEKGSKYELPKYVLRDPSNLI 111

[Close]
BLAST of CsGy4G021220 vs. Swiss-Prot
Match: sp|Q4V8W7|UBTD1_DANRE (Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.0e-15
Identity = 59/174 (33.91%), Postives = 73/174 (41.95%), Query Frame = 0 

Query: 2   GCAGSSQAKGDGSVKKIRKPKP-WKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGTLS 61
           G    +Q K  G  + ++K KP WK+  P+T+  L   RDEFWDTAP + GRK       
Sbjct: 14  GRGSRTQRKRGGRNEPLKKDKPKWKSDYPMTEGQLRSKRDEFWDTAPAFEGRK------- 73

Query: 62  LRPLVKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDALRA 121
                                                               EIWDAL+A
Sbjct: 74  ----------------------------------------------------EIWDALKA 128

Query: 122 AAEA----DLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 171
           AA A    D  LAQAIVD A I +    LT CYDE G +Y+LP Y L+ P NL+
Sbjct: 134 AAVALECSDHELAQAIVDGANITLPHGSLTECYDELGNRYQLPVYCLAPPVNLI 128

[Close]
BLAST of CsGy4G021220 vs. Swiss-Prot
Match: sp|Q6GL38|UBTD1_XENTR (Ubiquitin domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.6e-14
Identity = 58/172 (33.72%), Postives = 71/172 (41.28%), Query Frame = 0 

Query: 4   AGSSQAKGDGSVKKIRKPKP-WKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGTLSLR 63
           A   Q K  G  + ++K +P WK+  P+T   L   RDEFWDTAP + GRK         
Sbjct: 19  ASGQQRKRAGRNEPLKKERPRWKSDYPMTDGQLRSKRDEFWDTAPAFEGRK--------- 78

Query: 64  PLVKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDALRAAA 123
                                                             EIWDAL+AAA
Sbjct: 79  --------------------------------------------------EIWDALKAAA 131

Query: 124 EA----DLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 171
            A    D  LAQAIVD A I +    LT CYDE G +Y+LP Y L+ P NL+
Sbjct: 139 FAVEANDHELAQAIVDGASITLPHGSLTECYDELGTRYQLPVYCLAPPVNLI 131

[Close]
BLAST of CsGy4G021220 vs. Swiss-Prot
Match: sp|Q6DG43|UBTD2_DANRE (Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-14
Identity = 58/170 (34.12%), Postives = 70/170 (41.18%), Query Frame = 0 

Query: 5   GSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGTLSLRPL 64
           G+  A G     K  KPK WK+  P+T   L   RDEFWDTAP + GRK           
Sbjct: 21  GTGVALGRNQPLKREKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRK----------- 80

Query: 65  VKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDALRAAAEA 124
                                                           EIWDAL+AAA+A
Sbjct: 81  ------------------------------------------------EIWDALKAAAQA 130

Query: 125 ----DLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 171
               D  LAQAI+D A I +    LT CYDE G +Y+LP Y LS P N++
Sbjct: 141 FESNDHELAQAIIDGASITLPHGALTECYDELGNRYQLPVYCLSPPVNMI 130

[Close]
BLAST of CsGy4G021220 vs. Swiss-Prot
Match: sp|Q5EAE3|UBTD2_BOVIN (Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-13
Identity = 57/170 (33.53%), Postives = 69/170 (40.59%), Query Frame = 0 

Query: 5   GSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGTLSLRPL 64
           G+  A G     K  KPK WK+  P+T   L   RDEFWDTAP + GRK           
Sbjct: 21  GTGVALGRNQPLKKEKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRK----------- 80

Query: 65  VKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDALRAAAEA 124
                                                           EIWDAL+AAA A
Sbjct: 81  ------------------------------------------------EIWDALKAAAHA 130

Query: 125 ----DLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 171
               D  LAQAI+D A I +    LT CYDE G +Y+LP Y L+ P N++
Sbjct: 141 FESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMI 130

[Close]
BLAST of CsGy4G021220 vs. Swiss-Prot
Match: sp|Q8WUN7|UBTD2_HUMAN (Ubiquitin domain-containing protein 2 OS=Homo sapiens OX=9606 GN=UBTD2 PE=1 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-13
Identity = 57/170 (33.53%), Postives = 69/170 (40.59%), Query Frame = 0 

Query: 5   GSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGTLSLRPL 64
           G+  A G     K  KPK WK+  P+T   L   RDEFWDTAP + GRK           
Sbjct: 21  GTGVALGRNQPLKKEKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRK----------- 80

Query: 65  VKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDALRAAAEA 124
                                                           EIWDAL+AAA A
Sbjct: 81  ------------------------------------------------EIWDALKAAAHA 130

Query: 125 ----DLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 171
               D  LAQAI+D A I +    LT CYDE G +Y+LP Y L+ P N++
Sbjct: 141 FESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMI 130

[Close]
BLAST of CsGy4G021220 vs. TrEMBL
Match: tr|A0A0A0KZH7|A0A0A0KZH7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G626080 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.2e-48
Identity = 111/170 (65.29%), Postives = 111/170 (65.29%), Query Frame = 0 

Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGTLS 60
           MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRK       
Sbjct: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRK------- 60

Query: 61  LRPLVKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDALRA 120
                                                               EIWDALRA
Sbjct: 61  ----------------------------------------------------EIWDALRA 111

Query: 121 AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 171
           AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV
Sbjct: 121 AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 111

[Close]
BLAST of CsGy4G021220 vs. TrEMBL
Match: tr|A0A1S3CJZ5|A0A1S3CJZ5_CUCME (ubiquitin domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501821 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.6e-48
Identity = 110/170 (64.71%), Postives = 111/170 (65.29%), Query Frame = 0 

Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGTLS 60
           MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRK       
Sbjct: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRK------- 60

Query: 61  LRPLVKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDALRA 120
                                                               EIWDALRA
Sbjct: 61  ----------------------------------------------------EIWDALRA 111

Query: 121 AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 171
           AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNL+
Sbjct: 121 AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]
BLAST of CsGy4G021220 vs. TrEMBL
Match: tr|A5AGQ0|A5AGQ0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0014g01000 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 101/170 (59.41%), Postives = 108/170 (63.53%), Query Frame = 0 

Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGTLS 60
           MGCAGSSQ KGDG+VKKIRKPKPWKNPQP+TKT L++MRDEFWDTAPHYGG+K       
Sbjct: 1   MGCAGSSQTKGDGTVKKIRKPKPWKNPQPLTKTQLMQMRDEFWDTAPHYGGQK------- 60

Query: 61  LRPLVKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDALRA 120
                                                               EIWDALRA
Sbjct: 61  ----------------------------------------------------EIWDALRA 111

Query: 121 AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 171
           AAEADLTLAQAIVDSAG+IVQSADLTICYDERGAKYELP YVLSEPTNL+
Sbjct: 121 AAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPHYVLSEPTNLI 111

[Close]
BLAST of CsGy4G021220 vs. TrEMBL
Match: tr|A0A2C9UEP2|A0A2C9UEP2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G096700 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.4e-44
Identity = 100/170 (58.82%), Postives = 108/170 (63.53%), Query Frame = 0 

Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGTLS 60
           MGCAGSSQAKGDG+VKKIRKPKPWK+PQPITK+ L++MRDEFWDTAPHYGGRK       
Sbjct: 1   MGCAGSSQAKGDGAVKKIRKPKPWKHPQPITKSQLIQMRDEFWDTAPHYGGRK------- 60

Query: 61  LRPLVKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDALRA 120
                                                               EIWDALRA
Sbjct: 61  ----------------------------------------------------EIWDALRA 111

Query: 121 AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 171
           AAEADL LAQAIVDSAG+IVQ+ DLTICYDERGAKYELPKYVLSEPTNL+
Sbjct: 121 AAEADLALAQAIVDSAGVIVQNVDLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]
BLAST of CsGy4G021220 vs. TrEMBL
Match: tr|G7ITE8|G7ITE8_MEDTR (Ubiquitin domain protein OS=Medicago truncatula OX=3880 GN=11405273 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.2e-44
Identity = 98/170 (57.65%), Postives = 109/170 (64.12%), Query Frame = 0 

Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKDRQGTLS 60
           MGCAGSSQAK DG+VKKIRKPKPWK+PQPITKT L+++RDEFWDTAPHYGGRK       
Sbjct: 1   MGCAGSSQAKADGTVKKIRKPKPWKHPQPITKTQLIQLRDEFWDTAPHYGGRK------- 60

Query: 61  LRPLVKLPYSSAECTSSMPLICIKMLCFNVCPIRGVHIRAETIKKNLILWALEIWDALRA 120
                                                               EIWDALRA
Sbjct: 61  ----------------------------------------------------EIWDALRA 111

Query: 121 AAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 171
           AAEADL+LAQAIVDSAG+IVQS+DLT+CYDERGAKYELPKYVLSEPTN++
Sbjct: 121 AAEADLSLAQAIVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNMI 111

The following BLAST results are available for this feature:
BLAST of CsGy4G021220 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146021.11.8e-4865.29PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis sativus] >KGN5505... [more]
XP_008463752.12.4e-4864.71PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis melo][more]
XP_022144511.13.2e-4561.18ubiquitin domain-containing protein 1-like [Momordica charantia][more]
XP_022941497.11.2e-4460.59ubiquitin domain-containing protein 1-like [Cucurbita moschata] >XP_022981235.1 ... [more]
XP_002285516.11.6e-4459.41PREDICTED: ubiquitin domain-containing protein 1 [Vitis vinifera] >CAN66729.1 hy... [more]
BLAST of CsGy4G021220 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G53400.14.3e-4454.44Ubiquitin domain-containing protein[more]
AT5G45740.17.4e-3646.51Ubiquitin domain-containing protein[more]
AT1G16960.17.7e-3344.44Ubiquitin domain-containing protein[more]
BLAST of CsGy4G021220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q4V8W7|UBTD1_DANRE9.0e-1533.91Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1[more]
sp|Q6GL38|UBTD1_XENTR2.6e-1433.72Ubiquitin domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=ubtd1 PE=... [more]
sp|Q6DG43|UBTD2_DANRE3.4e-1434.12Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1[more]
sp|Q5EAE3|UBTD2_BOVIN1.7e-1333.53Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1[more]
sp|Q8WUN7|UBTD2_HUMAN1.7e-1333.53Ubiquitin domain-containing protein 2 OS=Homo sapiens OX=9606 GN=UBTD2 PE=1 SV=2[more]
BLAST of CsGy4G021220 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZH7|A0A0A0KZH7_CUCSA1.2e-4865.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G626080 PE=4 SV=1[more]
tr|A0A1S3CJZ5|A0A1S3CJZ5_CUCME1.6e-4864.71ubiquitin domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC1035018... [more]
tr|A5AGQ0|A5AGQ0_VITVI1.1e-4459.41Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0014g01000 PE=4 SV=... [more]
tr|A0A2C9UEP2|A0A2C9UEP2_MANES2.4e-4458.82Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G096700 PE=4 SV=... [more]
tr|G7ITE8|G7ITE8_MEDTR5.2e-4457.65Ubiquitin domain protein OS=Medicago truncatula OX=3880 GN=11405273 PE=2 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR032752DC-UbP/UBTD2_N
IPR038169DC-UbP/UBTD2_N_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0043130 ubiquitin binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G021220.1CsGy4G021220.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038169DC-UbP/UBTD2, N-terminal domain superfamilyGENE3DG3DSA:1.20.225.20coord: 111..163
e-value: 1.8E-17
score: 65.4
IPR032752DC-UbP/UBTD2, N-terminal domainPFAMPF16455UBDcoord: 112..170
e-value: 3.8E-20
score: 72.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availablePANTHERPTHR13609:SF13SUBFAMILY NOT NAMEDcoord: 1..58
coord: 113..170
NoneNo IPR availablePANTHERPTHR13609UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATEDcoord: 1..58
coord: 113..170

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy4G021220Csa4G626080Cucumber (Chinese Long) v2cgybcuB166
CsGy4G021220Csa4G083480Cucumber (Chinese Long) v2cgybcuB170
CsGy4G021220MELO3C025647Melon (DHL92) v3.5.1cgybmeB254
CsGy4G021220ClCG11G017380Watermelon (Charleston Gray)cgybwcgB259
CsGy4G021220ClCG07G010180Watermelon (Charleston Gray)cgybwcgB307
CsGy4G021220CSPI04G22780Wild cucumber (PI 183967)cgybcpiB169
CsGy4G021220CSPI04G07920Wild cucumber (PI 183967)cgybcpiB173
CsGy4G021220CmaCh16G004320Cucurbita maxima (Rimu)cgybcmaB500
CsGy4G021220CmaCh01G012510Cucurbita maxima (Rimu)cgybcmaB515
CsGy4G021220CmoCh01G013080Cucurbita moschata (Rifu)cgybcmoB484
CsGy4G021220Lsi07G002840Bottle gourd (USVL1VR-Ls)cgyblsiB281
CsGy4G021220Lsi04G020030Bottle gourd (USVL1VR-Ls)cgyblsiB263
CsGy4G021220Cp4.1LG02g02110Cucurbita pepo (Zucchini)cgybcpeB540
CsGy4G021220Cp4.1LG14g03530Cucurbita pepo (Zucchini)cgybcpeB490
CsGy4G021220MELO3C025647.2Melon (DHL92) v3.6.1cgybmedB252
CsGy4G021220CsaV3_4G008140Cucumber (Chinese Long) v3cgybcucB173
CsGy4G021220CsaV3_4G033020Cucumber (Chinese Long) v3cgybcucB171
CsGy4G021220Cla97C11G223470Watermelon (97103) v2cgybwmbB265
CsGy4G021220Cla97C07G136860Watermelon (97103) v2cgybwmbB310
CsGy4G021220Bhi09G002880Wax gourdcgybwgoB398
CsGy4G021220Carg11362Silver-seed gourdcarcgybB0653
CsGy4G021220Carg14738Silver-seed gourdcarcgybB0323
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsGy4G021220CsGy4G007790Cucumber (Gy14) v2cgybcgybB120
The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G021220Cucurbita maxima (Rimu)cgybcmaB470
CsGy4G021220Cucurbita maxima (Rimu)cgybcmaB482
CsGy4G021220Cucurbita moschata (Rifu)cgybcmoB437
CsGy4G021220Cucurbita moschata (Rifu)cgybcmoB452
CsGy4G021220Cucurbita pepo (Zucchini)cgybcpeB566
CsGy4G021220Bottle gourd (USVL1VR-Ls)cgyblsiB252
CsGy4G021220Watermelon (97103) v1cgybwmB326