CsGy4G020020 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G020020
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Location	Chr4 : 26890531 .. 26893594 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCAAGAAAAAATAATTATGTATTTTTTATTATATTGGAGTTAACATATAAATAAAAAATTACACAAATGAAAATAATACAATTTTTTTTTTCCAAATAATCATTCTTCCAAACAATAATTATAAATAATCTTCGTAATCATTTCACTTGATCCATCTCCTATCCTATCCTTTCCTCCACTTAATCCACCATTTTTCTTATTCCTTTCCTCCCTTGCTCATTTCCTTTCCCCAAATGGCCCTTTGAGAAAAACCCGCGTATTGTCAATGTAAGTGCGTGTTGTAACGCAATATGAAGGGAGCGTGAGATTCGAAGAGGGTTGGATAACGAGAAGTGGAGGGTCTGGTCGAGAGAGGAGCCAAGTCATTTGAACAAAAGCTTCACAAGGAAAAACGGGTTATCTATTACAAAACCCAACCACCCTAGTACTGAGATTTCAATTTTCAGCTCTTCAAGATTCATTGCTTTTCGAAGTCGAAGGGAGGTATTCGCTTTGCGATTGATTTCTCATTCACTGCATGTTATGGTTTTTTCAATCTATTTATCTTCTGCTTATAATTTCATTTGATTATACCGAGTTTTAGACGATTGAAGAAGTTCCTATAACATGGCGTTGATTTGAGAGTTCTGGTTCTGATATTAAATGCCAAAAAGAGAGCGATTCTTGTGAAGAAGTGGGATTCTTCTGAGTTTCTTTCACTCAATGGCGACTCTGCTCAATACAGTTTCTCCAATTACAAACCCGTCACCAGAAACCACAAGAAGAGGATGTGGGTTCTTTTCCCATATCCCAAATATCCAGAAGCTCTCACTTAACAAGGGATTTTCTAAAGTTTTAGCATCAACCCAGATTACCATTTCTCCAAAGGACACCATTTTCACACTTCCAAATTGGAAGATTGGGAAACTTGATCAAAAGAGTAAAGAACTTAGACTTAATGATGCTTTTTTTCATTTAGAGTTCATGGTTGAGAAGGGGCAAAAGCCTGATGTATTTCAAGCAACTCAGTTATTGTATGATCTCTGTAAGACATGTAAGATGAGAAAAGCTATTAAGGTAATGGAGATGATGATTGGGTCTGGAATCATTCCAGATGCAGCATCTTATACCTTTTTGGTTAGTTCTTTGTGTAGAAAAGGGAATGTTGGTTATGCAATGCAACTAGTGGACAAAATGGAGGAATATGGTTATCCTACTAACACTGCTACTTATAATTCACTTGTGAGAGGGCTTTGTATGCATGGAAACTTGACTCAGAGCTTGCAACTTTTAGACAGATTAATCCAGAAGGGGTTGGTTCCTAATGCTTATACATACTCTTTTTTGCTTGAAGCTGCATACAAGGAAAGAGGAGCTGATGAAGCAAGTAAGCTTTTGGATGAGATAATTGCAAAGGGTGGGAAACCTAACTTGGTTAGCTACAATGTTTTGTTGACTGGGTTGTGCAAAGAAGGTAGGACAGAGGATGCCATGCAGTTATTTAGGGAATTGCCTTCTAAGGGATTCAGTCCAAATGTTGTCAGTTATAATATCTTGCTAAGGAGTTTGTGCAATGAAGGGAGGTGGGAAGAGGCAAACGTGCTTCTAGCTGAAATGGATGGCGATGAACGATCCCCTTCAACTGTCACTTACAATATATTGATTGGTTCACTTACTCTTCATGGCAGAACAGAACATGCTCTTGAGGTTTTGGAAGAGATGATTAGGGCACGATTCAAGCCAACAGCTTCTAGCTACAATCCGATAATTGCTCGTCTTTGCAAAGATAGGAAAGTAGATCTTGTTGTAAAGTGTCTGGACCAAATGATGTATAGGCATTGCAATCCGAATGAAGGAACATACAATGCCATTGCTACACTTTGTGAAGAGGGTATGGTTCAAGAAGCATTCTCCATTATACAGAGTTTGGGCAACAAGCAACATTTCTCTACTCAAGAATTCTATAAAATTGTTATTACCAGCCTGTGTCGTAAAGGAAACACATATCCAGCATTCCAGCTTCTCTATGAAATGACAAAGTATGGGTTTACACCCGATTCTTTTACCTATTCGTCTTTGATCCGAGGGTTATGCATGGAGGGTATGTTGAATGAGGCAATTGAAATATTCAGTGTAATGGAGGAAAATATCAAGCTTGATACTGAGAATTACAATTCACTCATTCTTGGTTGCTGCAAATCTCGAAGAACTGATTTGGCCTTGGACGTATTCGAAATAATGGTTGGTAAAGGTTATCTGGCCAATGAAACGACATACACCATTCTTGTGGAAGGTATCATCCATGAAAAAGAGATGGATCTAGCAACCGAAGTACTGAGAGAGTTGCAACTGAGGGATGTTATAAATCAAAGCACAGTGGAAAGACTTGTAATGCAGTATGACTTAAATGAATTGCCATTGTGATAATTTCAGTTGACTTGCTACCAGCAATTGGAAACCTGGCAGACAGTTCATCATGAAGATCAAGTAATTGTTAGTATGACAAAGAGAAAAAAAAAAAAAAGTAAAGAAAAAGGTACTTCCACATCCGTCTCATCCCATATTTTGTTTGATCTTATTACTTTGTCTGACAACTGAAAGCTTGTGAATCTGACAAGAGGGTGCTGTTTTTTTTAGTTGCATTATTTACAACTGAGTACATGTTTTTTAGTTCACTATGCTTCTTATATGTACATAAAATTACTCCATCCAGTTCTTTACTTTCTCTTTCTATTGAGTTTTTTTGCCCATCTGTGGCCAATTTCATTCTTACAAAAGTTTTGGTAGTTGAAAGGAAACCTTATGCCAATGTGTTCTGGTTCCCAATTCCTGTCTCTTTATTGCTTCACATTCATAGAGTTCTCTAGACCTTGCCTTTAATGCCTGACGTTTTGAATTATGGTAAACAGTCAGATGAAAGTGAGGAAAGGGAAGAATCTAAGCTTTGAGATCAATGCATTTTAAGCTTGTAGGTGAGTTTCATTATGGGTGCAATAGAACTTGAAGGACATTTTAGTTTTTTTTTTTTTTTTGGGTTAAATTACAAGTTTAGTTCCTCAACTTTTGTGTTCCCCTTCCTAAAC

mRNA sequence

TTCCAAGAAAAAATAATTATGTATTTTTTATTATATTGGAGTTAACATATAAATAAAAAATTACACAAATGAAAATAATACAATTTTTTTTTTCCAAATAATCATTCTTCCAAACAATAATTATAAATAATCTTCGTAATCATTTCACTTGATCCATCTCCTATCCTATCCTTTCCTCCACTTAATCCACCATTTTTCTTATTCCTTTCCTCCCTTGCTCATTTCCTTTCCCCAAATGGCCCTTTGAGAAAAACCCGCGTATTGTCAATGTAAGTGCGTGTTGTAACGCAATATGAAGGGAGCGTGAGATTCGAAGAGGGTTGGATAACGAGAAGTGGAGGGTCTGGTCGAGAGAGGAGCCAAGTCATTTGAACAAAAGCTTCACAAGGAAAAACGGGTTATCTATTACAAAACCCAACCACCCTAGTACTGAGATTTCAATTTTCAGCTCTTCAAGATTCATTGCTTTTCGAAGTCGAAGGGAGACGATTGAAGAAGTTCCTATAACATGGCGTTGATTTGAGAGTTCTGGTTCTGATATTAAATGCCAAAAAGAGAGCGATTCTTGTGAAGAAGTGGGATTCTTCTGAGTTTCTTTCACTCAATGGCGACTCTGCTCAATACAGTTTCTCCAATTACAAACCCGTCACCAGAAACCACAAGAAGAGGATGTGGGTTCTTTTCCCATATCCCAAATATCCAGAAGCTCTCACTTAACAAGGGATTTTCTAAAGTTTTAGCATCAACCCAGATTACCATTTCTCCAAAGGACACCATTTTCACACTTCCAAATTGGAAGATTGGGAAACTTGATCAAAAGAGTAAAGAACTTAGACTTAATGATGCTTTTTTTCATTTAGAGTTCATGGTTGAGAAGGGGCAAAAGCCTGATGTATTTCAAGCAACTCAGTTATTGTATGATCTCTGTAAGACATGTAAGATGAGAAAAGCTATTAAGGTAATGGAGATGATGATTGGGTCTGGAATCATTCCAGATGCAGCATCTTATACCTTTTTGGTTAGTTCTTTGTGTAGAAAAGGGAATGTTGGTTATGCAATGCAACTAGTGGACAAAATGGAGGAATATGGTTATCCTACTAACACTGCTACTTATAATTCACTTGTGAGAGGGCTTTGTATGCATGGAAACTTGACTCAGAGCTTGCAACTTTTAGACAGATTAATCCAGAAGGGGTTGGTTCCTAATGCTTATACATACTCTTTTTTGCTTGAAGCTGCATACAAGGAAAGAGGAGCTGATGAAGCAAGTAAGCTTTTGGATGAGATAATTGCAAAGGGTGGGAAACCTAACTTGGTTAGCTACAATGTTTTGTTGACTGGGTTGTGCAAAGAAGGTAGGACAGAGGATGCCATGCAGTTATTTAGGGAATTGCCTTCTAAGGGATTCAGTCCAAATGTTGTCAGTTATAATATCTTGCTAAGGAGTTTGTGCAATGAAGGGAGGTGGGAAGAGGCAAACGTGCTTCTAGCTGAAATGGATGGCGATGAACGATCCCCTTCAACTGTCACTTACAATATATTGATTGGTTCACTTACTCTTCATGGCAGAACAGAACATGCTCTTGAGGTTTTGGAAGAGATGATTAGGGCACGATTCAAGCCAACAGCTTCTAGCTACAATCCGATAATTGCTCGTCTTTGCAAAGATAGGAAAGTAGATCTTGTTGTAAAGTGTCTGGACCAAATGATGTATAGGCATTGCAATCCGAATGAAGGAACATACAATGCCATTGCTACACTTTGTGAAGAGGGTATGGTTCAAGAAGCATTCTCCATTATACAGAGTTTGGGCAACAAGCAACATTTCTCTACTCAAGAATTCTATAAAATTGTTATTACCAGCCTGTGTCGTAAAGGAAACACATATCCAGCATTCCAGCTTCTCTATGAAATGACAAAGTATGGGTTTACACCCGATTCTTTTACCTATTCGTCTTTGATCCGAGGGTTATGCATGGAGGGTATGTTGAATGAGGCAATTGAAATATTCAGTGTAATGGAGGAAAATATCAAGCTTGATACTGAGAATTACAATTCACTCATTCTTGGTTGCTGCAAATCTCGAAGAACTGATTTGGCCTTGGACGTATTCGAAATAATGGTTGGTAAAGGTTATCTGGCCAATGAAACGACATACACCATTCTTGTGGAAGGTATCATCCATGAAAAAGAGATGGATCTAGCAACCGAAGTACTGAGAGAGTTGCAACTGAGGGATGTTATAAATCAAAGCACAGTGGAAAGACTTGTAATGCAGTATGACTTAAATGAATTGCCATTGTGATAATTTCAGTTGACTTGCTACCAGCAATTGGAAACCTGGCAGACAGTTCATCATGAAGATCAAGTAATTGTTAGTATGACAAAGAGAAAAAAAAAAAAAAGTAAAGAAAAAGGTACTTCCACATCCGTCTCATCCCATATTTTGTTTGATCTTATTACTTTGTCTGACAACTGAAAGCTTGTGAATCTGACAAGAGGGTGCTGTTTTTTTTAGTTGCATTATTTACAACTGAGTACATGTTTTTTAGTTCACTATGCTTCTTATATGTACATAAAATTACTCCATCCAGTTCTTTACTTTCTCTTTCTATTGAGTTTTTTTGCCCATCTGTGGCCAATTTCATTCTTACAAAAGTTTTGGTAGTTGAAAGGAAACCTTATGCCAATGTGTTCTGGTTCCCAATTCCTGTCTCTTTATTGCTTCACATTCATAGAGTTCTCTAGACCTTGCCTTTAATGCCTGACGTTTTGAATTATGGTAAACAGTCAGATGAAAGTGAGGAAAGGGAAGAATCTAAGCTTTGAGATCAATGCATTTTAAGCTTGTAGGTGAGTTTCATTATGGGTGCAATAGAACTTGAAGGACATTTTAGTTTTTTTTTTTTTTTTGGGTTAAATTACAAGTTTAGTTCCTCAACTTTTGTGTTCCCCTTCCTAAAC

Coding sequence (CDS)

ATGGCGACTCTGCTCAATACAGTTTCTCCAATTACAAACCCGTCACCAGAAACCACAAGAAGAGGATGTGGGTTCTTTTCCCATATCCCAAATATCCAGAAGCTCTCACTTAACAAGGGATTTTCTAAAGTTTTAGCATCAACCCAGATTACCATTTCTCCAAAGGACACCATTTTCACACTTCCAAATTGGAAGATTGGGAAACTTGATCAAAAGAGTAAAGAACTTAGACTTAATGATGCTTTTTTTCATTTAGAGTTCATGGTTGAGAAGGGGCAAAAGCCTGATGTATTTCAAGCAACTCAGTTATTGTATGATCTCTGTAAGACATGTAAGATGAGAAAAGCTATTAAGGTAATGGAGATGATGATTGGGTCTGGAATCATTCCAGATGCAGCATCTTATACCTTTTTGGTTAGTTCTTTGTGTAGAAAAGGGAATGTTGGTTATGCAATGCAACTAGTGGACAAAATGGAGGAATATGGTTATCCTACTAACACTGCTACTTATAATTCACTTGTGAGAGGGCTTTGTATGCATGGAAACTTGACTCAGAGCTTGCAACTTTTAGACAGATTAATCCAGAAGGGGTTGGTTCCTAATGCTTATACATACTCTTTTTTGCTTGAAGCTGCATACAAGGAAAGAGGAGCTGATGAAGCAAGTAAGCTTTTGGATGAGATAATTGCAAAGGGTGGGAAACCTAACTTGGTTAGCTACAATGTTTTGTTGACTGGGTTGTGCAAAGAAGGTAGGACAGAGGATGCCATGCAGTTATTTAGGGAATTGCCTTCTAAGGGATTCAGTCCAAATGTTGTCAGTTATAATATCTTGCTAAGGAGTTTGTGCAATGAAGGGAGGTGGGAAGAGGCAAACGTGCTTCTAGCTGAAATGGATGGCGATGAACGATCCCCTTCAACTGTCACTTACAATATATTGATTGGTTCACTTACTCTTCATGGCAGAACAGAACATGCTCTTGAGGTTTTGGAAGAGATGATTAGGGCACGATTCAAGCCAACAGCTTCTAGCTACAATCCGATAATTGCTCGTCTTTGCAAAGATAGGAAAGTAGATCTTGTTGTAAAGTGTCTGGACCAAATGATGTATAGGCATTGCAATCCGAATGAAGGAACATACAATGCCATTGCTACACTTTGTGAAGAGGGTATGGTTCAAGAAGCATTCTCCATTATACAGAGTTTGGGCAACAAGCAACATTTCTCTACTCAAGAATTCTATAAAATTGTTATTACCAGCCTGTGTCGTAAAGGAAACACATATCCAGCATTCCAGCTTCTCTATGAAATGACAAAGTATGGGTTTACACCCGATTCTTTTACCTATTCGTCTTTGATCCGAGGGTTATGCATGGAGGGTATGTTGAATGAGGCAATTGAAATATTCAGTGTAATGGAGGAAAATATCAAGCTTGATACTGAGAATTACAATTCACTCATTCTTGGTTGCTGCAAATCTCGAAGAACTGATTTGGCCTTGGACGTATTCGAAATAATGGTTGGTAAAGGTTATCTGGCCAATGAAACGACATACACCATTCTTGTGGAAGGTATCATCCATGAAAAAGAGATGGATCTAGCAACCGAAGTACTGAGAGAGTTGCAACTGAGGGATGTTATAAATCAAAGCACAGTGGAAAGACTTGTAATGCAGTATGACTTAAATGAATTGCCATTGTGA

Protein sequence

MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFTLPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCKTCKMRKAIKVMEMMIGSGIIPDAASYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTATYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTEDAMQLFRELPSKGFSPNVVSYNILLRSLCNEGRWEEANVLLAEMDGDERSPSTVTYNILIGSLTLHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCKDRKVDLVVKCLDQMMYRHCNPNEGTYNAIATLCEEGMVQEAFSIIQSLGNKQHFSTQEFYKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVMEENIKLDTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLANETTYTILVEGIIHEKEMDLATEVLRELQLRDVINQSTVERLVMQYDLNELPL

Homology

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BLAST of CsGy4G020020 vs. NCBI nr
Match: XP_011653982.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Cucumis sativus] >KGN54942.1 hypothetical protein Csa_4G613170 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 6.7e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60
           MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT
Sbjct: 1   MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60

Query: 61  LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 110
           LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCK
Sbjct: 61  LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 109

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BLAST of CsGy4G020020 vs. NCBI nr
Match: XP_008444287.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Cucumis melo] >ADN33755.1 pentatricopeptide repeat-containing protein [Cucumis melo subsp. melo])

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-51
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60
           MATLLNTVSPITN SPETTRRGCGFFSHIPN+QKLSLNKGFSKVLASTQITISPKDTIFT
Sbjct: 1   MATLLNTVSPITNTSPETTRRGCGFFSHIPNLQKLSLNKGFSKVLASTQITISPKDTIFT 60

Query: 61  LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 110
           LPNWK GK++QKSKELRL DAFFHLEFMVEKGQKPDVFQATQLLYDLCK
Sbjct: 61  LPNWKTGKVEQKSKELRLTDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 109

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BLAST of CsGy4G020020 vs. NCBI nr
Match: XP_022141778.1 (pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Momordica charantia])

HSP 1 Score: 206.1 bits (523), Expect = 3.2e-49
Identity = 97/109 (88.99%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60
           MATLLNTVSPI NPSPET+RRGCGFFSHIPN+ KLSLNKGFSKVLAST ITISPKDTIFT
Sbjct: 1   MATLLNTVSPIANPSPETSRRGCGFFSHIPNLHKLSLNKGFSKVLASTHITISPKDTIFT 60

Query: 61  LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 110
           LPNW+ GK+DQKS++LRLNDAF HLEFMV KGQKPDVFQATQLLYDLCK
Sbjct: 61  LPNWRTGKVDQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCK 109

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BLAST of CsGy4G020020 vs. NCBI nr
Match: XP_022940117.1 (pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Cucurbita moschata])

HSP 1 Score: 196.4 bits (498), Expect = 2.5e-46
Identity = 94/109 (86.24%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60
           MATLLNTVSPITNPSPETTRRG GFFSHIPN+ KLSL+KGFSKVLASTQ+TISPKDTIFT
Sbjct: 1   MATLLNTVSPITNPSPETTRRGYGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIFT 60

Query: 61  LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 110
           LPNW+IGK DQK++E RLNDAF +LE++V KGQKPDVFQATQLLYDLCK
Sbjct: 61  LPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCK 109

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BLAST of CsGy4G020020 vs. NCBI nr
Match: XP_022981090.1 (pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Cucurbita maxima])

HSP 1 Score: 196.4 bits (498), Expect = 2.5e-46
Identity = 94/109 (86.24%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60
           MATLLNTVSPITNPSPETTRRG GFFSHIPN+ KLSL+KGFSKVLASTQ+TISPKDTIFT
Sbjct: 1   MATLLNTVSPITNPSPETTRRGYGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIFT 60

Query: 61  LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 110
           LPNW+IGK DQK++E RLNDAF +LE++V KGQKPDVFQATQLLYDLCK
Sbjct: 61  LPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCK 109

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BLAST of CsGy4G020020 vs. TAIR10
Match: AT1G79080.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 96.7 bits (239), Expect = 5.0e-20
Identity = 56/119 (47.06%), Postives = 78/119 (65.55%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGCGFFSHIPN--IQKLSLNKGFSKVLASTQITISPKDTI 60
           M+TLLN+V  + +P   + R+  GF SHIP+  +   S++KG ++VLASTQIT+SPKD+ 
Sbjct: 1   MSTLLNSVLSMASPE-SSPRKAVGFVSHIPSGFLHFSSVSKGVARVLASTQITLSPKDSA 60

Query: 61  FTL------PNWKIGKL--DQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 110
           FT+      P+   G    D +S E  L+D+F HLE +V  G KP+V  +TQLLYDLCK
Sbjct: 61  FTITGSSWKPDLDSGSFSDDPRSDEPNLSDSFSHLESLVTGGHKPNVAHSTQLLYDLCK 118

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BLAST of CsGy4G020020 vs. Swiss-Prot
Match: sp|A3KPF8|PP131_ARATH (Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g79080 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.0e-19
Identity = 56/119 (47.06%), Postives = 78/119 (65.55%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGCGFFSHIPN--IQKLSLNKGFSKVLASTQITISPKDTI 60
           M+TLLN+V  + +P   + R+  GF SHIP+  +   S++KG ++VLASTQIT+SPKD+ 
Sbjct: 1   MSTLLNSVLSMASPE-SSPRKAVGFVSHIPSGFLHFSSVSKGVARVLASTQITLSPKDSA 60

Query: 61  FTL------PNWKIGKL--DQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 110
           FT+      P+   G    D +S E  L+D+F HLE +V  G KP+V  +TQLLYDLCK
Sbjct: 61  FTITGSSWKPDLDSGSFSDDPRSDEPNLSDSFSHLESLVTGGHKPNVAHSTQLLYDLCK 118

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BLAST of CsGy4G020020 vs. TrEMBL
Match: tr|A0A0A0L2W8|A0A0A0L2W8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G613170 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 4.4e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60
           MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT
Sbjct: 1   MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60

Query: 61  LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 110
           LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCK
Sbjct: 61  LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 109

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BLAST of CsGy4G020020 vs. TrEMBL
Match: tr|A0A1S3BA04|A0A1S3BA04_CUCME (pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487653 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 7.8e-52
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60
           MATLLNTVSPITN SPETTRRGCGFFSHIPN+QKLSLNKGFSKVLASTQITISPKDTIFT
Sbjct: 1   MATLLNTVSPITNTSPETTRRGCGFFSHIPNLQKLSLNKGFSKVLASTQITISPKDTIFT 60

Query: 61  LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 110
           LPNWK GK++QKSKELRL DAFFHLEFMVEKGQKPDVFQATQLLYDLCK
Sbjct: 61  LPNWKTGKVEQKSKELRLTDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 109

[Close]

BLAST of CsGy4G020020 vs. TrEMBL
Match: tr|E5GBB3|E5GBB3_CUCME (Pentatricopeptide repeat-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 7.8e-52
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60
           MATLLNTVSPITN SPETTRRGCGFFSHIPN+QKLSLNKGFSKVLASTQITISPKDTIFT
Sbjct: 1   MATLLNTVSPITNTSPETTRRGCGFFSHIPNLQKLSLNKGFSKVLASTQITISPKDTIFT 60

Query: 61  LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 110
           LPNWK GK++QKSKELRL DAFFHLEFMVEKGQKPDVFQATQLLYDLCK
Sbjct: 61  LPNWKTGKVEQKSKELRLTDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 109

[Close]

BLAST of CsGy4G020020 vs. TrEMBL
Match: tr|A0A061FH66|A0A061FH66_THECC (Pentatricopeptide repeat (PPR) superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_032450 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 8.7e-43
Identity = 85/109 (77.98%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60
           MATLLN++SP+TNPSPETTR+ CGFF  IPN+   SLNKGF++VLA+TQITISPKD++FT
Sbjct: 1   MATLLNSMSPMTNPSPETTRKTCGFFYQIPNLHSFSLNKGFTRVLATTQITISPKDSVFT 60

Query: 61  LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 110
           LPNWK GK D KS+ELRLNDAFFH+E+MV KGQKPDV QATQLLYDLCK
Sbjct: 61  LPNWKTGKNDTKSRELRLNDAFFHMEYMVGKGQKPDVAQATQLLYDLCK 109

[Close]

BLAST of CsGy4G020020 vs. TrEMBL
Match: tr|A0A2I4F0I9|A0A2I4F0I9_9ROSI (pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Juglans regia OX=51240 GN=LOC108994413 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-41
Identity = 87/110 (79.09%), Postives = 96/110 (87.27%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRG-CGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIF 60
           MAT+LN+VSP+ NPSPE  RRG  GFFSHIPN+   SLNKGFSKVLASTQITISPKDT+F
Sbjct: 1   MATVLNSVSPVGNPSPEGIRRGNYGFFSHIPNLHTFSLNKGFSKVLASTQITISPKDTVF 60

Query: 61  TLPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 110
           TLPNW+ GK D +S+ELRLNDAF HLE+MV KGQKPDV QATQLLYDLCK
Sbjct: 61  TLPNWRYGKSDSRSRELRLNDAFLHLEYMVRKGQKPDVAQATQLLYDLCK 110

The following BLAST results are available for this feature:

BLAST of CsGy4G020020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653982.1	6.7e-55	100.00	PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic ...	[more]
XP_008444287.1	1.2e-51	94.50	PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic ...	[more]
XP_022141778.1	3.2e-49	88.99	pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Momordica ...	[more]
XP_022940117.1	2.5e-46	86.24	pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Cucurbita ...	[more]
XP_022981090.1	2.5e-46	86.24	pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Cucurbita ...	[more]

BLAST of CsGy4G020020 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79080.1	5.0e-20	47.06	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of CsGy4G020020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A3KPF8\|PP131_ARATH	9.0e-19	47.06	Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidop...	[more]

BLAST of CsGy4G020020 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L2W8\|A0A0A0L2W8_CUCSA	4.4e-55	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G613170 PE=4 SV=1	[more]
tr\|A0A1S3BA04\|A0A1S3BA04_CUCME	7.8e-52	94.50	pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Cucumis ...	[more]
tr\|E5GBB3\|E5GBB3_CUCME	7.8e-52	94.50	Pentatricopeptide repeat-containing protein OS=Cucumis melo subsp. melo OX=41267...	[more]
tr\|A0A061FH66\|A0A061FH66_THECC	8.7e-43	77.98	Pentatricopeptide repeat (PPR) superfamily protein OS=Theobroma cacao OX=3641 GN...	[more]
tr\|A0A2I4F0I9\|A0A2I4F0I9_9ROSI	1.2e-41	79.09	pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Juglans ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G020020.1	CsGy4G020020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 230..299 e-value: 4.0E-23 score: 83.9 coord: 338..407 e-value: 2.1E-12 score: 48.9 coord: 300..337 e-value: 8.8E-6 score: 27.3
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 411..563 e-value: 2.1E-32 score: 114.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 67..229 e-value: 2.1E-35 score: 124.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 479..524 e-value: 1.2E-9 score: 38.1 coord: 235..284 e-value: 3.3E-17 score: 62.3 coord: 305..347 e-value: 1.6E-8 score: 34.4 coord: 130..178 e-value: 2.9E-10 score: 40.1
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 441..473 e-value: 1.7E-11 score: 43.5
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 107..128 e-value: 0.62 score: 10.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 344..377 e-value: 1.3E-4 score: 19.9 coord: 447..475 e-value: 2.4E-6 score: 25.4 coord: 273..305 e-value: 1.9E-6 score: 25.7 coord: 238..272 e-value: 2.5E-10 score: 37.9 coord: 308..341 e-value: 1.8E-8 score: 32.1 coord: 169..202 e-value: 6.1E-7 score: 27.2 coord: 107..132 e-value: 0.0016 score: 16.5 coord: 134..164 e-value: 9.3E-5 score: 20.4 coord: 483..514 e-value: 7.0E-6 score: 23.9 coord: 414..446 e-value: 0.0013 score: 16.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 445..475 score: 11.093
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 514..548 score: 7.783
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 410..444 score: 9.493
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 131..165 score: 10.676
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 96..130 score: 8.517
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 306..340 score: 11.729
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 201..235 score: 9.262
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 479..513 score: 11.203
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 341..375 score: 9.131
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 271..305 score: 11.411
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 236..270 score: 14.009
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 166..200 score: 12.266
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..557
None	No IPR available	PANTHER	PTHR24015:SF765	SUBFAMILY NOT NAMED	coord: 1..557
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 72..269

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G020020	Cla023223	Watermelon (97103) v1	cgybwmB326
CsGy4G020020	ClCG11G016340	Watermelon (Charleston Gray)	cgybwcgB259
CsGy4G020020	CSPI04G21480	Wild cucumber (PI 183967)	cgybcpiB169
CsGy4G020020	CmaCh09G007440	Cucurbita maxima (Rimu)	cgybcmaB470
CsGy4G020020	CmaCh01G013010	Cucurbita maxima (Rimu)	cgybcmaB505
CsGy4G020020	CmoCh01G013560	Cucurbita moschata (Rifu)	cgybcmoB477
CsGy4G020020	CmoCh09G007360	Cucurbita moschata (Rifu)	cgybcmoB437
CsGy4G020020	Lsi04G018710	Bottle gourd (USVL1VR-Ls)	cgyblsiB263
CsGy4G020020	Cp4.1LG06g05720	Cucurbita pepo (Zucchini)	cgybcpeB566
CsGy4G020020	Cp4.1LG02g02350	Cucurbita pepo (Zucchini)	cgybcpeB547
CsGy4G020020	MELO3C010560.2	Melon (DHL92) v3.6.1	cgybmedB275
CsGy4G020020	CsaV3_4G031810	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G020020	Cla97C11G222300	Watermelon (97103) v2	cgybwmbB265
CsGy4G020020	Bhi09G003026	Wax gourd	cgybwgoB398
CsGy4G020020	Carg14773	Silver-seed gourd	carcgybB0322
CsGy4G020020	Carg20059	Silver-seed gourd	carcgybB1029

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G020020	Cucumber (Chinese Long) v2	cgybcuB166