Carg14773 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14773
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_048 : 1020894 .. 1022597 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTCTGCTGAATACAGTGTCTCCAATTACAAATCCATCTCCAGAAACCACAAGAAGAGGATATGGTTTCTTCTCCCATATCCCAAATCTCCACAAGCTTTCACTTAGCAAGGGATTTTCTAAAGTTCTAGCATCGACGCAGGTTACCATTTCTCCTAAGGACACCATTTTCACACTGCCAAACTGGAGGATTGGGAAGGGCGATCAAAAGAATAGAGAACATAGACTTAATGATGCTTTTTTGAATTTAGAGTACTTGGTAGGGAAGGGCCAAAAGCCCGATGTGTTTCAAGCGACTCAGCTTTTGTATGATCTTTGCAAGGCCAGTAAGCTTAGAAGAGCTATTAAGGTAATGGAGATGATGATTGGCTCTGGAATCATTCCAGATGCTTCTTCTTATACCTTTTTGGTAAGTTCTTTGTGTAAAAGAGGGAATGTTGGTTATGCAATGCAATTAGTGGACAAAATGGAGGAATATGGTTATCCTACGAACACTGTTACTTATAATTCTCTTGTGAGAGGTCTTTGTATGCATGGGAATTTGACTCACAGCTTGCAACTTTTAGACAGACTAATCCAGAAGGGGCTTGTCCCAAATGCATATACATACTCTTTTTTGCTTGAAGCTGCATACAAGGAACGAGGAGCGGATGAAGCTGTTAAGCTTTTGGATGAGATCATTGCCAAGGGTGGGAAGCCTAATTTGGTTAGCTACAATGTTTTATTAACTGGGTTGTGTAAAGAAGGTAGGACAGATGATGCCATCCAGTTATTTAGAGAATTACCTTCAAAGGGATTCAATCCAAATGTTGTCAGTTATAATATCTTGCTAAGGAGTCTATGCTATGAAGGGAGATGGGAGGAGGCAAATGTGCTTCTAGCTGAAATGGACGGTGATGATCGTGCCCCTTCAGCTGTCACTTACAATACATTGATTGGTTCGCTTGCCTTTCATGGCCGAACGGAACATGCCCTTGAGGTTTTGGAAGAGATGATTAGAGCACGGTTCAAGCCCACGGCTTCAAGCTACAACCCGATAATTGCTCGGCTTTGTAGAGATAAGAAAGTAGATCTTGTTGTGAAATGTTTGGACCAAATGATCTATAGGCATTGTAATCCCAATGAAGGAACTTACAATGCCATTGCTACACTTTGTGAAGTGGGAATGGTTCAAGAGGCATTCTCCATCCTCCAAAGTTTGGGCAACAAGCAACATTACTCTACTCAAGAATTCTATAAATCTGTTATTACGAGCTTGTGTCGAAAGGGAAACACATATTCAGCATTCCAACTTCTCTATGAAATGACAAAGTACGGGTTTACTCCCGATTCTTTTGCCTATTCGTCTTTGATCCGGGGGTTATGCATGGAGGGCATGCTTGATGAGGCAATTGAAATATTCAGTGTAATGGAGGAAAATAACTATAAGCCTGATACTGAAAATTACAATTCTCTCATTTTTGGTTGTTGCAAATCTCGAAGAACCGATTTGGCCTTGGAGGTTTTTGAAACAATGGTCAATAAAGGTTACCTGCCCAATGAAACAACATATACCACGCTCGTGGAAGGGATCGTCCACGAGAAACAGATAGATCTAGCAACCAAAGTACTGAGGGAGTTGCAACTCAAGGATGTTATAAGTCAAAGCACAGTAGAAAGACTTGTTATGCAGTATGACCTAAATGAATTACCATTGTGA

mRNA sequence

ATGGCGACTCTGCTGAATACAGTGTCTCCAATTACAAATCCATCTCCAGAAACCACAAGAAGAGGATATGGTTTCTTCTCCCATATCCCAAATCTCCACAAGCTTTCACTTAGCAAGGGATTTTCTAAAGTTCTAGCATCGACGCAGGTTACCATTTCTCCTAAGGACACCATTTTCACACTGCCAAACTGGAGGATTGGGAAGGGCGATCAAAAGAATAGAGAACATAGACTTAATGATGCTTTTTTGAATTTAGAGTACTTGGTAGGGAAGGGCCAAAAGCCCGATGTGTTTCAAGCGACTCAGCTTTTGTATGATCTTTGCAAGGCCAGTAAGCTTAGAAGAGCTATTAAGGTAATGGAGATGATGATTGGCTCTGGAATCATTCCAGATGCTTCTTCTTATACCTTTTTGGTAAGTTCTTTGTGTAAAAGAGGGAATGTTGGTTATGCAATGCAATTAGTGGACAAAATGGAGGAATATGGTTATCCTACGAACACTGTTACTTATAATTCTCTTGTGAGAGGTCTTTGTATGCATGGGAATTTGACTCACAGCTTGCAACTTTTAGACAGACTAATCCAGAAGGGGCTTGTCCCAAATGCATATACATACTCTTTTTTGCTTGAAGCTGCATACAAGGAACGAGGAGCGGATGAAGCTGTTAAGCTTTTGGATGAGATCATTGCCAAGGGTGGGAAGCCTAATTTGGTTAGCTACAATGTTTTATTAACTGGGTTGTGTAAAGAAGGTAGGACAGATGATGCCATCCAGTTATTTAGAGAATTACCTTCAAAGGGATTCAATCCAAATGTTGTCAGTTATAATATCTTGCTAAGGAGTCTATGCTATGAAGGGAGATGGGAGGAGGCAAATGTGCTTCTAGCTGAAATGGACGGTGATGATCGTGCCCCTTCAGCTGTCACTTACAATACATTGATTGGTTCGCTTGCCTTTCATGGCCGAACGGAACATGCCCTTGAGGTTTTGGAAGAGATGATTAGAGCACGGTTCAAGCCCACGGCTTCAAGCTACAACCCGATAATTGCTCGGCTTTGTAGAGATAAGAAAGTAGATCTTGTTGTGAAATGTTTGGACCAAATGATCTATAGGCATTGTAATCCCAATGAAGGAACTTACAATGCCATTGCTACACTTTGTGAAGTGGGAATGGTTCAAGAGGCATTCTCCATCCTCCAAAGTTTGGGCAACAAGCAACATTACTCTACTCAAGAATTCTATAAATCTGTTATTACGAGCTTGTGTCGAAAGGGAAACACATATTCAGCATTCCAACTTCTCTATGAAATGACAAAGTACGGGTTTACTCCCGATTCTTTTGCCTATTCGTCTTTGATCCGGGGGTTATGCATGGAGGGCATGCTTGATGAGGCAATTGAAATATTCAGTGTAATGGAGGAAAATAACTATAAGCCTGATACTGAAAATTACAATTCTCTCATTTTTGGTTGTTGCAAATCTCGAAGAACCGATTTGGCCTTGGAGGTTTTTGAAACAATGGTCAATAAAGGTTACCTGCCCAATGAAACAACATATACCACGCTCGTGGAAGGGATCGTCCACGAGAAACAGATAGATCTAGCAACCAAAGTACTGAGGGAGTTGCAACTCAAGGATGTTATAAGTCAAAGCACAGTAGAAAGACTTGTTATGCAGTATGACCTAAATGAATTACCATTGTGA

Coding sequence (CDS)

ATGGCGACTCTGCTGAATACAGTGTCTCCAATTACAAATCCATCTCCAGAAACCACAAGAAGAGGATATGGTTTCTTCTCCCATATCCCAAATCTCCACAAGCTTTCACTTAGCAAGGGATTTTCTAAAGTTCTAGCATCGACGCAGGTTACCATTTCTCCTAAGGACACCATTTTCACACTGCCAAACTGGAGGATTGGGAAGGGCGATCAAAAGAATAGAGAACATAGACTTAATGATGCTTTTTTGAATTTAGAGTACTTGGTAGGGAAGGGCCAAAAGCCCGATGTGTTTCAAGCGACTCAGCTTTTGTATGATCTTTGCAAGGCCAGTAAGCTTAGAAGAGCTATTAAGGTAATGGAGATGATGATTGGCTCTGGAATCATTCCAGATGCTTCTTCTTATACCTTTTTGGTAAGTTCTTTGTGTAAAAGAGGGAATGTTGGTTATGCAATGCAATTAGTGGACAAAATGGAGGAATATGGTTATCCTACGAACACTGTTACTTATAATTCTCTTGTGAGAGGTCTTTGTATGCATGGGAATTTGACTCACAGCTTGCAACTTTTAGACAGACTAATCCAGAAGGGGCTTGTCCCAAATGCATATACATACTCTTTTTTGCTTGAAGCTGCATACAAGGAACGAGGAGCGGATGAAGCTGTTAAGCTTTTGGATGAGATCATTGCCAAGGGTGGGAAGCCTAATTTGGTTAGCTACAATGTTTTATTAACTGGGTTGTGTAAAGAAGGTAGGACAGATGATGCCATCCAGTTATTTAGAGAATTACCTTCAAAGGGATTCAATCCAAATGTTGTCAGTTATAATATCTTGCTAAGGAGTCTATGCTATGAAGGGAGATGGGAGGAGGCAAATGTGCTTCTAGCTGAAATGGACGGTGATGATCGTGCCCCTTCAGCTGTCACTTACAATACATTGATTGGTTCGCTTGCCTTTCATGGCCGAACGGAACATGCCCTTGAGGTTTTGGAAGAGATGATTAGAGCACGGTTCAAGCCCACGGCTTCAAGCTACAACCCGATAATTGCTCGGCTTTGTAGAGATAAGAAAGTAGATCTTGTTGTGAAATGTTTGGACCAAATGATCTATAGGCATTGTAATCCCAATGAAGGAACTTACAATGCCATTGCTACACTTTGTGAAGTGGGAATGGTTCAAGAGGCATTCTCCATCCTCCAAAGTTTGGGCAACAAGCAACATTACTCTACTCAAGAATTCTATAAATCTGTTATTACGAGCTTGTGTCGAAAGGGAAACACATATTCAGCATTCCAACTTCTCTATGAAATGACAAAGTACGGGTTTACTCCCGATTCTTTTGCCTATTCGTCTTTGATCCGGGGGTTATGCATGGAGGGCATGCTTGATGAGGCAATTGAAATATTCAGTGTAATGGAGGAAAATAACTATAAGCCTGATACTGAAAATTACAATTCTCTCATTTTTGGTTGTTGCAAATCTCGAAGAACCGATTTGGCCTTGGAGGTTTTTGAAACAATGGTCAATAAAGGTTACCTGCCCAATGAAACAACATATACCACGCTCGTGGAAGGGATCGTCCACGAGAAACAGATAGATCTAGCAACCAAAGTACTGAGGGAGTTGCAACTCAAGGATGTTATAAGTCAAAGCACAGTAGAAAGACTTGTTATGCAGTATGACCTAAATGAATTACCATTGTGA

Protein sequence

MATLLNTVSPITNPSPETTRRGYGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIFTLPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCKASKLRRAIKVMEMMIGSGIIPDASSYTFLVSSLCKRGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGNLTHSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEAVKLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTDDAIQLFRELPSKGFNPNVVSYNILLRSLCYEGRWEEANVLLAEMDGDDRAPSAVTYNTLIGSLAFHGRTEHALEVLEEMIRARFKPTASSYNPIIARLCRDKKVDLVVKCLDQMIYRHCNPNEGTYNAIATLCEVGMVQEAFSILQSLGNKQHYSTQEFYKSVITSLCRKGNTYSAFQLLYEMTKYGFTPDSFAYSSLIRGLCMEGMLDEAIEIFSVMEENNYKPDTENYNSLIFGCCKSRRTDLALEVFETMVNKGYLPNETTYTTLVEGIVHEKQIDLATKVLRELQLKDVISQSTVERLVMQYDLNELPL

Homology

[Close]

BLAST of Carg14773 vs. NCBI nr
Match: XP_022940117.1 (pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Cucurbita moschata])

HSP 1 Score: 230.7 bits (587), Expect = 1.2e-56
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGYGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIFT 60
           MATLLNTVSPITNPSPETTRRGYGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIFT
Sbjct: 1   MATLLNTVSPITNPSPETTRRGYGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIFT 60

Query: 61  LPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCKAS 112
           LPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCKAS
Sbjct: 61  LPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCKAS 111

[Close]

BLAST of Carg14773 vs. NCBI nr
Match: XP_022981090.1 (pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Cucurbita maxima])

HSP 1 Score: 230.7 bits (587), Expect = 1.2e-56
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGYGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIFT 60
           MATLLNTVSPITNPSPETTRRGYGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIFT
Sbjct: 1   MATLLNTVSPITNPSPETTRRGYGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIFT 60

Query: 61  LPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCKAS 112
           LPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCKAS
Sbjct: 61  LPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCKAS 111

[Close]

BLAST of Carg14773 vs. NCBI nr
Match: XP_023525084.1 (pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230.7 bits (587), Expect = 1.2e-56
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGYGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIFT 60
           MATLLNTVSPITNPSPETTRRGYGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIFT
Sbjct: 1   MATLLNTVSPITNPSPETTRRGYGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIFT 60

Query: 61  LPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCKAS 112
           LPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCKAS
Sbjct: 61  LPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCKAS 111

[Close]

BLAST of Carg14773 vs. NCBI nr
Match: XP_022141778.1 (pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Momordica charantia])

HSP 1 Score: 200.3 bits (508), Expect = 1.8e-47
Identity = 96/111 (86.49%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGYGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIFT 60
           MATLLNTVSPI NPSPET+RRG GFFSHIPNLHKLSL+KGFSKVLAST +TISPKDTIFT
Sbjct: 1   MATLLNTVSPIANPSPETSRRGCGFFSHIPNLHKLSLNKGFSKVLASTHITISPKDTIFT 60

Query: 61  LPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCKAS 112
           LPNWR GK DQK+R+ RLNDAFL+LE++V KGQKPDVFQATQLLYDLCKAS
Sbjct: 61  LPNWRTGKVDQKSRDLRLNDAFLHLEFMVRKGQKPDVFQATQLLYDLCKAS 111

[Close]

BLAST of Carg14773 vs. NCBI nr
Match: XP_011653982.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Cucumis sativus] >KGN54942.1 hypothetical protein Csa_4G613170 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 1.5e-46
Identity = 94/109 (86.24%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGYGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIFT 60
           MATLLNTVSPITNPSPETTRRG GFFSHIPN+ KLSL+KGFSKVLASTQ+TISPKDTIFT
Sbjct: 1   MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60

Query: 61  LPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCK 110
           LPNW+IGK DQK++E RLNDAF +LE++V KGQKPDVFQATQLLYDLCK
Sbjct: 61  LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 109

[Close]

BLAST of Carg14773 vs. TAIR10
Match: AT1G79080.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-21
Identity = 58/121 (47.93%), Postives = 83/121 (68.60%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGYGFFSHIPN--LHKLSLSKGFSKVLASTQVTISPKDTI 60
           M+TLLN+V  + +P   + R+  GF SHIP+  LH  S+SKG ++VLASTQ+T+SPKD+ 
Sbjct: 1   MSTLLNSVLSMASPE-SSPRKAVGFVSHIPSGFLHFSSVSKGVARVLASTQITLSPKDSA 60

Query: 61  FTL--PNWR--IGKG----DQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCKA 112
           FT+   +W+  +  G    D ++ E  L+D+F +LE LV  G KP+V  +TQLLYDLCKA
Sbjct: 61  FTITGSSWKPDLDSGSFSDDPRSDEPNLSDSFSHLESLVTGGHKPNVAHSTQLLYDLCKA 120

[Close]

BLAST of Carg14773 vs. Swiss-Prot
Match: sp|A3KPF8|PP131_ARATH (Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g79080 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.8e-20
Identity = 58/121 (47.93%), Postives = 83/121 (68.60%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGYGFFSHIPN--LHKLSLSKGFSKVLASTQVTISPKDTI 60
           M+TLLN+V  + +P   + R+  GF SHIP+  LH  S+SKG ++VLASTQ+T+SPKD+ 
Sbjct: 1   MSTLLNSVLSMASPE-SSPRKAVGFVSHIPSGFLHFSSVSKGVARVLASTQITLSPKDSA 60

Query: 61  FTL--PNWR--IGKG----DQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCKA 112
           FT+   +W+  +  G    D ++ E  L+D+F +LE LV  G KP+V  +TQLLYDLCKA
Sbjct: 61  FTITGSSWKPDLDSGSFSDDPRSDEPNLSDSFSHLESLVTGGHKPNVAHSTQLLYDLCKA 120

[Close]

BLAST of Carg14773 vs. TrEMBL
Match: tr|A0A0A0L2W8|A0A0A0L2W8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G613170 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 9.9e-47
Identity = 94/109 (86.24%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGYGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIFT 60
           MATLLNTVSPITNPSPETTRRG GFFSHIPN+ KLSL+KGFSKVLASTQ+TISPKDTIFT
Sbjct: 1   MATLLNTVSPITNPSPETTRRGCGFFSHIPNIQKLSLNKGFSKVLASTQITISPKDTIFT 60

Query: 61  LPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCK 110
           LPNW+IGK DQK++E RLNDAF +LE++V KGQKPDVFQATQLLYDLCK
Sbjct: 61  LPNWKIGKLDQKSKELRLNDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 109

[Close]

BLAST of Carg14773 vs. TrEMBL
Match: tr|A0A1S3BA04|A0A1S3BA04_CUCME (pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487653 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.1e-44
Identity = 91/109 (83.49%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGYGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIFT 60
           MATLLNTVSPITN SPETTRRG GFFSHIPNL KLSL+KGFSKVLASTQ+TISPKDTIFT
Sbjct: 1   MATLLNTVSPITNTSPETTRRGCGFFSHIPNLQKLSLNKGFSKVLASTQITISPKDTIFT 60

Query: 61  LPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCK 110
           LPNW+ GK +QK++E RL DAF +LE++V KGQKPDVFQATQLLYDLCK
Sbjct: 61  LPNWKTGKVEQKSKELRLTDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 109

[Close]

BLAST of Carg14773 vs. TrEMBL
Match: tr|E5GBB3|E5GBB3_CUCME (Pentatricopeptide repeat-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.1e-44
Identity = 91/109 (83.49%), Postives = 100/109 (91.74%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRGYGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIFT 60
           MATLLNTVSPITN SPETTRRG GFFSHIPNL KLSL+KGFSKVLASTQ+TISPKDTIFT
Sbjct: 1   MATLLNTVSPITNTSPETTRRGCGFFSHIPNLQKLSLNKGFSKVLASTQITISPKDTIFT 60

Query: 61  LPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCK 110
           LPNW+ GK +QK++E RL DAF +LE++V KGQKPDVFQATQLLYDLCK
Sbjct: 61  LPNWKTGKVEQKSKELRLTDAFFHLEFMVEKGQKPDVFQATQLLYDLCK 109

[Close]

BLAST of Carg14773 vs. TrEMBL
Match: tr|A0A2I4F0I9|A0A2I4F0I9_9ROSI (pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Juglans regia OX=51240 GN=LOC108994413 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.3e-43
Identity = 89/112 (79.46%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRG-YGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIF 60
           MAT+LN+VSP+ NPSPE  RRG YGFFSHIPNLH  SL+KGFSKVLASTQ+TISPKDT+F
Sbjct: 1   MATVLNSVSPVGNPSPEGIRRGNYGFFSHIPNLHTFSLNKGFSKVLASTQITISPKDTVF 60

Query: 61  TLPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCKAS 112
           TLPNWR GK D ++RE RLNDAFL+LEY+V KGQKPDV QATQLLYDLCKA+
Sbjct: 61  TLPNWRYGKSDSRSRELRLNDAFLHLEYMVRKGQKPDVAQATQLLYDLCKAN 112

[Close]

BLAST of Carg14773 vs. TrEMBL
Match: tr|A0A2I4G4D8|A0A2I4G4D8_9ROSI (pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109004347 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.3e-43
Identity = 89/112 (79.46%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MATLLNTVSPITNPSPETTRRG-YGFFSHIPNLHKLSLSKGFSKVLASTQVTISPKDTIF 60
           MAT+LN+VSP+ NPSPE  RRG YGFFSHIPNLH  SL+KGFSKVLASTQ+TISPKDT+F
Sbjct: 1   MATVLNSVSPVGNPSPEGIRRGNYGFFSHIPNLHTFSLNKGFSKVLASTQITISPKDTVF 60

Query: 61  TLPNWRIGKGDQKNREHRLNDAFLNLEYLVGKGQKPDVFQATQLLYDLCKAS 112
           TLPNWR GK D ++RE RLNDAFL+LEY+V KGQKPDV QATQLLYDLCKA+
Sbjct: 61  TLPNWRYGKSDSRSRELRLNDAFLHLEYMVRKGQKPDVAQATQLLYDLCKAN 112

The following BLAST results are available for this feature:

BLAST of Carg14773 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940117.1	1.2e-56	100.00	pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Cucurbita ...	[more]
XP_022981090.1	1.2e-56	100.00	pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Cucurbita ...	[more]
XP_023525084.1	1.2e-56	100.00	pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like [Cucur...	[more]
XP_022141778.1	1.8e-47	86.49	pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Momordica ...	[more]
XP_011653982.1	1.5e-46	86.24	PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic ...	[more]

BLAST of Carg14773 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79080.1	2.6e-21	47.93	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Carg14773 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A3KPF8\|PP131_ARATH	4.8e-20	47.93	Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidop...	[more]

BLAST of Carg14773 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L2W8\|A0A0A0L2W8_CUCSA	9.9e-47	86.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G613170 PE=4 SV=1	[more]
tr\|A0A1S3BA04\|A0A1S3BA04_CUCME	2.1e-44	83.49	pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Cucumis ...	[more]
tr\|E5GBB3\|E5GBB3_CUCME	2.1e-44	83.49	Pentatricopeptide repeat-containing protein OS=Cucumis melo subsp. melo OX=41267...	[more]
tr\|A0A2I4F0I9\|A0A2I4F0I9_9ROSI	2.3e-43	79.46	pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Juglans ...	[more]
tr\|A0A2I4G4D8\|A0A2I4G4D8_9ROSI	2.3e-43	79.46	pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like OS=Jug...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14773-RA	Carg14773-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 215..333 e-value: 5.6E-34 score: 119.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 72..214 e-value: 2.0E-29 score: 104.2
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 407..564 e-value: 1.3E-37 score: 132.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 334..406 e-value: 9.9E-12 score: 46.7
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 127..159 e-value: 1.4E-8 score: 34.2
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 479..525 e-value: 4.1E-12 score: 46.0 coord: 414..457 e-value: 1.6E-10 score: 40.9 coord: 235..283 e-value: 2.6E-16 score: 59.4 coord: 166..211 e-value: 3.0E-10 score: 40.0 coord: 305..348 e-value: 4.0E-9 score: 36.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 168..202 e-value: 1.6E-7 score: 29.0 coord: 134..164 e-value: 5.4E-5 score: 21.1 coord: 273..305 e-value: 1.5E-5 score: 22.9 coord: 448..481 e-value: 9.0E-9 score: 33.0 coord: 484..516 e-value: 4.2E-8 score: 30.9 coord: 414..446 e-value: 3.4E-5 score: 21.7 coord: 344..377 e-value: 4.0E-4 score: 18.4 coord: 238..272 e-value: 1.0E-9 score: 36.0 coord: 308..341 e-value: 1.7E-7 score: 29.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 306..340 score: 11.97
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 236..270 score: 13.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 410..444 score: 9.975
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 166..200 score: 12.332
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 515..549 score: 8.298
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 271..305 score: 10.983
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 131..165 score: 10.676
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 445..479 score: 13.176
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 96..130 score: 8.846
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 480..514 score: 12.781
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 201..235 score: 9.514
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 341..375 score: 9.065
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..558
None	No IPR available	PANTHER	PTHR24015:SF765	SUBFAMILY NOT NAMED	coord: 1..558
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 81..273

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14773	Cla023223	Watermelon (97103) v1	carwmB0303
Carg14773	MELO3C010560	Melon (DHL92) v3.5.1	carmeB0318
Carg14773	ClCG11G016340	Watermelon (Charleston Gray)	carwcgB0304
Carg14773	CSPI04G21480	Wild cucumber (PI 183967)	carcpiB0344
Carg14773	Cucsa.058980	Cucumber (Gy14) v1	carcgyB0364
Carg14773	CmaCh01G013010	Cucurbita maxima (Rimu)	carcmaB0437
Carg14773	CmaCh09G007440	Cucurbita maxima (Rimu)	carcmaB0435
Carg14773	CmoCh01G013560	Cucurbita moschata (Rifu)	carcmoB0430
Carg14773	CmoCh09G007360	Cucurbita moschata (Rifu)	carcmoB0429
Carg14773	Lsi04G018710	Bottle gourd (USVL1VR-Ls)	carlsiB285
Carg14773	Cp4.1LG06g05720	Cucurbita pepo (Zucchini)	carcpeB0435
Carg14773	Cp4.1LG02g02350	Cucurbita pepo (Zucchini)	carcpeB0431
Carg14773	CsGy4G020020	Cucumber (Gy14) v2	carcgybB0322
Carg14773	MELO3C010560.2	Melon (DHL92) v3.6.1	carmedB0327
Carg14773	CsaV3_4G031810	Cucumber (Chinese Long) v3	carcucB0343
Carg14773	Cla97C11G222300	Watermelon (97103) v2	carwmbB0320
Carg14773	Bhi09G003026	Wax gourd	carwgoB0396

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg14773	Carg20059	Silver-seed gourd	carcarB340

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14773	Cucurbita maxima (Rimu)	carcmaB0432
Carg14773	Cucurbita moschata (Rifu)	carcmoB0426
Carg14773	Cucurbita pepo (Zucchini)	carcpeB0432
Carg14773	Cucumber (Chinese Long) v2	carcuB0338