CsGy4G004680 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G004680
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	DNA-directed RNA polymerases II and V subunit 8A-like
Location	Chr4 : 3197129 .. 3198965 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATATGCTGCTGGATGTAAATACAGAGATATATCCTATTGATGAAGGTGAGAAGCTTCTGATGGTCTTGTCTCCCACGTTGAACTATGATGGATCTCCTGTTACCAGCTATAAAGATCAGGTAATCCCTCCCAATGTTTTATTTAACTTTGTTGATGGAGGATTCGGGCTGTTCCTTTTCTGTTTGCATTGTTTAAAAGACCAGACAGGTAAAAAAAAAAAACTGTTGGCATCTGCGTCCATATCAATTTTTCCATGAGTAGAAATGGTAGATATATAATAATATTTTATAGGAATTACTAAAGATATCATTAATAACTCCTCAAGGTATCTCTGCGACTGAACATTTGGAGAAGGATCTTATCAAGGAGTCTAAAAAAAACTAGAAAAAAGGGTCTGCAAATTGCAGGGCAAGTATCCATTGGTTTCGTTCTGTCAAGGCCGTGCTTGTGCTAGCCATGTCTCTTGAAAACAAATGTGAGGAAAGGAATGTGACTTATTTAGGCTCCTTATGACTTGTGTCTAAGGCTTGTGATGCATGACATAGATTTGTTGAGTCTTGAATATGCGCTTGGTGTTCCAACTTCCCTTAAGACACTGAGGAGCATCTTATTAATCTCAATAGAGTCCTTCAAGTTTTTGAATTTCTTGAACCAATATTTCGGAGGAGGCCCTTGTTTTAATCTACCTTGTTGCATCTATGGCTCAAAAGAAATTGGAGAATCTTTAGAGATATAGAAAAGTCATGAGAGGTGGTTTAGAGTGAGTTGCATTTCAATGCCTCTCTGTAGGCGTGCAGAGAGCTTGTTCCACTTCTTTTTGAAAAAAACTGTATTGTTCTTTTAATTTTGTTCTCTTTGCTTCTATGTTATGCTGTACTGTCATTTATTTTTATCTGCTCCTTTTGCTCTTTCATTACATTTATTTCTTATGAAGAAAATATGCACTTGTTAATTTATTTAATTTTATTTTAAAGGTTCGTAACTTTGTATAAATTGCCAACACAAGCATAGCGTAGTTGGCATCTGTATGTTCCCAAGGACAAGATGTTCGTGTTCAAATTCCCCACCCCAAGTTGTACTTAAAAAGACTTTTTTTTAAAGAAACTTCGTATAGACTATTTTTATAATCAAAATTTTGCAGATGTTGGATAGCATTAGAAATGTAGATACACTTTTAACATAACGTTAACAAGAGAAACTTTGACAAACCTGGTTTAATTCAGTTTCCATGATCGTAATTGTAAACATTACACATTTGAAATTTTAGTGGTAATATCCTTCAAATGAACTTAATTTTTGGCAGGAAGGGAAGAAATCTCTAGCTGATAAGTTTGAATACATCATGCATGGTAAAACATACAAACTTTCAGATGAAGGCTCAGGTTCAGACTTGAAAGTGTAAGTGACCTAACATTCTCACGATTTTCTGCAACAGTTCAAATCTGTCATTTTCTTGTCAAATCTTCTATGAATAAAACAAGTACCCTAACCAATTGGAGAGGGCAGTTAACCTCTCCTTCCCTACAATTAGACCGTGTACCATGTCCATGACTCCACTAACCGATTGCTTTGGGGATTATACCCCTTTTTACTCTTTCTAGCATAAGTACTAATAATTGAGTCGTATGAGGCGTTTGCAACTCAATTAATAAATTGTTTCACATGTCTCGTAAATCGTTGGCTCTGATGTTGTTTGGTTGGAATGATTGTATATGCAGGGAGGTTTATGCATCTTTTGGAGGACTCCAAATGCTGTTGAAGGGAGATCCCATCCACTGTGCCAAATTCAGGGTGGATCAGAACATGTTTTTGCTCCTTCGAAAACTCACATAA

mRNA sequence

ATGCATATGCTGCTGGATGTAAATACAGAGATATATCCTATTGATGAAGGTGAGAAGCTTCTGATGGTCTTGTCTCCCACGTTGAACTATGATGGATCTCCTGTTACCAGCTATAAAGATCAGGAAGGGAAGAAATCTCTAGCTGATAAGTTTGAATACATCATGCATGGTAAAACATACAAACTTTCAGATGAAGGCTCAGGTTCAGACTTGAAAGTGGAGGTTTATGCATCTTTTGGAGGACTCCAAATGCTGTTGAAGGGAGATCCCATCCACTGTGCCAAATTCAGGGTGGATCAGAACATGTTTTTGCTCCTTCGAAAACTCACATAA

Coding sequence (CDS)

ATGCATATGCTGCTGGATGTAAATACAGAGATATATCCTATTGATGAAGGTGAGAAGCTTCTGATGGTCTTGTCTCCCACGTTGAACTATGATGGATCTCCTGTTACCAGCTATAAAGATCAGGAAGGGAAGAAATCTCTAGCTGATAAGTTTGAATACATCATGCATGGTAAAACATACAAACTTTCAGATGAAGGCTCAGGTTCAGACTTGAAAGTGGAGGTTTATGCATCTTTTGGAGGACTCCAAATGCTGTTGAAGGGAGATCCCATCCACTGTGCCAAATTCAGGGTGGATCAGAACATGTTTTTGCTCCTTCGAAAACTCACATAA

Protein sequence

MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTYKLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT

Homology

[Close]

BLAST of CsGy4G004680 vs. NCBI nr
Match: XP_004149143.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucumis sativus] >XP_011653128.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucumis sativus] >XP_011653129.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucumis sativus] >KGN53231.1 hypothetical protein Csa_4G031020 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 7.6e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY
Sbjct: 37  MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 111
           KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 146

[Close]

BLAST of CsGy4G004680 vs. NCBI nr
Match: XP_008453774.1 (PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Cucumis melo])

HSP 1 Score: 219.5 bits (558), Expect = 5.5e-54
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M MLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY
Sbjct: 37  MSMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 111
           KLSDEGSGSDLKVEVYASFGGLQMLLKGDPI+CAKFRVDQNMFLLLRKLT
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPINCAKFRVDQNMFLLLRKLT 146

[Close]

BLAST of CsGy4G004680 vs. NCBI nr
Match: XP_022929200.1 (DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata] >XP_022929202.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata] >XP_022985172.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_023551974.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.6 bits (540), Expect = 6.7e-52
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M+MLLDVNTEIYPIDEGEK+LMVLSPTLNYDG+PVTSY  QEGKKSLADKFEYIMHGK Y
Sbjct: 37  MYMLLDVNTEIYPIDEGEKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 110
           KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 145

[Close]

BLAST of CsGy4G004680 vs. NCBI nr
Match: XP_022983196.1 (DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983203.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983212.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983221.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983229.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima])

HSP 1 Score: 210.7 bits (535), Expect = 2.5e-51
Identity = 100/110 (90.91%), Postives = 107/110 (97.27%), Query Frame = 0


Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M+MLLDVNTEIYPIDEG+K+LMVLSPTLNYDG+PVTSY  QEGKKSLADKFEYIMHGK Y
Sbjct: 37  MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 111
           KL+DEGSGSDLKVEVYASFGGLQM+LKGDP+HCAKFRVDQNMFLLLRKLT
Sbjct: 97  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT 146

[Close]

BLAST of CsGy4G004680 vs. NCBI nr
Match: XP_022136431.1 (DNA-directed RNA polymerases II and V subunit 8A-like [Momordica charantia])

HSP 1 Score: 208.4 bits (529), Expect = 1.3e-50
Identity = 98/109 (89.91%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           MHMLLDVNTEIYPIDEGEK+LMVLSPTLNYDG+PV S+  QEGKKSLADKFEY+MHGK Y
Sbjct: 37  MHMLLDVNTEIYPIDEGEKILMVLSPTLNYDGAPVASHSSQEGKKSLADKFEYVMHGKLY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 110
           KLS+EGSGSDLKVEVYASFGGLQM+LKGDP+HCAKFRVDQNMFLLLRKL
Sbjct: 97  KLSEEGSGSDLKVEVYASFGGLQMMLKGDPVHCAKFRVDQNMFLLLRKL 145

[Close]

BLAST of CsGy4G004680 vs. TAIR10
Match: AT1G54250.1 (RNA polymerase Rpb8)

HSP 1 Score: 133.3 bits (334), Expect = 9.3e-32
Identity = 65/109 (59.63%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M M LDVNTE+YP+  G+K  + L+PTLN DG+P T Y     KK+LADK+EYIMHGK Y
Sbjct: 39  MFMHLDVNTEVYPLAVGDKFTLALAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLY 98

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 110
           K+S E  G   K E+Y SFGGL MLLKGDP H + F +DQ +FLL+RKL
Sbjct: 99  KIS-ERDGKTPKAELYVSFGGLLMLLKGDPAHISHFELDQRLFLLMRKL 146

[Close]

BLAST of CsGy4G004680 vs. TAIR10
Match: AT3G59600.1 (RNA polymerase Rpb8)

HSP 1 Score: 131.0 bits (328), Expect = 4.6e-31
Identity = 63/109 (57.80%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M M LDVNTE+YP+  G+K  + ++PTLN DG+P T Y     KK+LADK+EYIMHGK Y
Sbjct: 39  MFMHLDVNTEVYPLAVGDKFTLAMAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLY 98

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 110
           K+S E  G   K E+Y SFGGL MLL+GDP H + F +DQ +FLL+RKL
Sbjct: 99  KIS-ERDGKTPKAELYVSFGGLLMLLQGDPAHISHFELDQRLFLLMRKL 146

[Close]

BLAST of CsGy4G004680 vs. Swiss-Prot
Match: sp|O81097|RPB8A_ARATH (DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana OX=3702 GN=NRPB8A PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-30
Identity = 65/109 (59.63%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M M LDVNTE+YP+  G+K  + L+PTLN DG+P T Y     KK+LADK+EYIMHGK Y
Sbjct: 39  MFMHLDVNTEVYPLAVGDKFTLALAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLY 98

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 110
           K+S E  G   K E+Y SFGGL MLLKGDP H + F +DQ +FLL+RKL
Sbjct: 99  KIS-ERDGKTPKAELYVSFGGLLMLLKGDPAHISHFELDQRLFLLMRKL 146

[Close]

BLAST of CsGy4G004680 vs. Swiss-Prot
Match: sp|Q9M1A8|RPB8B_ARATH (DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana OX=3702 GN=NRPB8B PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.4e-30
Identity = 63/109 (57.80%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M M LDVNTE+YP+  G+K  + ++PTLN DG+P T Y     KK+LADK+EYIMHGK Y
Sbjct: 39  MFMHLDVNTEVYPLAVGDKFTLAMAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLY 98

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 110
           K+S E  G   K E+Y SFGGL MLL+GDP H + F +DQ +FLL+RKL
Sbjct: 99  KIS-ERDGKTPKAELYVSFGGLLMLLQGDPAHISHFELDQRLFLLMRKL 146

[Close]

BLAST of CsGy4G004680 vs. Swiss-Prot
Match: sp|Q19826|RPAB3_CAEEL (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhabditis elegans OX=6239 GN=rpb-8 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.1e-19
Identity = 44/109 (40.37%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M +++D+N++IYP+ + +K+ +VL+ TL  DG       D + +     ++EY+M+GK Y
Sbjct: 37  MELIIDINSQIYPLKQNDKVRLVLATTLREDGLADEGEYDPKAEYPRIKQYEYVMYGKVY 96

Query: 61  KLSDEGSGSD-LKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRK 109
           +L D+ +G+D  K+  YASFGGL M LKG+ I+   F VD N++LL++K
Sbjct: 97  RLEDDDTGTDGGKLAAYASFGGLLMRLKGEAINLHGFEVDMNLYLLMKK 145

[Close]

BLAST of CsGy4G004680 vs. Swiss-Prot
Match: sp|A8XT81|RPAB3_CAEBR (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhabditis briggsae OX=6238 GN=rpb-8 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.7e-19
Identity = 44/109 (40.37%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M +++D+N++IYP+ + +K  +VL+ TL  DG       D + +     ++EY+M+GK Y
Sbjct: 37  MELIIDINSQIYPLKQNDKFRLVLATTLREDGLADEGEYDPKAEYPRIKQYEYVMYGKVY 96

Query: 61  KLSDEGSGSD-LKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRK 109
           +L D+ SG+D  ++  YASFGGL M LKG+ I+   F VD N++LL++K
Sbjct: 97  RLEDDDSGTDGGQLAAYASFGGLLMRLKGEAINLHGFEVDMNLYLLMKK 145

[Close]

BLAST of CsGy4G004680 vs. Swiss-Prot
Match: sp|Q54YW8|RPAB3_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium discoideum OX=44689 GN=polr2h PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 9.6e-18
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M + +D+ T IYP+   E+  MVL+ +LN DGS   S      K SLADK++Y+M+GK +
Sbjct: 37  MDLQIDIATHIYPLGH-ERFKMVLASSLNLDGSSDNSGSYDTNKPSLADKYDYVMYGKIF 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRK 109
           K   E S S  KV V+ASFGGL +LL+GDP +     +D  ++LL++K
Sbjct: 97  KYQKENSSS--KVSVFASFGGLLVLLQGDPRYLPGIELDARIYLLIKK 141

[Close]

BLAST of CsGy4G004680 vs. TrEMBL
Match: tr|A0A0A0KZC2|A0A0A0KZC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G031020 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.0e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY
Sbjct: 37  MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 111
           KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 146

[Close]

BLAST of CsGy4G004680 vs. TrEMBL
Match: tr|A0A1S3BY97|A0A1S3BY97_CUCME (DNA-directed RNA polymerases II and V subunit 8A-like OS=Cucumis melo OX=3656 GN=LOC103494404 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.6e-54
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M MLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY
Sbjct: 37  MSMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 111
           KLSDEGSGSDLKVEVYASFGGLQMLLKGDPI+CAKFRVDQNMFLLLRKLT
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPINCAKFRVDQNMFLLLRKLT 146

[Close]

BLAST of CsGy4G004680 vs. TrEMBL
Match: tr|W9RLU0|W9RLU0_9ROSA (DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Morus notabilis OX=981085 GN=L484_020129 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 6.4e-35
Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M M LDVNTEIYP+ EG++ +MVLSPTLN++G PV  Y  Q  +KSLADKFEYIMHG  Y
Sbjct: 37  MLMHLDVNTEIYPMKEGDRFVMVLSPTLNWNGVPVADYHKQAEQKSLADKFEYIMHGLLY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 111
           KL++EGSGSD KV +Y SFGGLQM+L GDP  C KF+ DQ MFLL+RK++
Sbjct: 97  KLTEEGSGSDFKVGIYVSFGGLQMMLNGDPAQCTKFKHDQKMFLLIRKVS 146

[Close]

BLAST of CsGy4G004680 vs. TrEMBL
Match: tr|A0A200QQI5|A0A200QQI5_9MAGN (RNA polymerase OS=Macleaya cordata OX=56857 GN=BVC80_9019g32 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.4e-34
Identity = 71/109 (65.14%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M+M LDVNTEIYP+  G+K  MVL+PTL+ DG+P T Y  Q G+KSLADKFEY+MHGK Y
Sbjct: 37  MYMQLDVNTEIYPLSVGDKFTMVLAPTLSLDGTPDTGYFTQGGRKSLADKFEYVMHGKLY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 110
           K+S+EGSG ++KVE+YASFGGL M+LKGDP + A F +DQ +FLL+RK+
Sbjct: 97  KISEEGSGINVKVEIYASFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 145

[Close]

BLAST of CsGy4G004680 vs. TrEMBL
Match: tr|A0A200PX79|A0A200PX79_9MAGN (RNA polymerase OS=Macleaya cordata OX=56857 GN=BVC80_9095g35 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.4e-34
Identity = 71/109 (65.14%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M+M LDVNTEIYP+  G+K  MVL+PTL+ DG+P T Y  Q G+KSLADKFEY+MHGK Y
Sbjct: 37  MYMQLDVNTEIYPLSVGDKFTMVLAPTLSLDGTPDTGYFMQGGRKSLADKFEYVMHGKLY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 110
           K+S+EGSG ++KVE+YASFGGL M+LKGDP + A F +DQ +FLL+RK+
Sbjct: 97  KISEEGSGINVKVEIYASFGGLLMMLKGDPSNAANFELDQRLFLLMRKV 145

The following BLAST results are available for this feature:

BLAST of CsGy4G004680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149143.1	7.6e-56	100.00	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucumis sa...	[more]
XP_008453774.1	5.5e-54	98.18	PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Cucumis melo]	[more]
XP_022929200.1	6.7e-52	94.50	DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata] >...	[more]
XP_022983196.1	2.5e-51	90.91	DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP...	[more]
XP_022136431.1	1.3e-50	89.91	DNA-directed RNA polymerases II and V subunit 8A-like [Momordica charantia]	[more]

BLAST of CsGy4G004680 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54250.1	9.3e-32	59.63	RNA polymerase Rpb8	[more]
AT3G59600.1	4.6e-31	57.80	RNA polymerase Rpb8	[more]

BLAST of CsGy4G004680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O81097\|RPB8A_ARATH	1.7e-30	59.63	DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana OX=3702...	[more]
sp\|Q9M1A8\|RPB8B_ARATH	8.4e-30	57.80	DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana OX=...	[more]
sp\|Q19826\|RPAB3_CAEEL	5.1e-19	40.37	Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhab...	[more]
sp\|A8XT81\|RPAB3_CAEBR	8.7e-19	40.37	Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhab...	[more]
sp\|Q54YW8\|RPAB3_DICDI	9.6e-18	44.44	DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium disc...	[more]

BLAST of CsGy4G004680 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZC2\|A0A0A0KZC2_CUCSA	5.0e-56	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G031020 PE=3 SV=1	[more]
tr\|A0A1S3BY97\|A0A1S3BY97_CUCME	3.6e-54	98.18	DNA-directed RNA polymerases II and V subunit 8A-like OS=Cucumis melo OX=3656 GN...	[more]
tr\|W9RLU0\|W9RLU0_9ROSA	6.4e-35	66.36	DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Morus notabilis OX...	[more]
tr\|A0A200QQI5\|A0A200QQI5_9MAGN	1.4e-34	65.14	RNA polymerase OS=Macleaya cordata OX=56857 GN=BVC80_9019g32 PE=3 SV=1	[more]
tr\|A0A200PX79\|A0A200PX79_9MAGN	2.4e-34	65.14	RNA polymerase OS=Macleaya cordata OX=56857 GN=BVC80_9095g35 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold
IPR005570	RNA_pol_Rpb8

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription from RNA polymerase III promoter
biological_process	GO:0006366	transcription from RNA polymerase II promoter
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	DNA-directed RNA polymerase I complex
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0005666	DNA-directed RNA polymerase III complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G004680.1	CsGy4G004680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005570	RNA polymerase, Rpb8	SMART	SM00658	rpol8neu	coord: 1..108 e-value: 2.5E-23 score: 93.5
IPR005570	RNA polymerase, Rpb8	PFAM	PF03870	RNA_pol_Rpb8	coord: 1..108 e-value: 1.1E-34 score: 119.5
IPR005570	RNA polymerase, Rpb8	PIRSF	PIRSF000779	RPB8	coord: 1..110 e-value: 7.6E-31 score: 105.0
IPR005570	RNA polymerase, Rpb8	PANTHER	PTHR10917	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3	coord: 1..109
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 1..110 e-value: 8.2E-35 score: 121.7
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 1..108

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G004680	Csa4G031020	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G004680	MELO3C017579	Melon (DHL92) v3.5.1	cgybmeB269
CsGy4G004680	CSPI04G04750	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G004680	CmaCh16G006790	Cucurbita maxima (Rimu)	cgybcmaB498
CsGy4G004680	CmaCh04G007950	Cucurbita maxima (Rimu)	cgybcmaB547
CsGy4G004680	CmoCh16G007370	Cucurbita moschata (Rifu)	cgybcmoB467
CsGy4G004680	CmoCh04G008550	Cucurbita moschata (Rifu)	cgybcmoB521
CsGy4G004680	Cp4.1LG14g01400	Cucurbita pepo (Zucchini)	cgybcpeB487
CsGy4G004680	Cp4.1LG01g09630	Cucurbita pepo (Zucchini)	cgybcpeB509
CsGy4G004680	MELO3C017579.2	Melon (DHL92) v3.6.1	cgybmedB266
CsGy4G004680	CsaV3_4G004830	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G004680	CsaV3_UNG188480	Cucumber (Chinese Long) v3	cgybcucB187
CsGy4G004680	Bhi01G001922	Wax gourd	cgybwgoB361
CsGy4G004680	Carg05790	Silver-seed gourd	carcgybB1005
CsGy4G004680	Carg14195	Silver-seed gourd	carcgybB0931

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G004680	Cucurbita pepo (Zucchini)	cgybcpeB507
CsGy4G004680	Cucurbita pepo (Zucchini)	cgybcpeB531
CsGy4G004680	Bottle gourd (USVL1VR-Ls)	cgyblsiB277
CsGy4G004680	Watermelon (Charleston Gray)	cgybwcgB303
CsGy4G004680	Watermelon (97103) v1	cgybwmB288
CsGy4G004680	Watermelon (97103) v1	cgybwmB303
CsGy4G004680	Watermelon (97103) v2	cgybwmbB254
CsGy4G004680	Watermelon (97103) v2	cgybwmbB305