Carg05790 (gene) Silver-seed gourd

Overview
NameCarg05790
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNA-directed RNA polymerases I, II, and III subunit rpabc3
LocationCucurbita_argyrosperma_scaffold_033 : 1070049 .. 1073024 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTTTAAATTGTGGGCTCTGAATCTTAAAAATACAAATAAATAAAATAACGAGTAAACCCTAAACCTTTGCGTGCTCCACCTCCTCCTCCTTCGCGCCGGCTTCACCTTCCTTTTCAGTAGCTCAGTGCCGCCGACGTCTTTCCTCCGCTCGTTCCGGCGCCGCCTCCGTCATAGCTGTTTGCATTGATTGTTTACTCTCTTGTTGTTATTGGTATTTGCCCAATCTCCATCTACGTTCTATTCTCACTTGAAAAACTTAAAATTAGGAATTGTCTAATGAAAGAATGGTGCCATTGATTTTTAATGCAAGTTCGCACAATTTCTGGATAGTAGTCTTGCGGCAAATTGTGAATTTTTGGACTGCCGTGTGCTCTGTCTTTTGATCTATTGATTTATTGCGTATCTGTTAATGAAGGCTTTGATCATCTGTGTTCTTTGGTTCTCTGAAAATTGCTTAGTTTCTTGTCAACATGAATTTTCCTGTATCTCGAATAAAAAACAAAGTCGCAGATATTAGAATGTGAATAGACTCAGCCACCATACACCTTTATGGCGGGTTGTTTCGATTTTACCCTTTTCGTTCTTACCGTTTTTTGAGTTTCAATAGAATCTGGTCTTGGACAGACTTTGAAGTTCTTGTATTGGTTGTTTTTGGGGGTTTAAATTTTTGTTTAGCTCTTATGATGTTTATGATGTAATTTTGCGTTTCCGCCAAGTGAGTTCTTTGATTCCGAATTCAAAATGTTTCTCCATCCCCTCTCAATTTCTACGCTTATTCTGTGCAAATTTTAGTTGGTGATTTCTTTCACTGGCTTTTCATCCCATATTTAATATTTGTTGCATGCCCACCAACTCAGATCTGCATTTTGAGGAGTGAATTCCCCATAAACATGGCGGAGCTTCTATTTAATGATGTTTTCAAGGTCAAGTGTGTCAACCCAGATGGTAAAAAGTATGATAAAGGTACTTTCCTCAAGCTTGTTATTACTTTCTCATCCTTCAATCATAATTTTCTGGTCTTTGAACTTTCTTTGAGTCTCCTTTGTAGACTTGAAACTTCGTCACCGTCTTAAGTTTGTTGTGATTGCATAAAATTGTTCTTTTAGTTTCGAGAATCGAAGCACGGAGTGAGAAGCTTTCCATGTATATGCTGCTGGATGTAAATACAGAGATATATCCAATTGATGAAGGTGAGAAGATTCTGATGGTCTTGTCTCCCACGCTGAACTATGATGGAGCTCCTGTTACCAGCTATAGTGGCCAGGTAATTTCCACCCCCCATATTCTATTGAATTCATTGCTGGAGCTCTTGGGTCATTCGTTTCATGTTCTTCATGTCTGTTTTGTCACAAGTAGAATGTTAGATGTATCTTCAAAGTTCTTAATAACTCCATAAGCTTTCTCTGATACTAAAAATTTGGAGAAGGATTTTCCCTAGCAGTCTAAAAAAGCCTAGAAAAAAGGGTCCCCGAACTTCCAGGCTAGTATCAATTGGTGCTGTTCTGTTAAGGCTGTGCTAGTGCTAGCCATGTCGCTTGAAAAGTAACACGAAAAGATGAATGAGCTCTTATTTAGGCGAGTTAAGACTCGTGTCCAAGGCTTGTGACACATGCCATAGATTAGTCAAGTATTGAAGATGCCTGCCTAGGTGTTCCAACTTTCCTTAAAGACACTTAAGAGTGTTAGGAACCACGACCCTTCACAATGATATGATTTTGTCCATTTTGAGCCTAAGATCTCATGGCTTTGCTTTTGATTTCTCCAAAAGGCCTCATACTAATGGAGTCACTGTTTTTTACTTATAAACTCATGATCAACCCTTAATTAACCGATGGAACTCCTCTTCCAACAATCCTCAACAATCCTCCCCTTGAACAAATTACACCATAGAGCCTCCCTAGAGGCCTATGAAGCCCTCGAACAACCTCTCCTTAATTGAGGCTCAACTCCTTTTTTTGGAGCCCTCGAACCAAGTACACCCTTTGTTCAACACTTGAGTAACTTTTGACTACACCTTCGAGGCTTACAACTTCTTTGTTCGACATTTGAGAATTTTATTGACATGGTTAAGTTAAGGGCATGGCTCTGATAATCCCATGTCAGGAACCACGACCCCTCAACAATGGTATGATAACATCTACTTTGAGCATAAGCTCTCGTGGCTTTGCTTTTGATTTCTCCAAAAGGTCTAATAATATCAATAGAGATAGTGTTCCTTACTTATAAACCCATGATCAACCCCTTAATTAGACGATGAGACTCCTCTCCCAACCATCTTCAGCCAGGGTCACTTTGACCAACCTGTTTTACTTCAGCCGTCAAGATTGTGAAACATAGATGAATTTTTTTTTTTTTTGCAGGAAGGGAAGAAATCGCTAGCAGATAAGTTTGAGTATATCATGCATGGTAAAATATACAAACTTTCAGATGAAGGCTCGGGTTCAGACTTGAAAGTGTAAGTAAACTTACTTACATTTCCTTGATTTACTGTTCCTAGCATAAGTAGCTACCTAGCAATCGTGTCATATAAAGCGTTCACAACACTGATGGGTTAGCTGCAATGGTTGTTGTATTTACTGTTCCTAGCATAAGTAGCTACCTAGCAATCGTGTCGTATAAAGCGTTCACAACGCTGATGATTTAGCTGCAATGGTTGTTGTATTTGCAGGGAGGTTTATGCATCTTTTGGAGGACTCCAAATGCTGTTGAAGGGAGATCCCATCCACTGTGCCAAATTCAGGGTGGATCAGAACATGTTTTTGCTCCTCCGAAAACTCTAAAAATCTCTCCTACTTGCTGTTTCACTCTCATGATGGCCTTTTGTGTGATGACTCTGTCTAGTTATTGATAATATTTGCAGATAATTTATGCGTTCAAAACTTTTACTAAATTGATCTTCATAGTCAATATGGCTTTACATAACACCAAGTGTTTTCCTAACGTTATGTTCAGTTTCTATTAAAAATTATTTAAT

mRNA sequence

TATTTTAAATTGTGGGCTCTGAATCTTAAAAATACAAATAAATAAAATAACGAGTAAACCCTAAACCTTTGCGTGCTCCACCTCCTCCTCCTTCGCGCCGGCTTCACCTTCCTTTTCAGTAGCTCAGTGCCGCCGACGTCTTTCCTCCGCTCGTTCCGGCGCCGCCTCCGTCATAGCTGTTTGCATTGATTGTTTACTCTCTTGTTGTTATTGGTATTTGCCCAATCTCCATCTACGTTCTATTCTCACTTGAAAAACTTAAAATTAGGAATTGTCTAATGAAAGAATGGTGCCATTGATTTTTAATGCAAGTTCGCACAATTTCTGGATAGTAGTCTTGCGGCAAATTGTGAATTTTTGGACTGCCGTGTGCTCTGTCTTTTGATCTATTGATTTATTGCGTATCTGTTAATGAAGGCTTTGATCATCTGTGTTCTTTGGTTCTCTGAAAATTGCTTAGTTTCTTGTCAACATGAATTTTCCTGTATCTCGAATAAAAAACAAAGTCGCAGATATTAGAATGTGAATAGACTCAGCCACCATACACCTTTATGGCGGGTTGTTTCGATTTTACCCTTTTCGTTCTTACCGTTTTTTGAGTTTCAATAGAATCTGGTCTTGGACAGACTTTGAAGTTCTTGTATTGGTTGTTTTTGGGGGTTTAAATTTTTGTTTAGCTCTTATGATGTTTATGATGTAATTTTGCGTTTCCGCCAAGTGAGTTCTTTGATTCCGAATTCAAAATGTTTCTCCATCCCCTCTCAATTTCTACGCTTATTCTGTGCAAATTTTAGTTGGTGATTTCTTTCACTGGCTTTTCATCCCATATTTAATATTTGTTGCATGCCCACCAACTCAGATCTGCATTTTGAGGAGTGAATTCCCCATAAACATGGCGGAGCTTCTATTTAATGATGTTTTCAAGGTCAAGTGTGTCAACCCAGATGGTAAAAAGTATGATAAAGTTTCGAGAATCGAAGCACGGAGTGAGAAGCTTTCCATGTATATGCTGCTGGATGTAAATACAGAGATATATCCAATTGATGAAGGTGAGAAGATTCTGATGGTCTTGTCTCCCACGCTGAACTATGATGGAGCTCCTGTTACCAGCTATAGTGGCCAGGAAGGGAAGAAATCGCTAGCAGATAAGTTTGAGTATATCATGCATGGTAAAATATACAAACTTTCAGATGAAGGCTCGGGTTCAGACTTGAAAGTGGAGGTTTATGCATCTTTTGGAGGACTCCAAATGCTGTTGAAGGGAGATCCCATCCACTGTGCCAAATTCAGGGTGGATCAGAACATGTTTTTGCTCCTCCGAAAACTCTAAAAATCTCTCCTACTTGCTGTTTCACTCTCATGATGGCCTTTTGTGTGATGACTCTGTCTAGTTATTGATAATATTTGCAGATAATTTATGCGTTCAAAACTTTTACTAAATTGATCTTCATAGTCAATATGGCTTTACATAACACCAAGTGTTTTCCTAACGTTATGTTCAGTTTCTATTAAAAATTATTTAAT

Coding sequence (CDS)

ATGGCGGAGCTTCTATTTAATGATGTTTTCAAGGTCAAGTGTGTCAACCCAGATGGTAAAAAGTATGATAAAGTTTCGAGAATCGAAGCACGGAGTGAGAAGCTTTCCATGTATATGCTGCTGGATGTAAATACAGAGATATATCCAATTGATGAAGGTGAGAAGATTCTGATGGTCTTGTCTCCCACGCTGAACTATGATGGAGCTCCTGTTACCAGCTATAGTGGCCAGGAAGGGAAGAAATCGCTAGCAGATAAGTTTGAGTATATCATGCATGGTAAAATATACAAACTTTCAGATGAAGGCTCGGGTTCAGACTTGAAAGTGGAGGTTTATGCATCTTTTGGAGGACTCCAAATGCTGTTGAAGGGAGATCCCATCCACTGTGCCAAATTCAGGGTGGATCAGAACATGTTTTTGCTCCTCCGAAAACTCTAA

Protein sequence

MAELLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL
Homology
[Close]
BLAST of Carg05790 vs. NCBI nr
Match: XP_022929200.1 (DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata] >XP_022929202.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata] >XP_022985172.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_023551974.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.0 bits (754), Expect = 1.3e-76
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 1   MAELLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVL 60
           MAELLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVL
Sbjct: 1   MAELLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVL 60

Query: 61  SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSDLKVEVYASFGGLQM 120
           SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSDLKVEVYASFGGLQM
Sbjct: 61  SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSDLKVEVYASFGGLQM 120

Query: 121 LLKGDPIHCAKFRVDQNMFLLLRKL 146
           LLKGDPIHCAKFRVDQNMFLLLRKL
Sbjct: 121 LLKGDPIHCAKFRVDQNMFLLLRKL 145

[Close]
BLAST of Carg05790 vs. NCBI nr
Match: XP_022983196.1 (DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983203.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983212.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983221.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983229.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima])

HSP 1 Score: 287.0 bits (733), Expect = 3.7e-74
Identity = 137/145 (94.48%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 1   MAELLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVL 60
           MAE+LF+D+FKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEG+KILMVL
Sbjct: 1   MAEVLFDDIFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGDKILMVL 60

Query: 61  SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSDLKVEVYASFGGLQM 120
           SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGK+YKL+DEGSGSDLKVEVYASFGGLQM
Sbjct: 61  SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLYKLADEGSGSDLKVEVYASFGGLQM 120

Query: 121 LLKGDPIHCAKFRVDQNMFLLLRKL 146
           +LKGDP+HCAKFRVDQNMFLLLRKL
Sbjct: 121 MLKGDPLHCAKFRVDQNMFLLLRKL 145

[Close]
BLAST of Carg05790 vs. NCBI nr
Match: XP_022942165.1 (DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata])

HSP 1 Score: 283.5 bits (724), Expect = 4.1e-73
Identity = 136/145 (93.79%), Postives = 143/145 (98.62%), Query Frame = 0 

Query: 1   MAELLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVL 60
           MAELLF+D+FKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEG+KILMVL
Sbjct: 1   MAELLFDDIFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGDKILMVL 60

Query: 61  SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSDLKVEVYASFGGLQM 120
           SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMH K+YKL+DEGSGSDLKVEVYASFGGLQM
Sbjct: 61  SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHRKLYKLADEGSGSDLKVEVYASFGGLQM 120

Query: 121 LLKGDPIHCAKFRVDQNMFLLLRKL 146
           +LKGDP+HC KFRVDQNMFLLLRKL
Sbjct: 121 MLKGDPLHCVKFRVDQNMFLLLRKL 145

[Close]
BLAST of Carg05790 vs. NCBI nr
Match: XP_004149143.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucumis sativus] >XP_011653128.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucumis sativus] >XP_011653129.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucumis sativus] >KGN53231.1 hypothetical protein Csa_4G031020 [Cucumis sativus])

HSP 1 Score: 282.0 bits (720), Expect = 1.2e-72
Identity = 137/145 (94.48%), Postives = 141/145 (97.24%), Query Frame = 0 

Query: 1   MAELLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVL 60
           MA LLFND+FKVKCVNPDGKKYDKVSRIEARSEKLSM+MLLDVNTEIYPIDEGEK+LMVL
Sbjct: 1   MAGLLFNDIFKVKCVNPDGKKYDKVSRIEARSEKLSMHMLLDVNTEIYPIDEGEKLLMVL 60

Query: 61  SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSDLKVEVYASFGGLQM 120
           SPTLNYDG+PVTSY  QEGKKSLADKFEYIMHGK YKLSDEGSGSDLKVEVYASFGGLQM
Sbjct: 61  SPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTYKLSDEGSGSDLKVEVYASFGGLQM 120

Query: 121 LLKGDPIHCAKFRVDQNMFLLLRKL 146
           LLKGDPIHCAKFRVDQNMFLLLRKL
Sbjct: 121 LLKGDPIHCAKFRVDQNMFLLLRKL 145

[Close]
BLAST of Carg05790 vs. NCBI nr
Match: XP_008453774.1 (PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Cucumis melo])

HSP 1 Score: 276.9 bits (707), Expect = 3.8e-71
Identity = 136/145 (93.79%), Postives = 140/145 (96.55%), Query Frame = 0 

Query: 1   MAELLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVL 60
           MA LLFNDVFKVKCVNPDGKKYDKVSRI+ARSEKLSM MLLDVNTEIYPIDEGEK+LMVL
Sbjct: 1   MAGLLFNDVFKVKCVNPDGKKYDKVSRIDARSEKLSMSMLLDVNTEIYPIDEGEKLLMVL 60

Query: 61  SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSDLKVEVYASFGGLQM 120
           SPTLNYDG+PVTSY  QEGKKSLADKFEYIMHGK YKLSDEGSGSDLKVEVYASFGGLQM
Sbjct: 61  SPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTYKLSDEGSGSDLKVEVYASFGGLQM 120

Query: 121 LLKGDPIHCAKFRVDQNMFLLLRKL 146
           LLKGDPI+CAKFRVDQNMFLLLRKL
Sbjct: 121 LLKGDPINCAKFRVDQNMFLLLRKL 145

[Close]
BLAST of Carg05790 vs. TAIR10
Match: AT3G59600.1 (RNA polymerase Rpb8)

HSP 1 Score: 174.5 bits (441), Expect = 4.8e-44
Identity = 81/142 (57.04%), Postives = 106/142 (74.65%), Query Frame = 0 

Query: 4   LLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVLSPT 63
           ++F D+F V  ++PDGKK+DKV+R+EARS  L M+M LDVNTE+YP+  G+K  + ++PT
Sbjct: 6   IMFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAMAPT 65

Query: 64  LNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSDLKVEVYASFGGLQMLLK 123
           LN DG P T Y     KK+LADK+EYIMHGK+YK+S E  G   K E+Y SFGGL MLL+
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKIS-ERDGKTPKAELYVSFGGLLMLLQ 125

Query: 124 GDPIHCAKFRVDQNMFLLLRKL 146
           GDP H + F +DQ +FLL+RKL
Sbjct: 126 GDPAHISHFELDQRLFLLMRKL 146

[Close]
BLAST of Carg05790 vs. TAIR10
Match: AT1G54250.1 (RNA polymerase Rpb8)

HSP 1 Score: 174.1 bits (440), Expect = 6.3e-44
Identity = 82/142 (57.75%), Postives = 105/142 (73.94%), Query Frame = 0 

Query: 4   LLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVLSPT 63
           +LF D+F V  ++PDGKK+DKV+R++A S  L M+M LDVNTE+YP+  G+K  + L+PT
Sbjct: 6   ILFEDIFVVDQLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALAPT 65

Query: 64  LNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSDLKVEVYASFGGLQMLLK 123
           LN DG P T Y     KK+LADK+EYIMHGK+YK+S E  G   K E+Y SFGGL MLLK
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKIS-ERDGKTPKAELYVSFGGLLMLLK 125

Query: 124 GDPIHCAKFRVDQNMFLLLRKL 146
           GDP H + F +DQ +FLL+RKL
Sbjct: 126 GDPAHISHFELDQRLFLLMRKL 146

[Close]
BLAST of Carg05790 vs. Swiss-Prot
Match: sp|Q9M1A8|RPB8B_ARATH (DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana OX=3702 GN=NRPB8B PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 8.7e-43
Identity = 81/142 (57.04%), Postives = 106/142 (74.65%), Query Frame = 0 

Query: 4   LLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVLSPT 63
           ++F D+F V  ++PDGKK+DKV+R+EARS  L M+M LDVNTE+YP+  G+K  + ++PT
Sbjct: 6   IMFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAMAPT 65

Query: 64  LNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSDLKVEVYASFGGLQMLLK 123
           LN DG P T Y     KK+LADK+EYIMHGK+YK+S E  G   K E+Y SFGGL MLL+
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKIS-ERDGKTPKAELYVSFGGLLMLLQ 125

Query: 124 GDPIHCAKFRVDQNMFLLLRKL 146
           GDP H + F +DQ +FLL+RKL
Sbjct: 126 GDPAHISHFELDQRLFLLMRKL 146

[Close]
BLAST of Carg05790 vs. Swiss-Prot
Match: sp|O81097|RPB8A_ARATH (DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana OX=3702 GN=NRPB8A PE=1 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-42
Identity = 82/142 (57.75%), Postives = 105/142 (73.94%), Query Frame = 0 

Query: 4   LLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVLSPT 63
           +LF D+F V  ++PDGKK+DKV+R++A S  L M+M LDVNTE+YP+  G+K  + L+PT
Sbjct: 6   ILFEDIFVVDQLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALAPT 65

Query: 64  LNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSDLKVEVYASFGGLQMLLK 123
           LN DG P T Y     KK+LADK+EYIMHGK+YK+S E  G   K E+Y SFGGL MLLK
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKIS-ERDGKTPKAELYVSFGGLLMLLK 125

Query: 124 GDPIHCAKFRVDQNMFLLLRKL 146
           GDP H + F +DQ +FLL+RKL
Sbjct: 126 GDPAHISHFELDQRLFLLMRKL 146

[Close]
BLAST of Carg05790 vs. Swiss-Prot
Match: sp|Q19826|RPAB3_CAEEL (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhabditis elegans OX=6239 GN=rpb-8 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.8e-31
Identity = 62/145 (42.76%), Postives = 100/145 (68.97%), Query Frame = 0 

Query: 1   MAELLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVL 60
           MA ++F+D+FKVK V+PDGKK+D+VSR    +E   M +++D+N++IYP+ + +K+ +VL
Sbjct: 1   MAGIIFDDMFKVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKVRLVL 60

Query: 61  SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSD-LKVEVYASFGGLQ 120
           + TL  DG         + +     ++EY+M+GK+Y+L D+ +G+D  K+  YASFGGL 
Sbjct: 61  ATTLREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDTGTDGGKLAAYASFGGLL 120

Query: 121 MLLKGDPIHCAKFRVDQNMFLLLRK 145
           M LKG+ I+   F VD N++LL++K
Sbjct: 121 MRLKGEAINLHGFEVDMNLYLLMKK 145

[Close]
BLAST of Carg05790 vs. Swiss-Prot
Match: sp|A8XT81|RPAB3_CAEBR (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhabditis briggsae OX=6238 GN=rpb-8 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.5e-30
Identity = 61/145 (42.07%), Postives = 98/145 (67.59%), Query Frame = 0 

Query: 1   MAELLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVL 60
           MA ++F+D+F VK V+PDGKK+D+VSR    +E   M +++D+N++IYP+ + +K  +VL
Sbjct: 1   MAGIIFDDMFSVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKFRLVL 60

Query: 61  SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSD-LKVEVYASFGGLQ 120
           + TL  DG         + +     ++EY+M+GK+Y+L D+ SG+D  ++  YASFGGL 
Sbjct: 61  ATTLREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDSGTDGGQLAAYASFGGLL 120

Query: 121 MLLKGDPIHCAKFRVDQNMFLLLRK 145
           M LKG+ I+   F VD N++LL++K
Sbjct: 121 MRLKGEAINLHGFEVDMNLYLLMKK 145

[Close]
BLAST of Carg05790 vs. Swiss-Prot
Match: sp|Q54YW8|RPAB3_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium discoideum OX=44689 GN=polr2h PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.5e-30
Identity = 67/144 (46.53%), Postives = 95/144 (65.97%), Query Frame = 0 

Query: 1   MAELLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVL 60
           M  +LF D F+VK ++PDGKK+D+VSR    SE   M + +D+ T IYP+   E+  MVL
Sbjct: 1   MTSILFEDTFEVKEIDPDGKKFDRVSRFVCYSENYEMDLQIDIATHIYPLGH-ERFKMVL 60

Query: 61  SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSDLKVEVYASFGGLQM 120
           + +LN DG+   S S    K SLADK++Y+M+GKI+K   E S S  KV V+ASFGGL +
Sbjct: 61  ASSLNLDGSSDNSGSYDTNKPSLADKYDYVMYGKIFKYQKENSSS--KVSVFASFGGLLV 120

Query: 121 LLKGDPIHCAKFRVDQNMFLLLRK 145
           LL+GDP +     +D  ++LL++K
Sbjct: 121 LLQGDPRYLPGIELDARIYLLIKK 141

[Close]
BLAST of Carg05790 vs. TrEMBL
Match: tr|A0A0A0KZC2|A0A0A0KZC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G031020 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 7.8e-73
Identity = 137/145 (94.48%), Postives = 141/145 (97.24%), Query Frame = 0 

Query: 1   MAELLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVL 60
           MA LLFND+FKVKCVNPDGKKYDKVSRIEARSEKLSM+MLLDVNTEIYPIDEGEK+LMVL
Sbjct: 1   MAGLLFNDIFKVKCVNPDGKKYDKVSRIEARSEKLSMHMLLDVNTEIYPIDEGEKLLMVL 60

Query: 61  SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSDLKVEVYASFGGLQM 120
           SPTLNYDG+PVTSY  QEGKKSLADKFEYIMHGK YKLSDEGSGSDLKVEVYASFGGLQM
Sbjct: 61  SPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTYKLSDEGSGSDLKVEVYASFGGLQM 120

Query: 121 LLKGDPIHCAKFRVDQNMFLLLRKL 146
           LLKGDPIHCAKFRVDQNMFLLLRKL
Sbjct: 121 LLKGDPIHCAKFRVDQNMFLLLRKL 145

[Close]
BLAST of Carg05790 vs. TrEMBL
Match: tr|A0A1S3BY97|A0A1S3BY97_CUCME (DNA-directed RNA polymerases II and V subunit 8A-like OS=Cucumis melo OX=3656 GN=LOC103494404 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.5e-71
Identity = 136/145 (93.79%), Postives = 140/145 (96.55%), Query Frame = 0 

Query: 1   MAELLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVL 60
           MA LLFNDVFKVKCVNPDGKKYDKVSRI+ARSEKLSM MLLDVNTEIYPIDEGEK+LMVL
Sbjct: 1   MAGLLFNDVFKVKCVNPDGKKYDKVSRIDARSEKLSMSMLLDVNTEIYPIDEGEKLLMVL 60

Query: 61  SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSDLKVEVYASFGGLQM 120
           SPTLNYDG+PVTSY  QEGKKSLADKFEYIMHGK YKLSDEGSGSDLKVEVYASFGGLQM
Sbjct: 61  SPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTYKLSDEGSGSDLKVEVYASFGGLQM 120

Query: 121 LLKGDPIHCAKFRVDQNMFLLLRKL 146
           LLKGDPI+CAKFRVDQNMFLLLRKL
Sbjct: 121 LLKGDPINCAKFRVDQNMFLLLRKL 145

[Close]
BLAST of Carg05790 vs. TrEMBL
Match: tr|A0A200PX79|A0A200PX79_9MAGN (RNA polymerase OS=Macleaya cordata OX=56857 GN=BVC80_9095g35 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.6e-49
Identity = 95/145 (65.52%), Postives = 119/145 (82.07%), Query Frame = 0 

Query: 1   MAELLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVL 60
           M ELLF D+F +  ++PDGKK+DKVSRIEARSE+  MYM LDVNTEIYP+  G+K  MVL
Sbjct: 1   MVELLFEDIFTLIRLDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLSVGDKFTMVL 60

Query: 61  SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSDLKVEVYASFGGLQM 120
           +PTL+ DG P T Y  Q G+KSLADKFEY+MHGK+YK+S+EGSG ++KVE+YASFGGL M
Sbjct: 61  APTLSLDGTPDTGYFMQGGRKSLADKFEYVMHGKLYKISEEGSGINVKVEIYASFGGLLM 120

Query: 121 LLKGDPIHCAKFRVDQNMFLLLRKL 146
           +LKGDP + A F +DQ +FLL+RK+
Sbjct: 121 MLKGDPSNAANFELDQRLFLLMRKV 145

[Close]
BLAST of Carg05790 vs. TrEMBL
Match: tr|A0A200QQI5|A0A200QQI5_9MAGN (RNA polymerase OS=Macleaya cordata OX=56857 GN=BVC80_9019g32 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.7e-49
Identity = 94/145 (64.83%), Postives = 119/145 (82.07%), Query Frame = 0 

Query: 1   MAELLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVL 60
           M ELLF D+F +  ++PDGKK+DKVSRIEA+SE+  MYM LDVNTEIYP+  G+K  MVL
Sbjct: 1   MVELLFEDIFTLIRLDPDGKKFDKVSRIEAKSEQFDMYMQLDVNTEIYPLSVGDKFTMVL 60

Query: 61  SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSDLKVEVYASFGGLQM 120
           +PTL+ DG P T Y  Q G+KSLADKFEY+MHGK+YK+S+EGSG ++KVE+YASFGGL M
Sbjct: 61  APTLSLDGTPDTGYFTQGGRKSLADKFEYVMHGKLYKISEEGSGINVKVEIYASFGGLLM 120

Query: 121 LLKGDPIHCAKFRVDQNMFLLLRKL 146
           +LKGDP + A F +DQ +FLL+RK+
Sbjct: 121 MLKGDPSNAANFELDQRLFLLMRKV 145

[Close]
BLAST of Carg05790 vs. TrEMBL
Match: tr|A0A1U8AYQ9|A0A1U8AYQ9_NELNU (DNA-directed RNA polymerases II and V subunit 8A-like OS=Nelumbo nucifera OX=4432 GN=LOC104605253 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 5.1e-48
Identity = 92/145 (63.45%), Postives = 118/145 (81.38%), Query Frame = 0 

Query: 1   MAELLFNDVFKVKCVNPDGKKYDKVSRIEARSEKLSMYMLLDVNTEIYPIDEGEKILMVL 60
           M +LLF D+F VK ++PDGKK+DKVSRI A SE+  MYM LDVNTEIYP+   +K  MVL
Sbjct: 1   MVDLLFEDIFTVKQIDPDGKKFDKVSRIVATSEQFDMYMQLDVNTEIYPLRVDDKFTMVL 60

Query: 61  SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIYKLSDEGSGSDLKVEVYASFGGLQM 120
           +PTL+ DG P + Y  Q G+KSLADKFEY+MHGK+YK+S+EGSG+++KVE+YAS+GGL M
Sbjct: 61  APTLSLDGTPDSGYYTQVGRKSLADKFEYVMHGKLYKISEEGSGANVKVEIYASYGGLLM 120

Query: 121 LLKGDPIHCAKFRVDQNMFLLLRKL 146
           LLKGDP + A F +DQ +FLL+RK+
Sbjct: 121 LLKGDPSNAANFELDQRLFLLMRKV 145

The following BLAST results are available for this feature:
BLAST of Carg05790 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022929200.11.3e-76100.00DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata] >... [more]
XP_022983196.13.7e-7494.48DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP... [more]
XP_022942165.14.1e-7393.79DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata][more]
XP_004149143.11.2e-7294.48PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucumis sa... [more]
XP_008453774.13.8e-7193.79PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Cucumis melo][more]
BLAST of Carg05790 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G59600.14.8e-4457.04RNA polymerase Rpb8[more]
AT1G54250.16.3e-4457.75RNA polymerase Rpb8[more]
BLAST of Carg05790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9M1A8|RPB8B_ARATH8.7e-4357.04DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana OX=... [more]
sp|O81097|RPB8A_ARATH1.1e-4257.75DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana OX=3702... [more]
sp|Q19826|RPAB3_CAEEL5.8e-3142.76Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhab... [more]
sp|A8XT81|RPAB3_CAEBR6.5e-3042.07Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhab... [more]
sp|Q54YW8|RPAB3_DICDI6.5e-3046.53DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium disc... [more]
BLAST of Carg05790 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZC2|A0A0A0KZC2_CUCSA7.8e-7394.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G031020 PE=3 SV=1[more]
tr|A0A1S3BY97|A0A1S3BY97_CUCME2.5e-7193.79DNA-directed RNA polymerases II and V subunit 8A-like OS=Cucumis melo OX=3656 GN... [more]
tr|A0A200PX79|A0A200PX79_9MAGN1.6e-4965.52RNA polymerase OS=Macleaya cordata OX=56857 GN=BVC80_9095g35 PE=3 SV=1[more]
tr|A0A200QQI5|A0A200QQI5_9MAGN2.7e-4964.83RNA polymerase OS=Macleaya cordata OX=56857 GN=BVC80_9019g32 PE=3 SV=1[more]
tr|A0A1U8AYQ9|A0A1U8AYQ9_NELNU5.1e-4863.45DNA-directed RNA polymerases II and V subunit 8A-like OS=Nelumbo nucifera OX=443... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR005570RNA_pol_Rpb8
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05790-RACarg05790-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 2..144
e-value: 2.1E-58
score: 210.1
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 7..144
e-value: 1.2E-48
score: 164.8
IPR005570RNA polymerase, Rpb8PIRSFPIRSF000779RPB8coord: 1..145
e-value: 9.6E-48
score: 159.9
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..144
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 6..145
e-value: 5.7E-49
score: 167.6
NoneNo IPR availablePANTHERPTHR10917:SF1SUBFAMILY NOT NAMEDcoord: 1..144
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 3..144

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg05790Csa4G031020Cucumber (Chinese Long) v2carcuB1033
Carg05790MELO3C017579Melon (DHL92) v3.5.1carmeB0992
Carg05790CSPI04G04750Wild cucumber (PI 183967)carcpiB1057
Carg05790Cucsa.029450Cucumber (Gy14) v1carcgyB1130
Carg05790CmaCh16G006790Cucurbita maxima (Rimu)carcmaB1409
Carg05790CmaCh04G007950Cucurbita maxima (Rimu)carcmaB1414
Carg05790CmoCh04G008550Cucurbita moschata (Rifu)carcmoB1371
Carg05790CmoCh16G007370Cucurbita moschata (Rifu)carcmoB1366
Carg05790Cp4.1LG14g01400Cucurbita pepo (Zucchini)carcpeB1414
Carg05790Cp4.1LG01g09630Cucurbita pepo (Zucchini)carcpeB1417
Carg05790CsGy4G004680Cucumber (Gy14) v2carcgybB1005
Carg05790MELO3C017579.2Melon (DHL92) v3.6.1carmedB1004
Carg05790CsaV3_UNG188480Cucumber (Chinese Long) v3carcucB1067
Carg05790CsaV3_4G004830Cucumber (Chinese Long) v3carcucB1063
Carg05790Bhi01G001922Wax gourdcarwgoB1193
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg05790Carg14195Silver-seed gourdcarcarB646
The following block(s) are covering this gene:
GeneOrganismBlock
Carg05790Cucurbita maxima (Rimu)carcmaB1415
Carg05790Cucurbita pepo (Zucchini)carcpeB1413
Carg05790Cucurbita pepo (Zucchini)carcpeB1419
Carg05790Bottle gourd (USVL1VR-Ls)carlsiB935
Carg05790Watermelon (Charleston Gray)carwcgB0999
Carg05790Watermelon (97103) v1carwmB1018
Carg05790Watermelon (97103) v1carwmB1022
Carg05790Watermelon (97103) v2carwmbB1073
Carg05790Watermelon (97103) v2carwmbB1084