Cp4.1LG01g09630 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g09630
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDNA-directed RNA polymerases I, II, and III subunit rpabc3
LocationCp4.1LG01 : 4226246 .. 4228075 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCATTTGTAGGAGTAAATTCTCCATAAACATGGCGGAGCTTCTATTTGATGATATTTTCAAGGTCTAGTGCGTCAACCCAGATGGTAAAAAGTATGATAAAGGTACTTTCATGAAGCTTGTAACTGCTCTCCATTCTTTTGTAGACAGTAACTTCTGCACCATCTTGACTTTGCTGTGAATGATTTGATGTGATGTTTATTGGGTGCATAAAATTGTTCTTATAGTTTCTAGAATTGAAGCACGGAGTGAGAAGCTTTCCATGTATATGCTGCTGGATGTAAATACAGAGATATATCCAATTGATGAAGGTGACAAGATTCTGATGGTCCTGTCTCCTACGCTGAATTATGATGGAGCTCCTGTTACCAGCTATAGTGGTCAAGTAATGTTTCTCCCCTCAATGTTTAATTGAATTTCATACAATCTTGGTGCTATCTGGTAGTCGTTTCATGTCTCTTCATTGTTTAAAAGAACACTCAGAAACACCTTGCTGCCAGATATCTGCATCCATATGTATCTTATAGATTCTAAAAGAAACTACCAACGATTTCATAATCTTTCTCTGATGCTGAAATTTTGGAGAAGGATTTTACCTAGCGATCTGTAATAGCTCATGTAATAGCTCAAGTTCACCACTAGAACACATTGTCCTCTTCGATTTTTCCTTTCGGGCTTCCAAACATATCTCCTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTTGTTCCCCTCTCCAACTGATGTGGAGTCTCACAATCCATCCCCCTTCGAGGCCCGACGTCCATGCTAGCACTCGATCAACTCTCCAATCGATGGTAGGATCTCACAATCCACCTCTCTTTGAGGTCCAACGTCCTCGCTGCCACACTGTTTGATGTCCACCCCCTTCGGGGCTTAGTGTCCTCACTCAATGGCACACCGCCCAGTGTCCATCCCCCTAGGGGCTCAGTGTCCTCGCTGGCACACCGCCCTGTATCTGGCTTTGATACTATTTGTAATGGCCCAGACCCATCAATAGCAATAGCAGGTATTGTCCTCTTTGGACTTTCCCTTTTGGACTTCTCCTCAAATTTTTAAAACGTATCTGCTAATAAGAGGTTTTCACGCTCTTATAAGAAATGCTCCGTTCCCCTCTCCAACCAACGTGGGATCTCACCGTTTCTATAAACTTTTCATAAAGTAAAAAACAGAACAGTGACTACAAGCAAACAGTTTTATGTTCTAAAAACAAAATTATGCAAATGTTTCTTAGTATGGGAAGTGCCGAGTAGGCACTCATATCAAGCTCAAGCCCGTAAAGATGGTGAACATAATTGAAATCTGCGGAGTAATATTTTTGAACTAAACTTAAGTTGTTGCAGGAAGGGAAGAAATCACTAGCAGATAAGTTCGAGTATATCATGCATGGGAAGCTGTACAAACTCGCAGATGAAGGCTCAGGATCAGACTTGAAAGTGTAAGTGAATTGCCATGATTTTGCCCACCCATTTCTGCTACTGATTTTCCTAAAAGTCTAAGTGGAAGTACTTTATGCATGATTCTAACTCGATTCAAAAAAACATATTTTGATGTCGGAATTGGGTGTATTTTACAGAGAGGTTTATGCATCTTTTGGAGGACTTCAAATGATGTTGAAGGGAGATCCCCTCCACTGTGCCAAATTCAGGGTAGATCAGAACATGTTCTTGCTCCTCCGAAAGCTCACATGAACCTCAACAATCTCTCCTAATTATGAATTATAATTCTAGATAACTTATGAATTGATTGAAGGCCTTCTTTAATTTGTAAGCTTGTGTGAAGCAGTATAATTAATACGAAATGTTGT

mRNA sequence

TGCATTTGTAGGAGTAAATTCTCCATAAACATGGCGGAGCTTCTATTTGATGATATTTTCAAGGTCTAGTGCGTCAACCCAGATGGTAAAAAGTATGATAAAGTTTCTAGAATTGAAGCACGGAGTGAGAAGCTTTCCATGTATATGCTGCTGGATGTAAATACAGAGATATATCCAATTGATGAAGGTGACAAGATTCTGATGGTCCTGTCTCCTACGCTGAATTATGATGGAGCTCCTGTTACCAGCTATAGTGGTCAAGAAGGGAAGAAATCACTAGCAGATAAGTTCGAGTATATCATGCATGGGAAGCTGTACAAACTCGCAGATGAAGGCTCAGGATCAGACTTGAAAGTAGAGGTTTATGCATCTTTTGGAGGACTTCAAATGATGTTGAAGGGAGATCCCCTCCACTGTGCCAAATTCAGGGTAGATCAGAACATGTTCTTGCTCCTCCGAAAGCTCACATGAACCTCAACAATCTCTCCTAATTATGAATTATAATTCTAGATAACTTATGAATTGATTGAAGGCCTTCTTTAATTTGTAAGCTTGTGTGAAGCAGTATAATTAATACGAAATGTTGT

Coding sequence (CDS)

ATGTATATGCTGCTGGATGTAAATACAGAGATATATCCAATTGATGAAGGTGACAAGATTCTGATGGTCCTGTCTCCTACGCTGAATTATGATGGAGCTCCTGTTACCAGCTATAGTGGTCAAGAAGGGAAGAAATCACTAGCAGATAAGTTCGAGTATATCATGCATGGGAAGCTGTACAAACTCGCAGATGAAGGCTCAGGATCAGACTTGAAAGTAGAGGTTTATGCATCTTTTGGAGGACTTCAAATGATGTTGAAGGGAGATCCCCTCCACTGTGCCAAATTCAGGGTAGATCAGAACATGTTCTTGCTCCTCCGAAAGCTCACATGA

Protein sequence

MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLYKLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT
Homology
[Close]
BLAST of Cp4.1LG01g09630 vs. Swiss-Prot
Match: RPB8A_ARATH (DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana GN=NRPB8A PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-31
Identity = 65/109 (59.63%), Postives = 80/109 (73.39%), Query Frame = 1 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M+M LDVNTE+YP+  GDK  + L+PTLN DG P T Y     KK+LADK+EYIMHGKLY
Sbjct: 39  MFMHLDVNTEVYPLAVGDKFTLALAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLY 98

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKL 110
           K++ E  G   K E+Y SFGGL M+LKGDP H + F +DQ +FLL+RKL
Sbjct: 99  KIS-ERDGKTPKAELYVSFGGLLMLLKGDPAHISHFELDQRLFLLMRKL 146

[Close]
BLAST of Cp4.1LG01g09630 vs. Swiss-Prot
Match: RPB8B_ARATH (DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana GN=NRPB8B PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-30
Identity = 63/109 (57.80%), Postives = 80/109 (73.39%), Query Frame = 1 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M+M LDVNTE+YP+  GDK  + ++PTLN DG P T Y     KK+LADK+EYIMHGKLY
Sbjct: 39  MFMHLDVNTEVYPLAVGDKFTLAMAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLY 98

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKL 110
           K++ E  G   K E+Y SFGGL M+L+GDP H + F +DQ +FLL+RKL
Sbjct: 99  KIS-ERDGKTPKAELYVSFGGLLMLLQGDPAHISHFELDQRLFLLMRKL 146

[Close]
BLAST of Cp4.1LG01g09630 vs. Swiss-Prot
Match: RPAB3_CAEEL (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhabditis elegans GN=rpb-8 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-18
Identity = 43/109 (39.45%), Postives = 73/109 (66.97%), Query Frame = 1 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M +++D+N++IYP+ + DK+ +VL+ TL  DG         + +     ++EY+M+GK+Y
Sbjct: 37  MELIIDINSQIYPLKQNDKVRLVLATTLREDGLADEGEYDPKAEYPRIKQYEYVMYGKVY 96

Query: 61  KLADEGSGSD-LKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRK 109
           +L D+ +G+D  K+  YASFGGL M LKG+ ++   F VD N++LL++K
Sbjct: 97  RLEDDDTGTDGGKLAAYASFGGLLMRLKGEAINLHGFEVDMNLYLLMKK 145

[Close]
BLAST of Cp4.1LG01g09630 vs. Swiss-Prot
Match: RPAB3_CAEBR (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhabditis briggsae GN=rpb-8 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-18
Identity = 43/109 (39.45%), Postives = 72/109 (66.06%), Query Frame = 1 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M +++D+N++IYP+ + DK  +VL+ TL  DG         + +     ++EY+M+GK+Y
Sbjct: 37  MELIIDINSQIYPLKQNDKFRLVLATTLREDGLADEGEYDPKAEYPRIKQYEYVMYGKVY 96

Query: 61  KLADEGSGSD-LKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRK 109
           +L D+ SG+D  ++  YASFGGL M LKG+ ++   F VD N++LL++K
Sbjct: 97  RLEDDDSGTDGGQLAAYASFGGLLMRLKGEAINLHGFEVDMNLYLLMKK 145

[Close]
BLAST of Cp4.1LG01g09630 vs. Swiss-Prot
Match: RPAB3_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium discoideum GN=polr2h PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-17
Identity = 46/108 (42.59%), Postives = 71/108 (65.74%), Query Frame = 1 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M + +D+ T IYP+   ++  MVL+ +LN DG+   S S    K SLADK++Y+M+GK++
Sbjct: 37  MDLQIDIATHIYPLGH-ERFKMVLASSLNLDGSSDNSGSYDTNKPSLADKYDYVMYGKIF 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRK 109
           K   E S S  KV V+ASFGGL ++L+GDP +     +D  ++LL++K
Sbjct: 97  KYQKENSSS--KVSVFASFGGLLVLLQGDPRYLPGIELDARIYLLIKK 141

[Close]
BLAST of Cp4.1LG01g09630 vs. TrEMBL
Match: A0A0A0KZC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G031020 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 9.1e-52
Identity = 100/110 (90.91%), Postives = 107/110 (97.27%), Query Frame = 1 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M+MLLDVNTEIYPIDEG+K+LMVLSPTLNYDG+PVTSY  QEGKKSLADKFEYIMHGK Y
Sbjct: 37  MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT 111
           KL+DEGSGSDLKVEVYASFGGLQM+LKGDP+HCAKFRVDQNMFLLLRKLT
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 146

[Close]
BLAST of Cp4.1LG01g09630 vs. TrEMBL
Match: W9RLU0_9ROSA (DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Morus notabilis GN=L484_020129 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.3e-37
Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 1 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M M LDVNTEIYP+ EGD+ +MVLSPTLN++G PV  Y  Q  +KSLADKFEYIMHG LY
Sbjct: 37  MLMHLDVNTEIYPMKEGDRFVMVLSPTLNWNGVPVADYHKQAEQKSLADKFEYIMHGLLY 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT 111
           KL +EGSGSD KV +Y SFGGLQMML GDP  C KF+ DQ MFLL+RK++
Sbjct: 97  KLTEEGSGSDFKVGIYVSFGGLQMMLNGDPAQCTKFKHDQKMFLLIRKVS 146

[Close]
BLAST of Cp4.1LG01g09630 vs. TrEMBL
Match: M0U2U0_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.2e-34
Identity = 72/110 (65.45%), Postives = 91/110 (82.73%), Query Frame = 1 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           MYM LDVNTEIYP++ GDK  MVL+PTL+ DG P + Y  Q G+KSLADKFEY+MHGKLY
Sbjct: 37  MYMQLDVNTEIYPLNVGDKFTMVLTPTLSLDGTPDSGYFTQAGRKSLADKFEYVMHGKLY 96

Query: 61  KLADEGSGS-DLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKL 110
           K+++E SG  ++KVE+YASFGGL MMLKGDP + A+F +DQ +FLL+RK+
Sbjct: 97  KISEEASGGPNVKVEIYASFGGLLMMLKGDPSNAAQFELDQRLFLLMRKV 146

[Close]
BLAST of Cp4.1LG01g09630 vs. TrEMBL
Match: A0A162ADW3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013218 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.0e-34
Identity = 69/108 (63.89%), Postives = 88/108 (81.48%), Query Frame = 1 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           MYM LDVNT+IYP+ EGDK +MVL+ TLN DG P T Y    G+KSLADKFEY+M+GKLY
Sbjct: 37  MYMQLDVNTDIYPLHEGDKFMMVLASTLNLDGTPDTGYFTPGGRKSLADKFEYVMNGKLY 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRK 109
           ++++EGSG++LK ++Y SFGGL MMLKGDP   AKF +DQ +F+L+RK
Sbjct: 97  RISEEGSGANLKADIYVSFGGLLMMLKGDPSIAAKFELDQRLFILMRK 144

[Close]
BLAST of Cp4.1LG01g09630 vs. TrEMBL
Match: B3TLS5_ELAGV (RNA polymerase OS=Elaeis guineensis var. tenera PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-33
Identity = 70/109 (64.22%), Postives = 87/109 (79.82%), Query Frame = 1 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           MYM LDVNTEIYP+  GDK  MVL+PTL+ DG P + Y  Q  +KSLADKFEY+MHGKLY
Sbjct: 37  MYMQLDVNTEIYPLHVGDKFTMVLAPTLSLDGTPDSGYYMQGQRKSLADKFEYVMHGKLY 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKL 110
           K+++E SG ++KVE+YASFGGL MMLKGDP +   F +DQ +FLL+RK+
Sbjct: 97  KISEESSGPNVKVEIYASFGGLLMMLKGDPSNATNFELDQRLFLLMRKV 145

[Close]
BLAST of Cp4.1LG01g09630 vs. TAIR10
Match: AT1G54250.1 (AT1G54250.1 RNA polymerase Rpb8)

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-32
Identity = 65/109 (59.63%), Postives = 80/109 (73.39%), Query Frame = 1 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M+M LDVNTE+YP+  GDK  + L+PTLN DG P T Y     KK+LADK+EYIMHGKLY
Sbjct: 39  MFMHLDVNTEVYPLAVGDKFTLALAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLY 98

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKL 110
           K++ E  G   K E+Y SFGGL M+LKGDP H + F +DQ +FLL+RKL
Sbjct: 99  KIS-ERDGKTPKAELYVSFGGLLMLLKGDPAHISHFELDQRLFLLMRKL 146

[Close]
BLAST of Cp4.1LG01g09630 vs. TAIR10
Match: AT3G59600.1 (AT3G59600.1 RNA polymerase Rpb8)

HSP 1 Score: 133.7 bits (335), Expect = 7.1e-32
Identity = 63/109 (57.80%), Postives = 80/109 (73.39%), Query Frame = 1 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M+M LDVNTE+YP+  GDK  + ++PTLN DG P T Y     KK+LADK+EYIMHGKLY
Sbjct: 39  MFMHLDVNTEVYPLAVGDKFTLAMAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLY 98

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKL 110
           K++ E  G   K E+Y SFGGL M+L+GDP H + F +DQ +FLL+RKL
Sbjct: 99  KIS-ERDGKTPKAELYVSFGGLLMLLQGDPAHISHFELDQRLFLLMRKL 146

[Close]
BLAST of Cp4.1LG01g09630 vs. NCBI nr
Match: gi|449462830|ref|XP_004149143.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-51
Identity = 100/110 (90.91%), Postives = 107/110 (97.27%), Query Frame = 1 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M+MLLDVNTEIYPIDEG+K+LMVLSPTLNYDG+PVTSY  QEGKKSLADKFEYIMHGK Y
Sbjct: 37  MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT 111
           KL+DEGSGSDLKVEVYASFGGLQM+LKGDP+HCAKFRVDQNMFLLLRKLT
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 146

[Close]
BLAST of Cp4.1LG01g09630 vs. NCBI nr
Match: gi|659107632|ref|XP_008453774.1| (PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Cucumis melo])

HSP 1 Score: 206.5 bits (524), Expect = 2.5e-50
Identity = 99/110 (90.00%), Postives = 106/110 (96.36%), Query Frame = 1 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M MLLDVNTEIYPIDEG+K+LMVLSPTLNYDG+PVTSY  QEGKKSLADKFEYIMHGK Y
Sbjct: 37  MSMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT 111
           KL+DEGSGSDLKVEVYASFGGLQM+LKGDP++CAKFRVDQNMFLLLRKLT
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPINCAKFRVDQNMFLLLRKLT 146

[Close]
BLAST of Cp4.1LG01g09630 vs. NCBI nr
Match: gi|703111783|ref|XP_010099941.1| (DNA-directed RNA polymerases I, II, and III subunit rpabc3 [Morus notabilis])

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-36
Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 1 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M M LDVNTEIYP+ EGD+ +MVLSPTLN++G PV  Y  Q  +KSLADKFEYIMHG LY
Sbjct: 37  MLMHLDVNTEIYPMKEGDRFVMVLSPTLNWNGVPVADYHKQAEQKSLADKFEYIMHGLLY 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT 111
           KL +EGSGSD KV +Y SFGGLQMML GDP  C KF+ DQ MFLL+RK++
Sbjct: 97  KLTEEGSGSDFKVGIYVSFGGLQMMLNGDPAQCTKFKHDQKMFLLIRKVS 146

[Close]
BLAST of Cp4.1LG01g09630 vs. NCBI nr
Match: gi|720039235|ref|XP_010268240.1| (PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Nelumbo nucifera])

HSP 1 Score: 153.3 bits (386), Expect = 2.5e-34
Identity = 70/109 (64.22%), Postives = 90/109 (82.57%), Query Frame = 1 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           MYM LDVNTEIYP+   DK  MVL+PTL+ DG P + Y  Q G+KSLADKFEY+MHGKLY
Sbjct: 37  MYMQLDVNTEIYPLRVDDKFTMVLAPTLSLDGTPDSGYYTQVGRKSLADKFEYVMHGKLY 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKL 110
           K+++EGSG+++KVE+YAS+GGL M+LKGDP + A F +DQ +FLL+RK+
Sbjct: 97  KISEEGSGANVKVEIYASYGGLLMLLKGDPSNAANFELDQRLFLLMRKV 145

[Close]
BLAST of Cp4.1LG01g09630 vs. NCBI nr
Match: gi|695060411|ref|XP_009418594.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 152.9 bits (385), Expect = 3.2e-34
Identity = 72/110 (65.45%), Postives = 91/110 (82.73%), Query Frame = 1 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           MYM LDVNTEIYP++ GDK  MVL+PTL+ DG P + Y  Q G+KSLADKFEY+MHGKLY
Sbjct: 37  MYMQLDVNTEIYPLNVGDKFTMVLTPTLSLDGTPDSGYFTQAGRKSLADKFEYVMHGKLY 96

Query: 61  KLADEGSGS-DLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKL 110
           K+++E SG  ++KVE+YASFGGL MMLKGDP + A+F +DQ +FLL+RK+
Sbjct: 97  KISEEASGGPNVKVEIYASFGGLLMMLKGDPSNAAQFELDQRLFLLMRKV 146

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g09630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPB8A_ARATH2.6e-3159.63DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana GN=NRPB... [more]
RPB8B_ARATH1.3e-3057.80DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana GN=... [more]
RPAB3_CAEEL1.1e-1839.45Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhab... [more]
RPAB3_CAEBR3.2e-1839.45Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhab... [more]
RPAB3_DICDI1.6e-1742.59DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium disc... [more]
BLAST of Cp4.1LG01g09630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZC2_CUCSA9.1e-5290.91Uncharacterized protein OS=Cucumis sativus GN=Csa_4G031020 PE=4 SV=1[more]
W9RLU0_9ROSA8.3e-3769.09DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Morus notabilis GN... [more]
M0U2U0_MUSAM2.2e-3465.45Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
A0A162ADW3_DAUCA5.0e-3463.89Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013218 PE=4 SV=1[more]
B3TLS5_ELAGV1.1e-3364.22RNA polymerase OS=Elaeis guineensis var. tenera PE=2 SV=1[more]
BLAST of Cp4.1LG01g09630 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G54250.11.4e-3259.63 RNA polymerase Rpb8[more]
AT3G59600.17.1e-3257.80 RNA polymerase Rpb8[more]
BLAST of Cp4.1LG01g09630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462830|ref|XP_004149143.1|1.3e-5190.91PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucumis sa... [more]
gi|659107632|ref|XP_008453774.1|2.5e-5090.00PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Cucumis melo][more]
gi|703111783|ref|XP_010099941.1|1.2e-3669.09DNA-directed RNA polymerases I, II, and III subunit rpabc3 [Morus notabilis][more]
gi|720039235|ref|XP_010268240.1|2.5e-3464.22PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Nelumbo nucife... [more]
gi|695060411|ref|XP_009418594.1|3.2e-3465.45PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like [Musa acumi... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR005570RNA_pol_Rpb8
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0030001 metal ion transport
biological_process GO:0006383 transcription from RNA polymerase III promoter
biological_process GO:0006366 transcription from RNA polymerase II promoter
cellular_component GO:0005730 nucleolus
cellular_component GO:0005575 cellular_component
cellular_component GO:0009536 plastid
cellular_component GO:0005736 DNA-directed RNA polymerase I complex
cellular_component GO:0005665 DNA-directed RNA polymerase II, core complex
cellular_component GO:0005666 DNA-directed RNA polymerase III complex
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g09630.1Cp4.1LG01g09630.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8PIRPIRSF000779RPB8coord: 1..110
score: 6.0
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..109
score: 1.0
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 1..108
score: 4.1
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 1..108
score: 3.2
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 1..108
score: 1.6
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 1..108
score: 3.26

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g09630Cucsa.029450Cucumber (Gy14) v1cgycpeB0001
Cp4.1LG01g09630CmaCh16G006790Cucurbita maxima (Rimu)cmacpeB350
Cp4.1LG01g09630CmaCh04G007950Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g09630CmoCh16G007370Cucurbita moschata (Rifu)cmocpeB312
Cp4.1LG01g09630CmoCh04G008550Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g09630Csa4G031020Cucumber (Chinese Long) v2cpecuB407
Cp4.1LG01g09630MELO3C017579Melon (DHL92) v3.5.1cpemeB416
Cp4.1LG01g09630CSPI04G04750Wild cucumber (PI 183967)cpecpiB406
Cp4.1LG01g09630MELO3C017579.2Melon (DHL92) v3.6.1cpemedB487
Cp4.1LG01g09630CsaV3_UNG188480Cucumber (Chinese Long) v3cpecucB0564
Cp4.1LG01g09630CsaV3_4G004830Cucumber (Chinese Long) v3cpecucB0504
Cp4.1LG01g09630Bhi01G001922Wax gourdcpewgoB0511
Cp4.1LG01g09630CsGy4G004680Cucumber (Gy14) v2cgybcpeB509
Cp4.1LG01g09630Carg05790Silver-seed gourdcarcpeB1417
Cp4.1LG01g09630Carg14195Silver-seed gourdcarcpeB1302
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g09630Cp4.1LG14g01400Cucurbita pepo (Zucchini)cpecpeB233
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g09630Cucurbita pepo (Zucchini)cpecpeB073
Cp4.1LG01g09630Cucurbita pepo (Zucchini)cpecpeB385
Cp4.1LG01g09630Cucurbita maxima (Rimu)cmacpeB876
Cp4.1LG01g09630Cucurbita moschata (Rifu)cmocpeB613
Cp4.1LG01g09630Cucurbita moschata (Rifu)cmocpeB813
Cp4.1LG01g09630Wild cucumber (PI 183967)cpecpiB403
Cp4.1LG01g09630Wild cucumber (PI 183967)cpecpiB468
Cp4.1LG01g09630Cucumber (Chinese Long) v2cpecuB405
Cp4.1LG01g09630Bottle gourd (USVL1VR-Ls)cpelsiB375
Cp4.1LG01g09630Bottle gourd (USVL1VR-Ls)cpelsiB377
Cp4.1LG01g09630Watermelon (Charleston Gray)cpewcgB374
Cp4.1LG01g09630Watermelon (Charleston Gray)cpewcgB404
Cp4.1LG01g09630Watermelon (97103) v1cpewmB406
Cp4.1LG01g09630Watermelon (97103) v1cpewmB443
Cp4.1LG01g09630Melon (DHL92) v3.5.1cpemeB432
Cp4.1LG01g09630Melon (DHL92) v3.5.1cpemeB434