CsGy4G000250 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G000250
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr4 : 177223 .. 178456 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAGAAGACGCTCGTCGTGTTAGCAATGGTGTTCGTGCTACTCGTAGCCAATTCTGTCAGAGCCACAGACATCATCACCATTGATGAGGCGACCGAAGTCAATTCCGATGAGGTCAACAAAGCTGGTTTGGAGATGATATTTGCCCCAAGAAAATTAAAGCTGAGAAATGGAGGGTCTAGGCTTGGAGTATGTCTGCTTGTAGGCAAGCCATGCTTGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTGTTCCACTACTAAATATTGGGTACTGTGGCTTTCTTTGATTGTTAGTTAATGTATGGTAATGATGATGTCCCTCAAGAATAAAATGGAGGAGCCCTGTGTTTATGATGTGAAAAAATAATAAGAATAATTAAAATGGTTGAGGCCAAGTTTGGGATCTCTCTTATGTGTGAGATTCTATGGTAATATCTTTTTCTATGGGATGTTGTATTTGCTTGTGATTAATATTACAAATGTTTTGGGATTTCTGCATGTGACGTTCTTATTTTAGGATCTATGGTTGAAGTTTGTAATATTAAAAAGTTTATTGGTTTTAAGAGAGAGGCATGTAAACTAGAGCTGTCAAATTGAGATACTCCAACTAGGTTGAAGCATATGACGAGAAAAACAAATGTTTAAATGGAGATTTTGTACAAATGATCTATTTCGAGTAGCTCAAATGACATACAAGACAAAAACTTTCCAAATTCATGAACCATTATTCCTCAAATAATAGAAAATGGTGCATCAACAAACACAAACCTAGGAATAATTTTTCCACTTGACTCGTCTAAAAATACAAATGTGAAAAACATTTACATGGTTAACACCGAAGACCTAGTTAATGACCTCGCCATATAAAAGGAAAAGAATTAGCACACTGCAGTCCTACAAGAACGAACTACGAAGAAAAAATAAGTGCAAAACCAACTAAAAGAAGTGATAATGGAGATGATGAGGAAGAAGCTCATTGTATTAGCAATGGCAGTCTGTGTGCTGTTCATGGCCACCTCCGTCTTCATTCGTGAAGTGATGGCTTCAGTTCGAACGAGGGCGACCGAGTTGATTCAAACATGGTATTTGTCCCAAGAAAAATGTTAAAAGATGGAGAACTTGGGGTTGGAGCAATATGCCTGATTTTTGGACAGCCATGCTGGGAATGATGCAGACTGTCCTCCTGTGTGCCGTCGCATTCAAATGTGTGGGATTCTCTGA

mRNA sequence

ATGAGCAAGAAGACGCTCGTCGTGTTAGCAATGGTGTTCGTGCTACTCGTAGCCAATTCTGTCAGAGCCACAGACATCATCACCATTGATGAGGCGACCGAAGTCAATTCCGATGAGGTCAACAAAGCTGGTTTGGAGATGATATTTGCCCCAAGAAAATTAAAGCTGAGAAATGGAGGGTCTAGGCTTGGAGTATGTCTGCTTGTAGGCAAGCCATGCTTGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTGTTCCACTACTAAATATTGGCCATGCTGGGAATGATGCAGACTGTCCTCCTGTGTGCCGTCGCATTCAAATGTGTGGGATTCTCTGA

Coding sequence (CDS)

ATGAGCAAGAAGACGCTCGTCGTGTTAGCAATGGTGTTCGTGCTACTCGTAGCCAATTCTGTCAGAGCCACAGACATCATCACCATTGATGAGGCGACCGAAGTCAATTCCGATGAGGTCAACAAAGCTGGTTTGGAGATGATATTTGCCCCAAGAAAATTAAAGCTGAGAAATGGAGGGTCTAGGCTTGGAGTATGTCTGCTTGTAGGCAAGCCATGCTTGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTGTTCCACTACTAAATATTGGCCATGCTGGGAATGATGCAGACTGTCCTCCTGTGTGCCGTCGCATTCAAATGTGTGGGATTCTCTGA

Protein sequence

MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGGSRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGHAGNDADCPPVCRRIQMCGIL

Homology

[Close]

BLAST of CsGy4G000250 vs. NCBI nr
Match: KGN52756.1 (hypothetical protein Csa_4G000770 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 3.1e-44
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGG 60
          MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGG
Sbjct: 1  MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGG 60

Query: 61 SRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGHAG 98
          SRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIG+ G
Sbjct: 61 SRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCG 97

[Close]

BLAST of CsGy4G000250 vs. NCBI nr
Match: KGN52755.1 (hypothetical protein Csa_4G000760 [Cucumis sativus])

HSP 1 Score: 53.5 bits (127), Expect = 5.4e-04
Identity = 24/53 (45.28%), Postives = 31/53 (58.49%), Query Frame = 0


Query: 63  LGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGHAGNDADCPPVCRRIQMCGIL 116
           + VC+L     +   +  +    +   L+   HAGNDADCPPVCRR QMCGIL
Sbjct: 13  MAVCVLFMATSIFIREVMASVRTRATELIQTCHAGNDADCPPVCRRNQMCGIL 65

[Close]

BLAST of CsGy4G000250 vs. TrEMBL
Match: tr|A0A0A0KY29|A0A0A0KY29_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000770 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.1e-44
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGG 60
          MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGG
Sbjct: 1  MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGG 60

Query: 61 SRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGHAG 98
          SRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIG+ G
Sbjct: 61 SRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCG 97

[Close]

BLAST of CsGy4G000250 vs. TrEMBL
Match: tr|A0A0A0KSZ7|A0A0A0KSZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000760 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.6e-04
Identity = 24/53 (45.28%), Postives = 31/53 (58.49%), Query Frame = 0


Query: 63  LGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGHAGNDADCPPVCRRIQMCGIL 116
           + VC+L     +   +  +    +   L+   HAGNDADCPPVCRR QMCGIL
Sbjct: 13  MAVCVLFMATSIFIREVMASVRTRATELIQTCHAGNDADCPPVCRRNQMCGIL 65

The following BLAST results are available for this feature:

BLAST of CsGy4G000250 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52756.1	3.1e-44	97.94	hypothetical protein Csa_4G000770 [Cucumis sativus]	[more]
KGN52755.1	5.4e-04	45.28	hypothetical protein Csa_4G000760 [Cucumis sativus]	[more]

BLAST of CsGy4G000250 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G000250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G000250 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KY29\|A0A0A0KY29_CUCSA	2.1e-44	97.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000770 PE=4 SV=1	[more]
tr\|A0A0A0KSZ7\|A0A0A0KSZ7_CUCSA	3.6e-04	45.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000760 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G000250.1	CsGy4G000250.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G000250	Cla006435	Watermelon (97103) v1	cgybwmB269
CsGy4G000250	Csa4G000770	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G000250	MELO3C018009	Melon (DHL92) v3.5.1	cgybmeB269
CsGy4G000250	ClCG10G010290	Watermelon (Charleston Gray)	cgybwcgB251
CsGy4G000250	CSPI04G00260	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G000250	MELO3C018009.2	Melon (DHL92) v3.6.1	cgybmedB266
CsGy4G000250	CsaV3_4G000250	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G000250	Cla97C10G193240	Watermelon (97103) v2	cgybwmbB259
CsGy4G000250	Bhi11G000934	Wax gourd	cgybwgoB342

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G000250	Cucumber (Gy14) v2	cgybcgybB122
CsGy4G000250	Cucurbita maxima (Rimu)	cgybcmaB494
CsGy4G000250	Cucurbita maxima (Rimu)	cgybcmaB543
CsGy4G000250	Cucurbita moschata (Rifu)	cgybcmoB465
CsGy4G000250	Cucurbita moschata (Rifu)	cgybcmoB517
CsGy4G000250	Cucurbita pepo (Zucchini)	cgybcpeB485
CsGy4G000250	Cucurbita pepo (Zucchini)	cgybcpeB504
CsGy4G000250	Cucumber (Chinese Long) v2	cgybcuB177
CsGy4G000250	Bottle gourd (USVL1VR-Ls)	cgyblsiB257
CsGy4G000250	Melon (DHL92) v3.5.1	cgybmeB267
CsGy4G000250	Wild cucumber (PI 183967)	cgybcpiB178
CsGy4G000250	Silver-seed gourd	carcgybB0309
CsGy4G000250	Silver-seed gourd	carcgybB0383
CsGy4G000250	Cucumber (Chinese Long) v3	cgybcucB193
CsGy4G000250	Cucumber (Chinese Long) v3	cgybcucB177