MELO3C018009 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018009
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTrypsin inhibitor 1
Locationchr7 : 26398572 .. 26400108 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAACTAAAATTCCATAAATACAAGAAAGAACTAAAAAGAAAACCCATCTTTCAAACCCAAACCATCCACAGTATAGCCAAAGAAAAAGAGAGAGAGATGAGCAAGAAGGCGCTTGTCGTGTTAGCAATGGCGTTCGTGCTACTCGTAGCTAATTCAGTCAGAGCCACAGACATTATCACCATTGATGAGGTGATTGAAGAAGTCAATTCCGATGAGGTCAACAGAGCTGGTTTAGAGAAGATATTTGCCCCAAGAAAATTAAAGTTGAAAAATGGAGGGCCTAGGCTTGGAGTATGTCTGCTTGTAGGCAAGCCATGCATGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTGTTCCACTACTAGATATTGGGTACTGTGGCTTTCTTTGATTGTTAATAATGTATGAAGATGATGATGATGATGATGTCCCTCAAGAATAAAACGGAGGAGCCCTATGTTTATGAAGATGTGAAGAAATAAGAATAAATAATATGGTTGAGGCCAAGTTTGGGATCTCTCTCTTATGTGTGAGATTCTATGGTAATCTCTTTTTCTGTGGAATTTAATTTTGTATTGCTTGTGATTAATATTACAAATGTTTTGGGATTTCTGTATGAGACGTTCTTATTTTAGGATCTATGGTTGAAGTTTGTCATATTCAAAAGTTAATCGGTTTCAATTCTTAAGGGATGCATGTAAACTAGAACTATTAAATTGAGATATTCCAACCAGGTTGAAACATAGATGCATGGGACAAGAAAATCAAAAGTTTAAACGAAGATTTTGTGCGGATGGTTTATTTTGAGGAACCCAAATGAAAAATGACCTACTCCTAGATTTTCAAATTTACGAGAAAATCAAAAGTTTAAATAGTAACCTCGCTTTTCTCTCTCTTCTTTTTTTTTTTTTCTATTTTTGTAATGAACTTTCATAGATCAAGGACTCTTGACTGATAAGTGTGTAATCGTATCTTTTGCTAGATATATGATGCAGGAAAATAAACTACATGCCATTGGCCGCTCCTTAGTTGTCGACCAATAATTTGTACATACAAAACAAAAACTTTCCAAATTCAAGAACTAATATTTCTCAAATAATAGAAAGTCGAACATCCTCAAGCACAAACCTAGGTATAATTTATCCACCTGACTCGTCTAGAAATACAAATGTGAAAAACATTTATCAACACCGAAGACCTAGTTACGTTAATGACCTCGCCACATAAAAGGAAAAGAATTAGCACACTGCAGTCCTACAAGTTCGAACTACAAAGAAAAAAGAAGTGCCAACAAACAAGAAGAAGTGATAATGGAGATGATGAGGAAGAAGCTCATTGTCTTAGCAATGGCAGTCTGCGTGCTGCGGCCACCTCCGTTCAAACTGATGGCTTCAGTTTGAATGAGGGCAACCGAGTTGATTCAAACATGATTATTCGTCCAAAGAAAAATGTTAAAAGATGGAGAACTTGGGCTTGGAGCGATGATGGAGACTGTCTCCTGGTTGCCGTTGCAATCCTATTGT

mRNA sequence

ATGATCAAACTAAAATTCCATAAATACAAGAAAGAACTAAAAAGAAAACCCATCTTTCAAACCCAAACCATCCACAGTATAGCCAAAGAAAAAGAGAGAGAGATGAGCAAGAAGGCGCTTGTCGTGTTAGCAATGGCGTTCGTGCTACTCGTAGCTAATTCAGTCAGAGCCACAGACATTATCACCATTGATGAGGTGATTGAAGAAGTCAATTCCGATGAGGTCAACAGAGCTGGTTTAGAGAAGATATTTGCCCCAAGAAAATTAAAGTTGAAAAATGGAGGGCCTAGGCTTGGAGTATGTCTGCTTGTAGGCAAGCCATGCATGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTGTTCCACTACTAGATATTGGGTACTGTGGCTTTCTTTGATTGTTAATAATGTATGAAGATGATGATGATGATGATGTCCCTCAAGAATAAAACGGAGGAGCCCTATGTTTATGAAGATGTGAAGAAATAAGAATAAATAATATGGTTGAGGCCAAGTTTGGGATCTCTCTCTTATGTGTGAGATTCTATGATATATGATGCAGGAAAATAAACTACATGCCATTGGCCGCTCCTTAGTTGTCGACCAATAATTTGTACATACAAAACAAAAACTTTCCAAATTCAAGAACTAATATTTCTCAAATAATAGAAAGTCGAACATCCTCAAGCACAAACCTAGGTATAATTTATCCACCTGACTCGTCTAGAAATACAAATGTGAAAAACATTTATCAACACCGAAGACCTAGTTACGTTAATGACCTCGCCACATAAAAGGAAAAGAATTAGCACACTGCAGTCCTACAAGTTCGAACTACAAAGAAAAAAGAAGTGCCAACAAACAAGAAGAAGTGATAATGGAGATGATGAGGAAGAAGCTCATTGTCTTAGCAATGGCAGTCTGCGTGCTGCGGCCACCTCCGTTCAAACTGATGGCTTCAGTTTGAATGAGGGCAACCGAGTTGATTCAAACATGATTATTCGTCCAAAGAAAAATGTTAAAAGATGGAGAACTTGGGCTTGGAGCGATGATGGAGACTGTCTCCTGGTTGCCGTTGCAATCCTATTGT

Coding sequence (CDS)

ATGATCAAACTAAAATTCCATAAATACAAGAAAGAACTAAAAAGAAAACCCATCTTTCAAACCCAAACCATCCACAGTATAGCCAAAGAAAAAGAGAGAGAGATGAGCAAGAAGGCGCTTGTCGTGTTAGCAATGGCGTTCGTGCTACTCGTAGCTAATTCAGTCAGAGCCACAGACATTATCACCATTGATGAGGTGATTGAAGAAGTCAATTCCGATGAGGTCAACAGAGCTGGTTTAGAGAAGATATTTGCCCCAAGAAAATTAAAGTTGAAAAATGGAGGGCCTAGGCTTGGAGTATGTCTGCTTGTAGGCAAGCCATGCATGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTGTTCCACTACTAGATATTGGGTACTGTGGCTTTCTTTGA

Protein sequence

MIKLKFHKYKKELKRKPIFQTQTIHSIAKEKEREMSKKALVVLAMAFVLLVANSVRATDIITIDEVIEEVNSDEVNRAGLEKIFAPRKLKLKNGGPRLGVCLLVGKPCMSDADCPSGCYCKPVPLLDIGYCGFL*
Homology
[Close]
BLAST of MELO3C018009 vs. TrEMBL
Match: A0A0A0KY29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000770 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-42
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 35  MSKKALVVLAMAFVLLVANSVRATDIITIDEVIEEVNSDEVNRAGLEKIFAPRKLKLKNG 94
           MSKK LVVLAM FVLLVANSVRATDIITIDE  E VNSDEVN+AGLE IFAPRKLKL+NG
Sbjct: 1   MSKKTLVVLAMVFVLLVANSVRATDIITIDEATE-VNSDEVNKAGLEMIFAPRKLKLRNG 60

Query: 95  GPRLGVCLLVGKPCMSDADCPSGCYCKPVPLLDIGYCGFL 135
           G RLGVCLLVGKPC+SDADCPSGCYCKPVPLL+IGYCGFL
Sbjct: 61  GSRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL 99

[Close]
BLAST of MELO3C018009 vs. NCBI nr
Match: gi|700197598|gb|KGN52756.1| (hypothetical protein Csa_4G000770 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 2.3e-42
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 35  MSKKALVVLAMAFVLLVANSVRATDIITIDEVIEEVNSDEVNRAGLEKIFAPRKLKLKNG 94
           MSKK LVVLAM FVLLVANSVRATDIITIDE  E VNSDEVN+AGLE IFAPRKLKL+NG
Sbjct: 1   MSKKTLVVLAMVFVLLVANSVRATDIITIDEATE-VNSDEVNKAGLEMIFAPRKLKLRNG 60

Query: 95  GPRLGVCLLVGKPCMSDADCPSGCYCKPVPLLDIGYCGFL 135
           G RLGVCLLVGKPC+SDADCPSGCYCKPVPLL+IGYCGFL
Sbjct: 61  GSRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL 99

The following BLAST results are available for this feature:
BLAST of MELO3C018009 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY29_CUCSA1.6e-4289.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000770 PE=4 SV=1[more]
BLAST of MELO3C018009 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197598|gb|KGN52756.1|2.3e-4289.00hypothetical protein Csa_4G000770 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU43871melon EST collection version 4.0transcribed_cluster
MU54806melon EST collection version 4.0transcribed_cluster
MU55667melon EST collection version 4.0transcribed_cluster
MU61952melon EST collection version 4.0transcribed_cluster
MU62048melon EST collection version 4.0transcribed_cluster
MU62268melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018009T1MELO3C018009T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU54806MU54806transcribed_cluster
MU43871MU43871transcribed_cluster
MU61952MU61952transcribed_cluster
MU62048MU62048transcribed_cluster
MU62268MU62268transcribed_cluster
MU55667MU55667transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C018009Csa4G000770Cucumber (Chinese Long) v2cumeB312
MELO3C018009Cla006435Watermelon (97103) v1mewmB497
MELO3C018009ClCG10G010290Watermelon (Charleston Gray)mewcgB453
MELO3C018009Cla97C10G193240Watermelon (97103) v2mewmbB463
MELO3C018009CSPI04G00260Wild cucumber (PI 183967)cpimeB310
MELO3C018009CsGy4G000250Cucumber (Gy14) v2cgybmeB269
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C018009Wax gourdmewgoB564
MELO3C018009Melon (DHL92) v3.5.1memeB094
MELO3C018009Melon (DHL92) v3.5.1memeB154
MELO3C018009Cucumber (Gy14) v1cgymeB383
MELO3C018009Cucumber (Gy14) v1cgymeB490
MELO3C018009Cucumber (Gy14) v1cgymeB569
MELO3C018009Cucurbita maxima (Rimu)cmameB303
MELO3C018009Cucurbita maxima (Rimu)cmameB700
MELO3C018009Cucurbita moschata (Rifu)cmomeB298
MELO3C018009Cucurbita moschata (Rifu)cmomeB475
MELO3C018009Cucurbita moschata (Rifu)cmomeB692
MELO3C018009Wild cucumber (PI 183967)cpimeB308
MELO3C018009Wild cucumber (PI 183967)cpimeB573
MELO3C018009Cucumber (Chinese Long) v2cumeB309
MELO3C018009Cucumber (Chinese Long) v2cumeB562
MELO3C018009Watermelon (Charleston Gray)mewcgB472
MELO3C018009Watermelon (97103) v1mewmB537
MELO3C018009Cucurbita pepo (Zucchini)cpemeB201
MELO3C018009Cucurbita pepo (Zucchini)cpemeB242
MELO3C018009Cucurbita pepo (Zucchini)cpemeB422
MELO3C018009Bottle gourd (USVL1VR-Ls)lsimeB268
MELO3C018009Bottle gourd (USVL1VR-Ls)lsimeB269
MELO3C018009Cucumber (Gy14) v2cgybmeB268
MELO3C018009Cucumber (Gy14) v2cgybmeB502
MELO3C018009Silver-seed gourdcarmeB0297
MELO3C018009Silver-seed gourdcarmeB0383
MELO3C018009Cucumber (Chinese Long) v3cucmeB310
MELO3C018009Cucumber (Chinese Long) v3cucmeB315
MELO3C018009Cucumber (Chinese Long) v3cucmeB585
MELO3C018009Watermelon (97103) v2mewmbB476