CSPI04G00260 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G00260
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 174092 .. 174585 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCTCCAAATGATCAAACTAAAATTCCATAAATAGAAGAAAGAACTTAAGCAAAATCCCTCTTTAAATCCCAAACCATCCATAGTATAGCCAAAGAAAGAGAGAGATCTAGAGAGCGAGATCATGAGCAAGAAGACGCTCGTCGTGTTAGCAATGGTGTTCGTGCTACTCGTAGCCAATTCTGTCAGAGCCACAGACATCATCACCATTGATGAGGCGACCGAAGTCAATTCCGATGAGGTCAACAAAGCTGGTTTGGAGATGATATTTGCCCCAAGAAAATTAAAGCTGAGAAATGGAGGGTCTAGGCTTGGAGTATGTCTGCTTGTAGGCAAGCCATGCTTGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTGTTCCACTACTAAATATTGGGTACTGTGGCTTTCTTTGATTGTTAGTTAATGTATGGTAATGATGATGTCCCTCAAGAATAAAATGGAGGAGCCCTGTGTTTATGATGTG

mRNA sequence

ATGAGCAAGAAGACGCTCGTCGTGTTAGCAATGGTGTTCGTGCTACTCGTAGCCAATTCTGTCAGAGCCACAGACATCATCACCATTGATGAGGCGACCGAAGTCAATTCCGATGAGGTCAACAAAGCTGGTTTGGAGATGATATTTGCCCCAAGAAAATTAAAGCTGAGAAATGGAGGGTCTAGGCTTGGAGTATGTCTGCTTGTAGGCAAGCCATGCTTGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTGTTCCACTACTAAATATTGGGTACTGTGGCTTTCTTTGA

Coding sequence (CDS)

ATGAGCAAGAAGACGCTCGTCGTGTTAGCAATGGTGTTCGTGCTACTCGTAGCCAATTCTGTCAGAGCCACAGACATCATCACCATTGATGAGGCGACCGAAGTCAATTCCGATGAGGTCAACAAAGCTGGTTTGGAGATGATATTTGCCCCAAGAAAATTAAAGCTGAGAAATGGAGGGTCTAGGCTTGGAGTATGTCTGCTTGTAGGCAAGCCATGCTTGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTGTTCCACTACTAAATATTGGGTACTGTGGCTTTCTTTGA
Homology
[Close]
BLAST of CSPI04G00260 vs. TrEMBL
Match: A0A0A0KY29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000770 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.2e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGG 60
           MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGG
Sbjct: 1   MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGG 60

Query: 61  SRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL 100
           SRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL
Sbjct: 61  SRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL 99

[Close]
BLAST of CSPI04G00260 vs. NCBI nr
Match: gi|700197598|gb|KGN52756.1| (hypothetical protein Csa_4G000770 [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 1.8e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGG 60
           MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGG
Sbjct: 1   MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGG 60

Query: 61  SRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL 100
           SRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL
Sbjct: 61  SRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL 99

The following BLAST results are available for this feature:
BLAST of CSPI04G00260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G00260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY29_CUCSA1.2e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000770 PE=4 SV=1[more]
BLAST of CSPI04G00260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G00260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197598|gb|KGN52756.1|1.8e-47100.00hypothetical protein Csa_4G000770 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G00260.1CSPI04G00260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G00260Cla006435Watermelon (97103) v1cpiwmB291
CSPI04G00260Csa4G000770Cucumber (Chinese Long) v2cpicuB182
CSPI04G00260MELO3C018009Melon (DHL92) v3.5.1cpimeB310
CSPI04G00260ClCG10G010290Watermelon (Charleston Gray)cpiwcgB280
CSPI04G00260MELO3C018009.2Melon (DHL92) v3.6.1cpimedB301
CSPI04G00260CsaV3_4G000250Cucumber (Chinese Long) v3cpicucB213
CSPI04G00260Cla97C10G193240Watermelon (97103) v2cpiwmbB278
CSPI04G00260Bhi11G000934Wax gourdcpiwgoB358
CSPI04G00260CsGy4G000250Cucumber (Gy14) v2cgybcpiB168
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G00260Cucumber (Chinese Long) v2cpicuB188
CSPI04G00260Cucumber (Chinese Long) v2cpicuB207
CSPI04G00260Melon (DHL92) v3.5.1cpimeB276
CSPI04G00260Melon (DHL92) v3.5.1cpimeB309
CSPI04G00260Cucurbita pepo (Zucchini)cpecpiB221
CSPI04G00260Cucurbita pepo (Zucchini)cpecpiB399
CSPI04G00260Bottle gourd (USVL1VR-Ls)cpilsiB274
CSPI04G00260Cucumber (Gy14) v2cgybcpiB179
CSPI04G00260Silver-seed gourdcarcpiB0328
CSPI04G00260Silver-seed gourdcarcpiB0407
CSPI04G00260Cucumber (Chinese Long) v3cpicucB224
CSPI04G00260Watermelon (97103) v2cpiwmbB296
CSPI04G00260Wild cucumber (PI 183967)cpicpiB151
CSPI04G00260Wild cucumber (PI 183967)cpicpiB169
CSPI04G00260Cucumber (Gy14) v1cgycpiB447
CSPI04G00260Cucumber (Gy14) v1cgycpiB522
CSPI04G00260Cucurbita maxima (Rimu)cmacpiB338
CSPI04G00260Cucurbita maxima (Rimu)cmacpiB715
CSPI04G00260Cucurbita moschata (Rifu)cmocpiB329
CSPI04G00260Cucurbita moschata (Rifu)cmocpiB709