CsaV3_4G000250 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G000250
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 172895 .. 173194 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAAGAAGACGCTCGTCGTGTTAGCAATGGTGTTCGTGCTACTCGTAGCCAATTCTGTCAGAGCCACAGACATCATCACCATTGATGAGGCGACCGAAGTCAATTCCGATGAGGTCAACAAAGCTGGTTTGGAGATGATATTTGCCCCAAGAAAATTAAAGCTGAGAAATGGAGGGTCTAGGCTTGGAGTATGTCTGCTTGTAGGCAAGCCATGCTTGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTGTTCCACTACTAAATATTGGGTACTGTGGCTTTCTTTGA

mRNA sequence

ATGAGCAAGAAGACGCTCGTCGTGTTAGCAATGGTGTTCGTGCTACTCGTAGCCAATTCTGTCAGAGCCACAGACATCATCACCATTGATGAGGCGACCGAAGTCAATTCCGATGAGGTCAACAAAGCTGGTTTGGAGATGATATTTGCCCCAAGAAAATTAAAGCTGAGAAATGGAGGGTCTAGGCTTGGAGTATGTCTGCTTGTAGGCAAGCCATGCTTGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTGTTCCACTACTAAATATTGGGTACTGTGGCTTTCTTTGA

Coding sequence (CDS)

ATGAGCAAGAAGACGCTCGTCGTGTTAGCAATGGTGTTCGTGCTACTCGTAGCCAATTCTGTCAGAGCCACAGACATCATCACCATTGATGAGGCGACCGAAGTCAATTCCGATGAGGTCAACAAAGCTGGTTTGGAGATGATATTTGCCCCAAGAAAATTAAAGCTGAGAAATGGAGGGTCTAGGCTTGGAGTATGTCTGCTTGTAGGCAAGCCATGCTTGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTGTTCCACTACTAAATATTGGGTACTGTGGCTTTCTTTGA

Protein sequence

MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGGSRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL
Homology
[Close]
BLAST of CsaV3_4G000250 vs. NCBI nr
Match: KGN52756.1 (hypothetical protein Csa_4G000770 [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 3.4e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGG 60
           MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGG
Sbjct: 1   MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGG 60

Query: 61  SRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL 100
           SRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL
Sbjct: 61  SRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL 99

[Close]
BLAST of CsaV3_4G000250 vs. TrEMBL
Match: tr|A0A0A0KY29|A0A0A0KY29_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000770 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.3e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGG 60
           MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGG
Sbjct: 1   MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKAGLEMIFAPRKLKLRNGG 60

Query: 61  SRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL 100
           SRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL
Sbjct: 61  SRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL 99

The following BLAST results are available for this feature:
BLAST of CsaV3_4G000250 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52756.13.4e-47100.00hypothetical protein Csa_4G000770 [Cucumis sativus][more]
BLAST of CsaV3_4G000250 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G000250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G000250 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KY29|A0A0A0KY29_CUCSA2.3e-47100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000770 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G000250.1CsaV3_4G000250.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G000250CSPI04G00260Wild cucumber (PI 183967)cpicucB213
CsaV3_4G000250Cucsa.298340Cucumber (Gy14) v1cgycucB460
CsaV3_4G000250CsGy4G000250Cucumber (Gy14) v2cgybcucB171
CsaV3_4G000250Cla006435Watermelon (97103) v1cucwmB300
CsaV3_4G000250MELO3C018007Melon (DHL92) v3.5.1cucmeB315
CsaV3_4G000250ClCG10G010290Watermelon (Charleston Gray)cucwcgB279
CsaV3_4G000250MELO3C018007.2Melon (DHL92) v3.6.1cucmedB307
CsaV3_4G000250Cla97C10G193240Watermelon (97103) v2cucwmbB273
CsaV3_4G000250Bhi11G000934Wax gourdcucwgoB360
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G000250Cucumber (Chinese Long) v3cuccucB165
CsaV3_4G000250Silver-seed gourdcarcucB0328
CsaV3_4G000250Silver-seed gourdcarcucB0406
CsaV3_4G000250Cucumber (Gy14) v2cgybcucB178
CsaV3_4G000250Cucumber (Gy14) v2cgybcucB338
CsaV3_4G000250Cucumber (Gy14) v1cgycucB339
CsaV3_4G000250Cucumber (Gy14) v1cgycucB537
CsaV3_4G000250Cucurbita maxima (Rimu)cmacucB0388
CsaV3_4G000250Cucurbita maxima (Rimu)cmacucB0843
CsaV3_4G000250Cucurbita moschata (Rifu)cmocucB0385
CsaV3_4G000250Cucurbita moschata (Rifu)cmocucB0829
CsaV3_4G000250Cucurbita pepo (Zucchini)cpecucB0263
CsaV3_4G000250Cucurbita pepo (Zucchini)cpecucB0499
CsaV3_4G000250Wild cucumber (PI 183967)cpicucB227
CsaV3_4G000250Wild cucumber (PI 183967)cpicucB404
CsaV3_4G000250Bottle gourd (USVL1VR-Ls)cuclsiB296
CsaV3_4G000250Melon (DHL92) v3.5.1cucmeB282
CsaV3_4G000250Melon (DHL92) v3.5.1cucmeB314
CsaV3_4G000250Melon (DHL92) v3.5.1cucmeB345
CsaV3_4G000250Melon (DHL92) v3.6.1cucmedB275
CsaV3_4G000250Melon (DHL92) v3.6.1cucmedB306
CsaV3_4G000250Watermelon (Charleston Gray)cucwcgB308
CsaV3_4G000250Watermelon (97103) v2cucwmbB295