CsGy3G042530 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G042530
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	signal peptidase complex-like protein DTM1
Location	Chr3 : 39595759 .. 39596467 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAACGACGCCGCACTCAACTCCTCTCTCGTAATTTTGGCCCTCGCCGTCCTCCTCGTCGGAATCTCCACCTATTCCTTCAAGAAAATGGCCGTAACTTATTTCGTCGGCGTTTTCGCCATCGCCGGCGTTCTCTTACCCGATTGGTGTTTCTTTGACCGAGATTTCTCCCGGTGGACTTCTCCGGTCACCGAAGAGGAAAGGGAATCGTATAGGAACGCCACTGGATCTCACCTTCAAAGGTCGGTTATATATACCTTTAATTTCTTCTCTTCTCTCCGTGTTACTTTTTTCTTCTTTGATTGATGAAAAATTTGTGCGCAGAATTAGCAAAAACTCGCCCTCCAACTAATTTACTACATAATTATATATATGGTAACGTTTAAGTCTACTGGACTACCAAAGTATTACAAATTTCCTAAGGCTACACCTAAATATTTTTTTATTTAATTTTTAACTGGAAAATTTATAATATATATATTTTCTAATCTGGGTAAAATTTTAACTAAAATTACAAACTATTATAAGACTTCGTTAAAAATTGAAGAGAAAAAAAAAAAATATATATATATATATATTTTTTTTTCTAATCTTTGTTTGTTGGAAATCTTTTTGCAGGTTTAGAATTTATCCAATGAGACTAATTGTGTACGGCGTAGTGTACAGTACTGCTTTGTACAAGTGGTGGCAATACGTGACCAACTAA

mRNA sequence

ATGGCCAACGACGCCGCACTCAACTCCTCTCTCGTAATTTTGGCCCTCGCCGTCCTCCTCGTCGGAATCTCCACCTATTCCTTCAAGAAAATGGCCGTAACTTATTTCGTCGGCGTTTTCGCCATCGCCGGCGTTCTCTTACCCGATTGGTGTTTCTTTGACCGAGATTTCTCCCGGTGGACTTCTCCGGTCACCGAAGAGGAAAGGGAATCGTATAGGAACGCCACTGGATCTCACCTTCAAAGGTTTAGAATTTATCCAATGAGACTAATTGTGTACGGCGTAGTGTACAGTACTGCTTTGTACAAGTGGTGGCAATACGTGACCAACTAA

Coding sequence (CDS)

ATGGCCAACGACGCCGCACTCAACTCCTCTCTCGTAATTTTGGCCCTCGCCGTCCTCCTCGTCGGAATCTCCACCTATTCCTTCAAGAAAATGGCCGTAACTTATTTCGTCGGCGTTTTCGCCATCGCCGGCGTTCTCTTACCCGATTGGTGTTTCTTTGACCGAGATTTCTCCCGGTGGACTTCTCCGGTCACCGAAGAGGAAAGGGAATCGTATAGGAACGCCACTGGATCTCACCTTCAAAGGTTTAGAATTTATCCAATGAGACTAATTGTGTACGGCGTAGTGTACAGTACTGCTTTGTACAAGTGGTGGCAATACGTGACCAACTAA

Protein sequence

MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRWTSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN

Homology

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BLAST of CsGy3G042530 vs. NCBI nr
Match: XP_004136292.1 (PREDICTED: uncharacterized protein LOC101214135 [Cucumis sativus] >KGN60209.1 hypothetical protein Csa_3G889170 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 1.6e-53
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFF RDFSRW
Sbjct: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFGRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 111
           TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN
Sbjct: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 110

[Close]

BLAST of CsGy3G042530 vs. NCBI nr
Match: XP_008466235.1 (PREDICTED: uncharacterized protein LOC103503709 [Cucumis melo])

HSP 1 Score: 209.1 bits (531), Expect = 7.4e-51
Identity = 102/110 (92.73%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLVILALA++LVGI+TYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW
Sbjct: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 111
           TSPVTEEERESYRNATGS LQRFRIYPMR+IVYG+VYS ALYKWWQYVT+
Sbjct: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 110

[Close]

BLAST of CsGy3G042530 vs. NCBI nr
Match: XP_022940831.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 173.7 bits (439), Expect = 3.4e-40
Identity = 85/109 (77.98%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MA DAAL SSLV LA AV+LVGIST+SFKKMAVTY VGVFAIAG+LLPDWCFFDR+FSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVT 110
            SPVTEEERESYR +T S   RFRIYP+RL+VY +VYS ALYKWW++V+
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVS 109

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BLAST of CsGy3G042530 vs. NCBI nr
Match: XP_023524429.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.6 bits (436), Expect = 7.7e-40
Identity = 85/109 (77.98%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MA DAAL SSLV LA  V+LVGIST+SFKKMAVTY VGVFAIAG+LLPDWCFFDRDFSRW
Sbjct: 1   MAEDAALKSSLVFLAAVVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVT 110
            SPVTEEERESYR +T S   RFRIYP+RL VY +VYS ALYKWW++V+
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVS 109

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BLAST of CsGy3G042530 vs. NCBI nr
Match: XP_022981833.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 171.4 bits (433), Expect = 1.7e-39
Identity = 85/109 (77.98%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MA DAAL SSLV LA  V+LVGIST+SFKKMAVTY VGVFAIAG+LLPDWCFFDRDFSRW
Sbjct: 1   MAEDAALKSSLVFLAATVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVT 110
            SPVTEEERESYR +T S   RFRIYP+RL VY  VYS ALYKWW++V+
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYATVYSAALYKWWKFVS 109

[Close]

BLAST of CsGy3G042530 vs. TAIR10
Match: AT1G34640.1 (peptidases)

HSP 1 Score: 123.2 bits (308), Expect = 9.7e-29
Identity = 62/110 (56.36%), Postives = 79/110 (71.82%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           M N+AAL SS+V LA+ +++V + T S KK  VTY VG+  I G+LLPDW FFDR FSRW
Sbjct: 1   MGNEAALRSSMVGLAVVMVVVWLWTQSLKKTVVTYAVGISLIGGILLPDWDFFDRSFSRW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 111
             PVT EER S   A  SH  RFR+YPMR+++YG VY  A+Y+WW +V+N
Sbjct: 61  GYPVTAEER-SAALARKSHPSRFRVYPMRMVLYGTVYGYAVYRWWMFVSN 109

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BLAST of CsGy3G042530 vs. Swiss-Prot
Match: sp|Q7XI45|DTM1_ORYSJ (Signal peptidase complex-like protein DTM1 OS=Oryza sativa subsp. japonica OX=39947 GN=DTM1 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.6e-20
Identity = 50/112 (44.64%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           M  D  L  SLV LA AV++ G+ T S +K A TY  G+ AIAGVLLPDW FFDRD+S+W
Sbjct: 1   MGRDEMLRRSLVALAAAVVVTGVVTASVRKAAATYGFGILAIAGVLLPDWEFFDRDYSQW 60

Query: 61  TSPVTEEERESYRNATGSH--LQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 111
            +P+    R +   A      + +F+ YP+R+ +   +Y   LYKWW YV++
Sbjct: 61  LTPMPASRRTAAEAAADREHDVWKFKPYPLRMAMLTTIYGFGLYKWWMYVSS 112

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BLAST of CsGy3G042530 vs. TrEMBL
Match: tr|A0A0A0LGU6|A0A0A0LGU6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889170 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.1e-53
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFF RDFSRW
Sbjct: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFGRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 111
           TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN
Sbjct: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 110

[Close]

BLAST of CsGy3G042530 vs. TrEMBL
Match: tr|A0A1S3CQR6|A0A1S3CQR6_CUCME (uncharacterized protein LOC103503709 OS=Cucumis melo OX=3656 GN=LOC103503709 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.9e-51
Identity = 102/110 (92.73%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLVILALA++LVGI+TYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW
Sbjct: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 111
           TSPVTEEERESYRNATGS LQRFRIYPMR+IVYG+VYS ALYKWWQYVT+
Sbjct: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 110

[Close]

BLAST of CsGy3G042530 vs. TrEMBL
Match: tr|A0A2I0KZJ9|A0A2I0KZJ9_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_005774 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.8e-29
Identity = 65/109 (59.63%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MA+D AL S+LV LA+ + +VG+ T+SFKKM VTY +G+  I G+LLPDW +FDRDFS+W
Sbjct: 1   MADDTALRSALVWLAVVMAVVGLGTHSFKKMFVTYVLGMLGIVGILLPDWDYFDRDFSKW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVT 110
           T+PVT EER +  +A  S L RFRIYP+RL++Y  VY   LYKWWQYV+
Sbjct: 61  TTPVTGEERAAIASARRSGLSRFRIYPLRLVIYTTVYGFGLYKWWQYVS 109

[Close]

BLAST of CsGy3G042530 vs. TrEMBL
Match: tr|W9RMI1|W9RMI1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003402 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.4e-28
Identity = 69/110 (62.73%), Postives = 82/110 (74.55%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAAL S+LV LA  VL+VGI T+SFKKM  TY VGV  I+GV LPDW +FDRDFSRW
Sbjct: 1   MANDAALRSALVWLAGVVLVVGICTFSFKKMLATYVVGVVGISGVFLPDWGYFDRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 111
           TSPVT EER S+  A  S   RF+IYP+R   Y +VY   LYKWW++V++
Sbjct: 61  TSPVTAEERASH-IAQRSGPTRFKIYPLRFTAYSIVYGYGLYKWWKFVSS 109

[Close]

BLAST of CsGy3G042530 vs. TrEMBL
Match: tr|A0A1U8Q7I9|A0A1U8Q7I9_NELNU (signal peptidase complex-like protein DTM1 isoform X2 OS=Nelumbo nucifera OX=4432 GN=LOC104605991 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.9e-28
Identity = 66/110 (60.00%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           M NDA L SSL+ L + VLL+GI TYSFKKM VTYF G+FAI+GVLLPDW FFDRDFS+W
Sbjct: 1   MMNDAVLRSSLLYLGIIVLLIGIFTYSFKKMMVTYFFGLFAISGVLLPDWEFFDRDFSQW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 111
             PVT E      +   S    F+IYP+RL +Y +VY   LYKWW YV+N
Sbjct: 61  FCPVTIEHGADSSSPQISRSTGFKIYPLRLALYAIVYGFGLYKWWVYVSN 110

The following BLAST results are available for this feature:

BLAST of CsGy3G042530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136292.1	1.6e-53	99.09	PREDICTED: uncharacterized protein LOC101214135 [Cucumis sativus] >KGN60209.1 hy...	[more]
XP_008466235.1	7.4e-51	92.73	PREDICTED: uncharacterized protein LOC103503709 [Cucumis melo]	[more]
XP_022940831.1	3.4e-40	77.98	signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita moschata]	[more]
XP_023524429.1	7.7e-40	77.98	signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita pepo subsp. pep...	[more]
XP_022981833.1	1.7e-39	77.98	signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita maxima]	[more]

BLAST of CsGy3G042530 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G34640.1	9.7e-29	56.36	peptidases	[more]

BLAST of CsGy3G042530 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q7XI45\|DTM1_ORYSJ	4.6e-20	44.64	Signal peptidase complex-like protein DTM1 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of CsGy3G042530 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LGU6\|A0A0A0LGU6_CUCSA	1.1e-53	99.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889170 PE=4 SV=1	[more]
tr\|A0A1S3CQR6\|A0A1S3CQR6_CUCME	4.9e-51	92.73	uncharacterized protein LOC103503709 OS=Cucumis melo OX=3656 GN=LOC103503709 PE=...	[more]
tr\|A0A2I0KZJ9\|A0A2I0KZJ9_PUNGR	1.8e-29	59.63	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_005774 PE=4 SV=1	[more]
tr\|W9RMI1\|W9RMI1_9ROSA	3.4e-28	62.73	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003402 PE=4 SV=1	[more]
tr\|A0A1U8Q7I9\|A0A1U8Q7I9_NELNU	9.9e-28	60.00	signal peptidase complex-like protein DTM1 isoform X2 OS=Nelumbo nucifera OX=443...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008233	peptidase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0005787	signal peptidase complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006465	signal peptide processing

Vocabulary: **INTERPRO**
Term	Definition
IPR009542	SPC12

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006465	signal peptide processing
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005787	signal peptidase complex
molecular_function	GO:0008233	peptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G042530.1	CsGy3G042530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009542	Microsomal signal peptidase 12kDa subunit	PFAM	PF06645	SPC12	coord: 8..63 e-value: 2.6E-7 score: 30.5
None	No IPR available	PANTHER	PTHR38354	FAMILY NOT NAMED	coord: 1..109

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G042530	Cla023009	Watermelon (97103) v1	cgybwmB254
CsGy3G042530	Csa3G889170	Cucumber (Chinese Long) v2	cgybcuB110
CsGy3G042530	MELO3C003576	Melon (DHL92) v3.5.1	cgybmeB185
CsGy3G042530	ClCG11G014080	Watermelon (Charleston Gray)	cgybwcgB183
CsGy3G042530	CSPI03G45050	Wild cucumber (PI 183967)	cgybcpiB111
CsGy3G042530	CmaCh01G016030	Cucurbita maxima (Rimu)	cgybcmaB359
CsGy3G042530	CmoCh01G016500	Cucurbita moschata (Rifu)	cgybcmoB329
CsGy3G042530	Lsi04G022310	Bottle gourd (USVL1VR-Ls)	cgyblsiB175
CsGy3G042530	Cp4.1LG02g04960	Cucurbita pepo (Zucchini)	cgybcpeB388
CsGy3G042530	MELO3C003576.2	Melon (DHL92) v3.6.1	cgybmedB186
CsGy3G042530	CsaV3_3G047480	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G042530	Cla97C11G220060	Watermelon (97103) v2	cgybwmbB182
CsGy3G042530	Bhi09G002058	Wax gourd	cgybwgoB329
CsGy3G042530	Carg25627	Silver-seed gourd	carcgybB0995

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G042530	Wax gourd	cgybwgoB302
CsGy3G042530	Cucurbita maxima (Rimu)	cgybcmaB285
CsGy3G042530	Cucurbita moschata (Rifu)	cgybcmoB258
CsGy3G042530	Cucurbita pepo (Zucchini)	cgybcpeB436
CsGy3G042530	Silver-seed gourd	carcgybB0632