CsGy3G042530.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G042530.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	signal peptidase complex-like protein DTM1
Location	Chr3 : 39595759 .. 39596467 (-)
Sequence length	333

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAACGACGCCGCACTCAACTCCTCTCTCGTAATTTTGGCCCTCGCCGTCCTCCTCGTCGGAATCTCCACCTATTCCTTCAAGAAAATGGCCGTAACTTATTTCGTCGGCGTTTTCGCCATCGCCGGCGTTCTCTTACCCGATTGGTGTTTCTTTGACCGAGATTTCTCCCGGTGGACTTCTCCGGTCACCGAAGAGGAAAGGGAATCGTATAGGAACGCCACTGGATCTCACCTTCAAAGGTCGGTTATATATACCTTTAATTTCTTCTCTTCTCTCCGTGTTACTTTTTTCTTCTTTGATTGATGAAAAATTTGTGCGCAGAATTAGCAAAAACTCGCCCTCCAACTAATTTACTACATAATTATATATATGGTAACGTTTAAGTCTACTGGACTACCAAAGTATTACAAATTTCCTAAGGCTACACCTAAATATTTTTTTATTTAATTTTTAACTGGAAAATTTATAATATATATATTTTCTAATCTGGGTAAAATTTTAACTAAAATTACAAACTATTATAAGACTTCGTTAAAAATTGAAGAGAAAAAAAAAAAATATATATATATATATATTTTTTTTTCTAATCTTTGTTTGTTGGAAATCTTTTTGCAGGTTTAGAATTTATCCAATGAGACTAATTGTGTACGGCGTAGTGTACAGTACTGCTTTGTACAAGTGGTGGCAATACGTGACCAACTAA

mRNA sequence

ATGGCCAACGACGCCGCACTCAACTCCTCTCTCGTAATTTTGGCCCTCGCCGTCCTCCTCGTCGGAATCTCCACCTATTCCTTCAAGAAAATGGCCGTAACTTATTTCGTCGGCGTTTTCGCCATCGCCGGCGTTCTCTTACCCGATTGGTGTTTCTTTGACCGAGATTTCTCCCGGTGGACTTCTCCGGTCACCGAAGAGGAAAGGGAATCGTATAGGAACGCCACTGGATCTCACCTTCAAAGGTTTAGAATTTATCCAATGAGACTAATTGTGTACGGCGTAGTGTACAGTACTGCTTTGTACAAGTGGTGGCAATACGTGACCAACTAA

Coding sequence (CDS)

ATGGCCAACGACGCCGCACTCAACTCCTCTCTCGTAATTTTGGCCCTCGCCGTCCTCCTCGTCGGAATCTCCACCTATTCCTTCAAGAAAATGGCCGTAACTTATTTCGTCGGCGTTTTCGCCATCGCCGGCGTTCTCTTACCCGATTGGTGTTTCTTTGACCGAGATTTCTCCCGGTGGACTTCTCCGGTCACCGAAGAGGAAAGGGAATCGTATAGGAACGCCACTGGATCTCACCTTCAAAGGTTTAGAATTTATCCAATGAGACTAATTGTGTACGGCGTAGTGTACAGTACTGCTTTGTACAAGTGGTGGCAATACGTGACCAACTAA

Protein sequence

MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRWTSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN

Homology

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BLAST of CsGy3G042530.1 vs. NCBI nr
Match: XP_004136292.1 (PREDICTED: uncharacterized protein LOC101214135 [Cucumis sativus] >KGN60209.1 hypothetical protein Csa_3G889170 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 1.6e-53
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFF RDFSRW
Sbjct: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFGRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 111
           TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN
Sbjct: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 110

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BLAST of CsGy3G042530.1 vs. NCBI nr
Match: XP_008466235.1 (PREDICTED: uncharacterized protein LOC103503709 [Cucumis melo])

HSP 1 Score: 209.1 bits (531), Expect = 7.4e-51
Identity = 102/110 (92.73%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLVILALA++LVGI+TYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW
Sbjct: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 111
           TSPVTEEERESYRNATGS LQRFRIYPMR+IVYG+VYS ALYKWWQYVT+
Sbjct: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 110

[Close]

BLAST of CsGy3G042530.1 vs. NCBI nr
Match: XP_022940831.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 173.7 bits (439), Expect = 3.4e-40
Identity = 85/109 (77.98%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MA DAAL SSLV LA AV+LVGIST+SFKKMAVTY VGVFAIAG+LLPDWCFFDR+FSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVT 110
            SPVTEEERESYR +T S   RFRIYP+RL+VY +VYS ALYKWW++V+
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVS 109

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BLAST of CsGy3G042530.1 vs. NCBI nr
Match: XP_023524429.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.6 bits (436), Expect = 7.7e-40
Identity = 85/109 (77.98%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MA DAAL SSLV LA  V+LVGIST+SFKKMAVTY VGVFAIAG+LLPDWCFFDRDFSRW
Sbjct: 1   MAEDAALKSSLVFLAAVVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVT 110
            SPVTEEERESYR +T S   RFRIYP+RL VY +VYS ALYKWW++V+
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVS 109

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BLAST of CsGy3G042530.1 vs. NCBI nr
Match: XP_022981833.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 171.4 bits (433), Expect = 1.7e-39
Identity = 85/109 (77.98%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MA DAAL SSLV LA  V+LVGIST+SFKKMAVTY VGVFAIAG+LLPDWCFFDRDFSRW
Sbjct: 1   MAEDAALKSSLVFLAATVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVT 110
            SPVTEEERESYR +T S   RFRIYP+RL VY  VYS ALYKWW++V+
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYATVYSAALYKWWKFVS 109

[Close]

BLAST of CsGy3G042530.1 vs. TAIR10
Match: AT1G34640.1 (peptidases)

HSP 1 Score: 123.2 bits (308), Expect = 9.7e-29
Identity = 62/110 (56.36%), Postives = 79/110 (71.82%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           M N+AAL SS+V LA+ +++V + T S KK  VTY VG+  I G+LLPDW FFDR FSRW
Sbjct: 1   MGNEAALRSSMVGLAVVMVVVWLWTQSLKKTVVTYAVGISLIGGILLPDWDFFDRSFSRW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 111
             PVT EER S   A  SH  RFR+YPMR+++YG VY  A+Y+WW +V+N
Sbjct: 61  GYPVTAEER-SAALARKSHPSRFRVYPMRMVLYGTVYGYAVYRWWMFVSN 109

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BLAST of CsGy3G042530.1 vs. Swiss-Prot
Match: sp|Q7XI45|DTM1_ORYSJ (Signal peptidase complex-like protein DTM1 OS=Oryza sativa subsp. japonica OX=39947 GN=DTM1 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.6e-20
Identity = 50/112 (44.64%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           M  D  L  SLV LA AV++ G+ T S +K A TY  G+ AIAGVLLPDW FFDRD+S+W
Sbjct: 1   MGRDEMLRRSLVALAAAVVVTGVVTASVRKAAATYGFGILAIAGVLLPDWEFFDRDYSQW 60

Query: 61  TSPVTEEERESYRNATGSH--LQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 111
            +P+    R +   A      + +F+ YP+R+ +   +Y   LYKWW YV++
Sbjct: 61  LTPMPASRRTAAEAAADREHDVWKFKPYPLRMAMLTTIYGFGLYKWWMYVSS 112

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BLAST of CsGy3G042530.1 vs. TrEMBL
Match: tr|A0A0A0LGU6|A0A0A0LGU6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889170 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.1e-53
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFF RDFSRW
Sbjct: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFGRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 111
           TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN
Sbjct: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 110

[Close]

BLAST of CsGy3G042530.1 vs. TrEMBL
Match: tr|A0A1S3CQR6|A0A1S3CQR6_CUCME (uncharacterized protein LOC103503709 OS=Cucumis melo OX=3656 GN=LOC103503709 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.9e-51
Identity = 102/110 (92.73%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAALNSSLVILALA++LVGI+TYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW
Sbjct: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 111
           TSPVTEEERESYRNATGS LQRFRIYPMR+IVYG+VYS ALYKWWQYVT+
Sbjct: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 110

[Close]

BLAST of CsGy3G042530.1 vs. TrEMBL
Match: tr|A0A2I0KZJ9|A0A2I0KZJ9_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_005774 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.8e-29
Identity = 65/109 (59.63%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MA+D AL S+LV LA+ + +VG+ T+SFKKM VTY +G+  I G+LLPDW +FDRDFS+W
Sbjct: 1   MADDTALRSALVWLAVVMAVVGLGTHSFKKMFVTYVLGMLGIVGILLPDWDYFDRDFSKW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVT 110
           T+PVT EER +  +A  S L RFRIYP+RL++Y  VY   LYKWWQYV+
Sbjct: 61  TTPVTGEERAAIASARRSGLSRFRIYPLRLVIYTTVYGFGLYKWWQYVS 109

[Close]

BLAST of CsGy3G042530.1 vs. TrEMBL
Match: tr|W9RMI1|W9RMI1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003402 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.4e-28
Identity = 69/110 (62.73%), Postives = 82/110 (74.55%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           MANDAAL S+LV LA  VL+VGI T+SFKKM  TY VGV  I+GV LPDW +FDRDFSRW
Sbjct: 1   MANDAALRSALVWLAGVVLVVGICTFSFKKMLATYVVGVVGISGVFLPDWGYFDRDFSRW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 111
           TSPVT EER S+  A  S   RF+IYP+R   Y +VY   LYKWW++V++
Sbjct: 61  TSPVTAEERASH-IAQRSGPTRFKIYPLRFTAYSIVYGYGLYKWWKFVSS 109

[Close]

BLAST of CsGy3G042530.1 vs. TrEMBL
Match: tr|A0A1U8Q7I9|A0A1U8Q7I9_NELNU (signal peptidase complex-like protein DTM1 isoform X2 OS=Nelumbo nucifera OX=4432 GN=LOC104605991 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.9e-28
Identity = 66/110 (60.00%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60
           M NDA L SSL+ L + VLL+GI TYSFKKM VTYF G+FAI+GVLLPDW FFDRDFS+W
Sbjct: 1   MMNDAVLRSSLLYLGIIVLLIGIFTYSFKKMMVTYFFGLFAISGVLLPDWEFFDRDFSQW 60

Query: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVTN 111
             PVT E      +   S    F+IYP+RL +Y +VY   LYKWW YV+N
Sbjct: 61  FCPVTIEHGADSSSPQISRSTGFKIYPLRLALYAIVYGFGLYKWWVYVSN 110

The following BLAST results are available for this feature:

BLAST of CsGy3G042530.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136292.1	1.6e-53	99.09	PREDICTED: uncharacterized protein LOC101214135 [Cucumis sativus] >KGN60209.1 hy...	[more]
XP_008466235.1	7.4e-51	92.73	PREDICTED: uncharacterized protein LOC103503709 [Cucumis melo]	[more]
XP_022940831.1	3.4e-40	77.98	signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita moschata]	[more]
XP_023524429.1	7.7e-40	77.98	signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita pepo subsp. pep...	[more]
XP_022981833.1	1.7e-39	77.98	signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita maxima]	[more]

BLAST of CsGy3G042530.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G34640.1	9.7e-29	56.36	peptidases	[more]

BLAST of CsGy3G042530.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q7XI45\|DTM1_ORYSJ	4.6e-20	44.64	Signal peptidase complex-like protein DTM1 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of CsGy3G042530.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LGU6\|A0A0A0LGU6_CUCSA	1.1e-53	99.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889170 PE=4 SV=1	[more]
tr\|A0A1S3CQR6\|A0A1S3CQR6_CUCME	4.9e-51	92.73	uncharacterized protein LOC103503709 OS=Cucumis melo OX=3656 GN=LOC103503709 PE=...	[more]
tr\|A0A2I0KZJ9\|A0A2I0KZJ9_PUNGR	1.8e-29	59.63	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_005774 PE=4 SV=1	[more]
tr\|W9RMI1\|W9RMI1_9ROSA	3.4e-28	62.73	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003402 PE=4 SV=1	[more]
tr\|A0A1U8Q7I9\|A0A1U8Q7I9_NELNU	9.9e-28	60.00	signal peptidase complex-like protein DTM1 isoform X2 OS=Nelumbo nucifera OX=443...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008233	peptidase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0005787	signal peptidase complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006465	signal peptide processing

Vocabulary: **INTERPRO**
Term	Definition
IPR009542	SPC12

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006465	signal peptide processing
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005787	signal peptidase complex
molecular_function	GO:0008233	peptidase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy3G042530	CsGy3G042530	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G042530.1.CDS.2	CsGy3G042530.1.CDS.2	CDS
CsGy3G042530.1.CDS.1	CsGy3G042530.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G042530.1.exon.2	CsGy3G042530.1.exon.2	exon
CsGy3G042530.1.exon.1	CsGy3G042530.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy3G042530.1	CsGy3G042530.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009542	Microsomal signal peptidase 12kDa subunit	PFAM	PF06645	SPC12	coord: 8..63 e-value: 2.6E-7 score: 30.5
None	No IPR available	PANTHER	PTHR38354	FAMILY NOT NAMED	coord: 1..109