Carg25627 (gene) Silver-seed gourd

NameCarg25627
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionSignal peptidase complex-like protein
LocationCucurbita_argyrosperma_scaffold_357 : 34786 .. 35779 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGCAATGGCCGTCGCTTCGAGTATTCTCTCATTTCTTCCTTCGTTTTCATCTCTAGATCCATGGCCGAAGACGCCGCACTTAAATCCTCTTTGGTTTTCTTGGCCGCCGCCGTCGTTCTCGTCGGAATCTCCACGCATTCCTTCAAGAAAATGGCCGTAACTTATCTGGTCGGCGTTTTCGCCATCGCCGGCATCCTCTTGCCAGACTGGTGCTTCTTCGACCGCGATTTCTCTCGGTGGATTTCTCCAGTCACCGAAGAGGAAAGGGAATCGTATCGGATCTCGACTGCATCTCGGAATCCAAGGTCGGTTACTTTTGATTCTTTTTTATCTTCGCGCTCTGTTTCTGTTGTTTGATTGATTCCAGAGCAAAAATTGTGCGAAAAAAATTAGGTTAAGTGATTTTGAAGCCTTTGCCAAATCAATTTCATAATCGTGTTTATTGAAACTTCGTTTGGTTTTTGAAAGTGATTTTTCGAACTCTTCATTTGAAGGCATGAAACTGTTGCAGGTTTAGGATTTATCCAAAATTGTGCGAGAAAGTTAGGTTAAGTGATTTTGCAGTCTTTGCCAAATCAAATTCGTAATCGTGTTTATTGAAACTTCTTTTGGTTTTTGGAAGTGATTTTTCGAACTCTTCATTTGAATGCATGGAAACTGTTGCAGGTTTAGGATTTATCCAAAATTGTGCGAGAAAGTTAGGTTAAGTGATTATGCAGTCTTTGCCAAATCAAATTCGTAATCGTGTTTATGGAAACTTCTTTTGGTTTTTGAAAGTGATTTTTCGAAATTTTCATTAGAATTCTTGGAAACTGTTGCAGGTTTAGGATTTATCCAATCAGACTGGCTGTGTACGCCATAGTTTACAGTGTTGCGCTATACAAGTGGTGGAAATTCGTTTCCACCTAAATCCTCCATCATATCTGTAGTTATTATCTGCTATAGAATTATCTTTTTTTTTTTTGGAAAAAATAAAAATAAATTCCCCCAAA

mRNA sequence

TCTGCAATGGCCGTCGCTTCGAGTATTCTCTCATTTCTTCCTTCGTTTTCATCTCTAGATCCATGGCCGAAGACGCCGCACTTAAATCCTCTTTGGTTTTCTTGGCCGCCGCCGTCGTTCTCGTCGGAATCTCCACGCATTCCTTCAAGAAAATGGCCGTAACTTATCTGGTCGGCGTTTTCGCCATCGCCGGCATCCTCTTGCCAGACTGGTGCTTCTTCGACCGCGATTTCTCTCGGTGGATTTCTCCAGTCACCGAAGAGGAAAGGGAATCGTATCGGATCTCGACTGCATCTCGGAATCCAAGGTTTAGGATTTATCCAATCAGACTGGCTGTGTACGCCATAGTTTACAGTGTTGCGCTATACAAGTGGTGGAAATTCGTTTCCACCTAAATCCTCCATCATATCTGTAGTTATTATCTGCTATAGAATTATCTTTTTTTTTTTTGGAAAAAATAAAAATAAATTCCCCCAAA

Coding sequence (CDS)

ATGGCCGAAGACGCCGCACTTAAATCCTCTTTGGTTTTCTTGGCCGCCGCCGTCGTTCTCGTCGGAATCTCCACGCATTCCTTCAAGAAAATGGCCGTAACTTATCTGGTCGGCGTTTTCGCCATCGCCGGCATCCTCTTGCCAGACTGGTGCTTCTTCGACCGCGATTTCTCTCGGTGGATTTCTCCAGTCACCGAAGAGGAAAGGGAATCGTATCGGATCTCGACTGCATCTCGGAATCCAAGGTTTAGGATTTATCCAATCAGACTGGCTGTGTACGCCATAGTTTACAGTGTTGCGCTATACAAGTGGTGGAAATTCGTTTCCACCTAA

Protein sequence

MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRWISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST
BLAST of Carg25627 vs. NCBI nr
Match: XP_023524429.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.9 bits (546), Expect = 1.3e-52
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60
           MAEDAALKSSLVFLAA VVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW
Sbjct: 1   MAEDAALKSSLVFLAAVVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 111
           ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 110

BLAST of Carg25627 vs. NCBI nr
Match: XP_022940831.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 213.0 bits (541), Expect = 5.1e-52
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60
           MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDR+FSRW
Sbjct: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRNFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 111
           ISPVTEEERESYRISTASRNPRFRIYPIRL VYAIVYSVALYKWWKFVST
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLVVYAIVYSVALYKWWKFVST 110

BLAST of Carg25627 vs. NCBI nr
Match: XP_022981833.1 (signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 211.5 bits (537), Expect = 1.5e-51
Identity = 107/110 (97.27%), Postives = 107/110 (97.27%), Query Frame = 0

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60
           MAEDAALKSSLVFLAA VVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW
Sbjct: 1   MAEDAALKSSLVFLAATVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 111
           ISPVTEEERESYRISTASRNPRFRIYPIRLAVYA VYS ALYKWWKFVST
Sbjct: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYATVYSAALYKWWKFVST 110

BLAST of Carg25627 vs. NCBI nr
Match: XP_022152589.1 (signal peptidase complex-like protein DTM1 [Momordica charantia])

HSP 1 Score: 182.6 bits (462), Expect = 7.4e-43
Identity = 92/110 (83.64%), Postives = 98/110 (89.09%), Query Frame = 0

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60
           MAEDAALKSSLVFLAA VV+VGI+THSF  MAVTYLVGVFAIAG+LLPDWCFFDRDFSRW
Sbjct: 1   MAEDAALKSSLVFLAAVVVVVGIATHSFTNMAVTYLVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 111
            SPVT EERES RIST S+  RFRIYPIRL VY IVYS ALYKWWKF+S+
Sbjct: 61  TSPVTAEERESDRISTGSQLRRFRIYPIRLIVYTIVYSFALYKWWKFISS 110

BLAST of Carg25627 vs. NCBI nr
Match: XP_008466235.1 (PREDICTED: uncharacterized protein LOC103503709 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 9.0e-41
Identity = 85/110 (77.27%), Postives = 98/110 (89.09%), Query Frame = 0

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60
           MA DAAL SSLV LA A+VLVGI+T+SFKKMAVTY VGVFAIAG+LLPDWCFFDRDFSRW
Sbjct: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 111
            SPVTEEERESYR +T S+  RFRIYP+R+ VY IVYS+ALYKWW++V++
Sbjct: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 110

BLAST of Carg25627 vs. TAIR10
Match: AT1G34640.1 (peptidases)

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-26
Identity = 60/109 (55.05%), Postives = 75/109 (68.81%), Query Frame = 0

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60
           M  +AAL+SS+V LA  +V+V + T S KK  VTY VG+  I GILLPDW FFDR FSRW
Sbjct: 1   MGNEAALRSSMVGLAVVMVVVWLWTQSLKKTVVTYAVGISLIGGILLPDWDFFDRSFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVS 110
             PVT EER S  ++  S   RFR+YP+R+ +Y  VY  A+Y+WW FVS
Sbjct: 61  GYPVTAEER-SAALARKSHPSRFRVYPMRMVLYGTVYGYAVYRWWMFVS 108

BLAST of Carg25627 vs. Swiss-Prot
Match: sp|Q7XI45|DTM1_ORYSJ (Signal peptidase complex-like protein DTM1 OS=Oryza sativa subsp. japonica OX=39947 GN=DTM1 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-21
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 0

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60
           M  D  L+ SLV LAAAVV+ G+ T S +K A TY  G+ AIAG+LLPDW FFDRD+S+W
Sbjct: 1   MGRDEMLRRSLVALAAAVVVTGVVTASVRKAAATYGFGILAIAGVLLPDWEFFDRDYSQW 60

Query: 61  ISPVTEEERESYRISTASRNP--RFRIYPIRLAVYAIVYSVALYKWWKFVST 111
           ++P+    R +   +    +   +F+ YP+R+A+   +Y   LYKWW +VS+
Sbjct: 61  LTPMPASRRTAAEAAADREHDVWKFKPYPLRMAMLTTIYGFGLYKWWMYVSS 112

BLAST of Carg25627 vs. TrEMBL
Match: tr|A0A1S3CQR6|A0A1S3CQR6_CUCME (uncharacterized protein LOC103503709 OS=Cucumis melo OX=3656 GN=LOC103503709 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.0e-41
Identity = 85/110 (77.27%), Postives = 98/110 (89.09%), Query Frame = 0

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60
           MA DAAL SSLV LA A+VLVGI+T+SFKKMAVTY VGVFAIAG+LLPDWCFFDRDFSRW
Sbjct: 1   MANDAALNSSLVILALAIVLVGITTYSFKKMAVTYFVGVFAIAGVLLPDWCFFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 111
            SPVTEEERESYR +T S+  RFRIYP+R+ VY IVYS+ALYKWW++V++
Sbjct: 61  TSPVTEEERESYRNATGSQLQRFRIYPMRVIVYGIVYSIALYKWWQYVTS 110

BLAST of Carg25627 vs. TrEMBL
Match: tr|A0A0A0LGU6|A0A0A0LGU6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889170 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.6e-40
Identity = 85/109 (77.98%), Postives = 94/109 (86.24%), Query Frame = 0

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60
           MA DAAL SSLV LA AV+LVGIST+SFKKMAVTY VGVFAIAG+LLPDWCFF RDFSRW
Sbjct: 1   MANDAALNSSLVILALAVLLVGISTYSFKKMAVTYFVGVFAIAGVLLPDWCFFGRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVS 110
            SPVTEEERESYR +T S   RFRIYP+RL VY +VYS ALYKWW++V+
Sbjct: 61  TSPVTEEERESYRNATGSHLQRFRIYPMRLIVYGVVYSTALYKWWQYVT 109

BLAST of Carg25627 vs. TrEMBL
Match: tr|W9RMI1|W9RMI1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003402 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.1e-29
Identity = 69/110 (62.73%), Postives = 84/110 (76.36%), Query Frame = 0

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60
           MA DAAL+S+LV+LA  V++VGI T SFKKM  TY+VGV  I+G+ LPDW +FDRDFSRW
Sbjct: 1   MANDAALRSALVWLAGVVLVVGICTFSFKKMLATYVVGVVGISGVFLPDWGYFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 111
            SPVT EER S+ I+  S   RF+IYP+R   Y+IVY   LYKWWKFVS+
Sbjct: 61  TSPVTAEERASH-IAQRSGPTRFKIYPLRFTAYSIVYGYGLYKWWKFVSS 109

BLAST of Carg25627 vs. TrEMBL
Match: tr|A0A2P5CKJ5|A0A2P5CKJ5_PARAD (Microsomal signal peptidase 12kDa subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_144620 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 9.0e-29
Identity = 69/110 (62.73%), Postives = 84/110 (76.36%), Query Frame = 0

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60
           MA DAAL+S+LV+LAA V +VG+ T SFKKMA TY+VGV  IAG+L PDW +FDRDFSRW
Sbjct: 1   MANDAALRSALVWLAAVVCVVGLCTLSFKKMAATYVVGVVGIAGVLCPDWAYFDRDFSRW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVST 111
             PVT EER S+ I+  S  PR RIYP+R+  Y+I+Y   LYKWW FVS+
Sbjct: 61  THPVTAEERASH-IAQRS-GPRVRIYPMRVIAYSIIYGFGLYKWWMFVSS 108

BLAST of Carg25627 vs. TrEMBL
Match: tr|A0A2I0KZJ9|A0A2I0KZJ9_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_005774 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 63/109 (57.80%), Postives = 82/109 (75.23%), Query Frame = 0

Query: 1   MAEDAALKSSLVFLAAAVVLVGISTHSFKKMAVTYLVGVFAIAGILLPDWCFFDRDFSRW 60
           MA+D AL+S+LV+LA  + +VG+ THSFKKM VTY++G+  I GILLPDW +FDRDFS+W
Sbjct: 1   MADDTALRSALVWLAVVMAVVGLGTHSFKKMFVTYVLGMLGIVGILLPDWDYFDRDFSKW 60

Query: 61  ISPVTEEERESYRISTASRNPRFRIYPIRLAVYAIVYSVALYKWWKFVS 110
            +PVT EER +   +  S   RFRIYP+RL +Y  VY   LYKWW++VS
Sbjct: 61  TTPVTGEERAAIASARRSGLSRFRIYPLRLVIYTTVYGFGLYKWWQYVS 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023524429.11.3e-5299.09signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita pepo subsp. pep... [more]
XP_022940831.15.1e-5298.18signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita moschata][more]
XP_022981833.11.5e-5197.27signal peptidase complex-like protein DTM1 isoform X1 [Cucurbita maxima][more]
XP_022152589.17.4e-4383.64signal peptidase complex-like protein DTM1 [Momordica charantia][more]
XP_008466235.19.0e-4177.27PREDICTED: uncharacterized protein LOC103503709 [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT1G34640.11.2e-2655.05peptidases[more]
Match NameE-valueIdentityDescription
sp|Q7XI45|DTM1_ORYSJ1.1e-2145.54Signal peptidase complex-like protein DTM1 OS=Oryza sativa subsp. japonica OX=39... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3CQR6|A0A1S3CQR6_CUCME6.0e-4177.27uncharacterized protein LOC103503709 OS=Cucumis melo OX=3656 GN=LOC103503709 PE=... [more]
tr|A0A0A0LGU6|A0A0A0LGU6_CUCSA6.6e-4077.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889170 PE=4 SV=1[more]
tr|W9RMI1|W9RMI1_9ROSA1.1e-2962.73Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003402 PE=4 SV=1[more]
tr|A0A2P5CKJ5|A0A2P5CKJ5_PARAD9.0e-2962.73Microsomal signal peptidase 12kDa subunit OS=Parasponia andersonii OX=3476 GN=Pa... [more]
tr|A0A2I0KZJ9|A0A2I0KZJ9_PUNGR1.2e-2857.80Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_005774 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005787signal peptidase complex
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006465signal peptide processing
Vocabulary: Molecular Function
TermDefinition
GO:0008233peptidase activity
Vocabulary: INTERPRO
TermDefinition
IPR009542SPC12
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006465 signal peptide processing
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005787 signal peptidase complex
molecular_function GO:0008233 peptidase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25627-RACarg25627-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009542Microsomal signal peptidase 12kDa subunitPFAMPF06645SPC12coord: 9..63
e-value: 2.8E-7
score: 30.4
NoneNo IPR availablePANTHERPTHR38354FAMILY NOT NAMEDcoord: 1..110