CsGy3G018870 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G018870
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionnigrin b-like
LocationChr3 : 15007888 .. 15008697 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTGCCCTCCGACTATGGATATCAAGTCGTCCCTGGAGCCACACATCTTGTGGGTCGAGATGGATTGTGTTTGGAGATGTCTCCATGGTTTTACAAAGGTAGTAATTTTCCAACTCGATTATCACCCTGCAACGAACAAAAGAAACAAACTCAGTTATGGACTGTTCTCCAAGATGAAACGATTCGACCAATGAATGATAGATATTGCTTGGTTTCTTACGTCTCTGTTAACTTCATAACCAATGTGGTAGTAAGCGAGTGTGCTAAAGAGCCACATTCTAATAAGAAATGGATCCATAAGGAGGACAGAACCATAGTCCATGTTGGGTCAGGAATGGTTCTAACAGGAAATTCAAACTATGTGACAGTACAAAGGAACAAAAATGCACCATCACAAAGCTGGGAAGCAACAAAAAGTTTAACCCCAATGGTTGCAAACATAAAATGGCTTGAAAACTTGTGTTTGCAATCGACGAAAGATTCGAATTATGTACAGTTGGATGGATGTAATAGTGAAAATAAGAGCCAACATTGGTCATTGTATGGAGATGGAACCATTAGAAAACATGTGAATAGAAACTATTGCTTGACTTCTGAACAAGATTTTGGTCGTTTTGTAGCTGTGTCTAAATGTGAAGACAAACCACAACAACGTTGGGGTCTTGGTGCTGAAGACAATACAATTAACCATCCCAATACTGACATGGTCATGGATGTGCTTAGTGTGCCTTTTGATGATCTTCCATTAGCGGTCGTTACAAACCACCGTGATGGAACTGCTACCCAACGATGGATTATTTACTAA

mRNA sequence

ATGGCAGTGCCCTCCGACTATGGATATCAAGTCGTCCCTGGAGCCACACATCTTGTGGGTCGAGATGGATTGTGTTTGGAGATGTCTCCATGGTTTTACAAAGGTAGTAATTTTCCAACTCGATTATCACCCTGCAACGAACAAAAGAAACAAACTCAGTTATGGACTGTTCTCCAAGATGAAACGATTCGACCAATGAATGATAGATATTGCTTGGTTTCTTACGTCTCTGTTAACTTCATAACCAATGTGGTAGTAAGCGAGTGTGCTAAAGAGCCACATTCTAATAAGAAATGGATCCATAAGGAGGACAGAACCATAGTCCATGTTGGGTCAGGAATGGTTCTAACAGGAAATTCAAACTATGTGACAGTACAAAGGAACAAAAATGCACCATCACAAAGCTGGGAAGCAACAAAAAGTTTAACCCCAATGGTTGCAAACATAAAATGGCTTGAAAACTTGTGTTTGCAATCGACGAAAGATTCGAATTATGTACAGTTGGATGGATGTAATAGTGAAAATAAGAGCCAACATTGGTCATTGTATGGAGATGGAACCATTAGAAAACATGTGAATAGAAACTATTGCTTGACTTCTGAACAAGATTTTGGTCGTTTTGTAGCTGTGTCTAAATGTGAAGACAAACCACAACAACGTTGGGGTCTTGGTGCTGAAGACAATACAATTAACCATCCCAATACTGACATGGTCATGGATGTGCTTAGTGTGCCTTTTGATGATCTTCCATTAGCGGTCGTTACAAACCACCGTGATGGAACTGCTACCCAACGATGGATTATTTACTAA

Coding sequence (CDS)

ATGGCAGTGCCCTCCGACTATGGATATCAAGTCGTCCCTGGAGCCACACATCTTGTGGGTCGAGATGGATTGTGTTTGGAGATGTCTCCATGGTTTTACAAAGGTAGTAATTTTCCAACTCGATTATCACCCTGCAACGAACAAAAGAAACAAACTCAGTTATGGACTGTTCTCCAAGATGAAACGATTCGACCAATGAATGATAGATATTGCTTGGTTTCTTACGTCTCTGTTAACTTCATAACCAATGTGGTAGTAAGCGAGTGTGCTAAAGAGCCACATTCTAATAAGAAATGGATCCATAAGGAGGACAGAACCATAGTCCATGTTGGGTCAGGAATGGTTCTAACAGGAAATTCAAACTATGTGACAGTACAAAGGAACAAAAATGCACCATCACAAAGCTGGGAAGCAACAAAAAGTTTAACCCCAATGGTTGCAAACATAAAATGGCTTGAAAACTTGTGTTTGCAATCGACGAAAGATTCGAATTATGTACAGTTGGATGGATGTAATAGTGAAAATAAGAGCCAACATTGGTCATTGTATGGAGATGGAACCATTAGAAAACATGTGAATAGAAACTATTGCTTGACTTCTGAACAAGATTTTGGTCGTTTTGTAGCTGTGTCTAAATGTGAAGACAAACCACAACAACGTTGGGGTCTTGGTGCTGAAGACAATACAATTAACCATCCCAATACTGACATGGTCATGGATGTGCTTAGTGTGCCTTTTGATGATCTTCCATTAGCGGTCGTTACAAACCACCGTGATGGAACTGCTACCCAACGATGGATTATTTACTAA

Protein sequence

MAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGTATQRWIIY
Homology
[Close]
BLAST of CsGy3G018870 vs. NCBI nr
Match: XP_004146289.1 (PREDICTED: nigrin b-like [Cucumis sativus] >KGN57583.1 hypothetical protein Csa_3G219180 [Cucumis sativus])

HSP 1 Score: 575.9 bits (1483), Expect = 7.3e-161
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0 

Query: 1   MAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQD 60
           MAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQD
Sbjct: 20  MAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQD 79

Query: 61  ETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVLTGNS 120
           ETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVLTGNS
Sbjct: 80  ETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVLTGNS 139

Query: 121 NYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHW 180
           NYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHW
Sbjct: 140 NYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHW 199

Query: 181 SLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNTDMVMD 240
           SLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNTDMVMD
Sbjct: 200 SLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNTDMVMD 259

Query: 241 VLSVPFDDLPLAVVTNHRDGTATQRWIIY 270
           VLSVPFDDLPLAVVTNHRDGTATQRWIIY
Sbjct: 260 VLSVPFDDLPLAVVTNHRDGTATQRWIIY 288

[Close]
BLAST of CsGy3G018870 vs. NCBI nr
Match: XP_016901886.1 (PREDICTED: nigrin b-like [Cucumis melo])

HSP 1 Score: 427.6 bits (1098), Expect = 3.2e-116
Identity = 197/272 (72.43%), Postives = 230/272 (84.56%), Query Frame = 0 

Query: 1   MAVPSDYG----YQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWT 60
           MAVPS+YG    Y  VP ATHLVGRDGLCLEMSPWFY+G+NFPTRLSPC+E KKQTQLWT
Sbjct: 20  MAVPSNYGYGGEYGGVPRATHLVGRDGLCLEMSPWFYRGNNFPTRLSPCDEHKKQTQLWT 79

Query: 61  VLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVL 120
           V+ D TIRPMND++CLV+ V V  I   VV ECAKEP+SNK+W HK+D TI HV SGMVL
Sbjct: 80  VVGDGTIRPMNDKFCLVADVLVGLINKAVVRECAKEPNSNKRWTHKKDGTITHVESGMVL 139

Query: 121 TGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENK 180
           TG+S+YVT+Q NKN PSQSWEAT+S TPM+ANI+WL NLCLQST DSN+V L+GCN ENK
Sbjct: 140 TGDSDYVTLQSNKNTPSQSWEATESSTPMIANIEWLNNLCLQSTDDSNHVGLNGCNRENK 199

Query: 181 SQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNTD 240
            Q W+LYGDGTIR++VNRNYCLTS++  GRF+ +SKCEDKPQQRW LGA+D+TI+HPN+D
Sbjct: 200 DQRWALYGDGTIRQNVNRNYCLTSDEYLGRFIVMSKCEDKPQQRWNLGAKDSTIDHPNSD 259

Query: 241 MVMDVLSVPFDDLPLAVVTNHRDGTATQRWII 269
           MVMDVL VP+ D   AVVTN RDG+A+QRW I
Sbjct: 260 MVMDVLFVPYYDFSSAVVTNRRDGSASQRWTI 291

[Close]
BLAST of CsGy3G018870 vs. NCBI nr
Match: KGN57579.1 (hypothetical protein Csa_3G217160 [Cucumis sativus])

HSP 1 Score: 381.7 bits (979), Expect = 2.0e-102
Identity = 183/273 (67.03%), Postives = 212/273 (77.66%), Query Frame = 0 

Query: 1   MAVPSDYGYQV----VPGATHLVGRDGLCLEMSPWFY-KGSNFPTRLSPCNEQKKQTQLW 60
           +AVP +YGY V    VPGATHLVGRDGLCLEMSPW+   G NFPTRLSPC+E KKQTQLW
Sbjct: 20  IAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGINFPTRLSPCDE-KKQTQLW 79

Query: 61  TVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMV 120
           T++ D TIRPMND++CL + V    I   VVSEC K    NKKW  K D TI  V S MV
Sbjct: 80  TIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPNKKWTQKNDGTIALVDSRMV 139

Query: 121 LTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSEN 180
           LTG+ +YVT+Q NK  PSQSWE T+SL  MVANI+WL NLCLQST DS++V L+GCN++N
Sbjct: 140 LTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLCLQSTDDSSHVGLNGCNTDN 199

Query: 181 KSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNT 240
           K Q W+LY DGTIR+HVN+NYCLTS+QDFGRFV VSKCEDKPQQRW L A+D TI+HPNT
Sbjct: 200 KYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDKPQQRWSLDAKDYTIDHPNT 259

Query: 241 DMVMDVLSVPFDDLPLAVVTNHRDGTATQRWII 269
           DMV+DV SVP    P  +VTN RDG+A+QRW I
Sbjct: 260 DMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTI 291

[Close]
BLAST of CsGy3G018870 vs. NCBI nr
Match: NP_001274403.1 (uncharacterized protein LOC101221335 precursor [Cucumis sativus] >BAA88294.1 XSP30 [Cucumis sativus])

HSP 1 Score: 381.7 bits (979), Expect = 2.0e-102
Identity = 183/273 (67.03%), Postives = 212/273 (77.66%), Query Frame = 0 

Query: 1   MAVPSDYGYQV----VPGATHLVGRDGLCLEMSPWFY-KGSNFPTRLSPCNEQKKQTQLW 60
           +AVP +YGY V    VPGATHLVGRDGLCLEMSPW+   G NFPTRLSPC+E KKQTQLW
Sbjct: 20  IAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGINFPTRLSPCDE-KKQTQLW 79

Query: 61  TVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMV 120
           T++ D TIRPMND++CL + V    I   VVSEC K    NKKW  K D TI  V S MV
Sbjct: 80  TIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPNKKWTQKNDGTIALVDSRMV 139

Query: 121 LTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSEN 180
           LTG+ +YVT+Q NK  PSQSWE T+SL  MVANI+WL NLCLQST DS++V L+GCN++N
Sbjct: 140 LTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLCLQSTDDSSHVGLNGCNTDN 199

Query: 181 KSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNT 240
           K Q W+LY DGTIR+HVN+NYCLTS+QDFGRFV VSKCEDKPQQRW L A+D TI+HPNT
Sbjct: 200 KYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDKPQQRWSLDAKDYTIDHPNT 259

Query: 241 DMVMDVLSVPFDDLPLAVVTNHRDGTATQRWII 269
           DMV+DV SVP    P  +VTN RDG+A+QRW I
Sbjct: 260 DMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTI 291

[Close]
BLAST of CsGy3G018870 vs. NCBI nr
Match: XP_008456219.1 (PREDICTED: nigrin b-like [Cucumis melo])

HSP 1 Score: 374.4 bits (960), Expect = 3.2e-100
Identity = 177/214 (82.71%), Postives = 191/214 (89.25%), Query Frame = 0 

Query: 15  ATHLVGRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVS 74
           ATHLVGRDG CLEMS WFYKG+  PTRLSPC++ KKQTQ  TVLQD TIRPMNDRYCLV 
Sbjct: 33  ATHLVGRDGFCLEMSSWFYKGNYIPTRLSPCDKHKKQTQFRTVLQDGTIRPMNDRYCLVL 92

Query: 75  YVSVN-FITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPS 134
           YV VN FITNVVVSECAKEP+SNKKW HKED TIVH+GS MV+TGN +YVT+QRNKNAPS
Sbjct: 93  YVLVNKFITNVVVSECAKEPNSNKKWTHKEDGTIVHIGSEMVITGNLDYVTLQRNKNAPS 152

Query: 135 QSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRKHVN 194
           QSW+AT+SLTPMV NIKWLENLCLQST+DSNYV LDGCNSENKSQ W+LY DGTIRKHVN
Sbjct: 153 QSWKATESLTPMVVNIKWLENLCLQSTEDSNYVGLDGCNSENKSQRWALYSDGTIRKHVN 212

Query: 195 RNYCLTSEQDFGRFVAVSKCEDKPQQRWGLGAED 228
           RNYCLTSE+  GRFV VSKCEDKPQQRW LGA+D
Sbjct: 213 RNYCLTSEKYSGRFVIVSKCEDKPQQRWDLGAKD 246

[Close]
BLAST of CsGy3G018870 vs. Swiss-Prot
Match: sp|P33183|NIGB_SAMNI (Nigrin b OS=Sambucus nigra OX=4202 PE=1 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 2.7e-29
Identity = 81/258 (31.40%), Postives = 135/258 (52.33%), Query Frame = 0 

Query: 17  HLVGRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYV 76
           ++VGRDGLC+++    Y     P +L PC  Q+ Q   WT   D+TIR M    C+ +  
Sbjct: 311 NIVGRDGLCVDVRNG-YDTDGTPLQLWPCGTQRNQR--WTFDSDDTIRSMGK--CMTAN- 370

Query: 77  SVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVLT----GNSNYVTVQRNKNAP 136
            +N  +N+V+  C+    +  KW    D +I++  SG+V+T     +   + ++ N  A 
Sbjct: 371 GLNNGSNIVIFNCSTAAENAIKWEVPIDGSIINPSSGLVMTAPRAASRTILLLEDNIYAA 430

Query: 137 SQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRKHV 196
           SQ W  T ++ P+VA+I   + +CLQS  ++N V ++ C + +  Q W+LYGD TIR + 
Sbjct: 431 SQGWTVTNNVKPIVASIVGYKEMCLQSNGENNGVWMEDCEATSLQQQWALYGDRTIRVNS 490

Query: 197 NRNYCLTSE-QDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNTDMVMDV--LSVPFDDL 256
            R  C+T+   +    + + KC+  P QRW   + D  I +P +  VMDV   +V   ++
Sbjct: 491 TRGLCVTTNGYNSKDLIIILKCQGLPSQRWFFNS-DGAIVNPKSRHVMDVRASNVSLREI 550

Query: 257 PLAVVTNHRDGTATQRWI 268
            +   T    G   Q+W+
Sbjct: 551 IIFPAT----GNPNQQWV 557

[Close]
BLAST of CsGy3G018870 vs. Swiss-Prot
Match: sp|Q41358|SNAIB_SAMNI (Ribosome-inactivating protein SNAI OS=Sambucus nigra OX=4202 GN=SNA-I PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.7e-29
Identity = 85/263 (32.32%), Postives = 131/263 (49.81%), Query Frame = 0 

Query: 11  VVPGATHLVGRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRY 70
           VV     + G DGLC+++    Y   N P +L PC  +    QLWT   D TIR +    
Sbjct: 318 VVEVTRRISGWDGLCVDVRYGHYIDGN-PVQLRPCGNE--CNQLWTFRTDGTIRWLGK-- 377

Query: 71  CLVSYVSVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVLT----GNSNYVTVQ 130
           CL +       ++V++ +C   P    KW+   D TI +  SG+VLT         ++++
Sbjct: 378 CLTA------SSSVMIYDCNTVPPEATKWVVSIDGTITNPHSGLVLTAPQAAEGTALSLE 437

Query: 131 RNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHWSLYGDG 190
            N +A  Q W     + P+V  I   + +CL+   ++N+V L+ C      Q W+LYGDG
Sbjct: 438 NNIHAARQGW-TVGDVEPLVTFIVGYKQMCLRENGENNFVWLEDCVLNRVQQEWALYGDG 497

Query: 191 TIRKHVNRNYCLTSE-QDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNTDMVMDVLSVP 250
           TIR + NR+ C+TSE  +    + + KCE    QRW     + TI++PN  ++MDV    
Sbjct: 498 TIRVNSNRSLCVTSEDHEPSDLIVILKCEGSGNQRWVFNT-NGTISNPNAKLLMDVAQ-- 557

Query: 251 FDDLPLAVVTNHR-DGTATQRWI 268
             D+ L  +  +R  G   Q+WI
Sbjct: 558 -RDVSLRKIILYRPTGNPNQQWI 564

[Close]
BLAST of CsGy3G018870 vs. Swiss-Prot
Match: sp|O22415|SNAIF_SAMNI (Ribosome-inactivating protein SNAIf OS=Sambucus nigra OX=4202 GN=SNA-If PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.9e-28
Identity = 83/263 (31.56%), Postives = 128/263 (48.67%), Query Frame = 0 

Query: 11  VVPGATHLVGRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRY 70
           VV     + G DGLC+++    Y   N   +L PC  +    QLWT   D TIR +    
Sbjct: 318 VVEVTRRISGWDGLCVDVRDGHYIDGN-TVQLGPCGNE--CNQLWTFRTDGTIRWLGK-- 377

Query: 71  CLVSYVSVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVLT----GNSNYVTVQ 130
           CL +       ++V++ +C   P    KW+   D TI +  SG+VLT         ++++
Sbjct: 378 CLTT------SSSVMIYDCNTVPPEATKWVVSTDGTITNPRSGLVLTAPQAAEGTALSLE 437

Query: 131 RNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHWSLYGDG 190
            N +A  Q W     + P+V  I   + +CL    ++N+V L+ C      Q W+LYGDG
Sbjct: 438 NNIHAARQGW-TVGDVEPLVTFIVGYKQMCLTENGENNFVWLEDCVLNRVEQEWALYGDG 497

Query: 191 TIRKHVNRNYCLTSE-QDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNTDMVMDVLSVP 250
           TIR + NR+ C+TSE  +    + + KCE    QRW     + TI++PN  +VMDV    
Sbjct: 498 TIRVNSNRSLCVTSEDHEPSDLIVILKCEGSGNQRWVFNT-NGTISNPNAKLVMDVAQ-- 557

Query: 251 FDDLPL-AVVTNHRDGTATQRWI 268
             ++ L  ++     G   Q+WI
Sbjct: 558 -SNVSLRKIILYPPTGNPNQQWI 564

[Close]
BLAST of CsGy3G018870 vs. Swiss-Prot
Match: sp|P06750|AGGL_RICCO (Agglutinin OS=Ricinus communis OX=3988 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-26
Identity = 84/231 (36.36%), Postives = 123/231 (53.25%), Query Frame = 0 

Query: 18  LVGRDGLCLEMS-PWFYKGSNFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYV 77
           +VGR+GLC++++   F+ G+  P +L PC       QLWT+ +D TIR  N +   +S  
Sbjct: 315 IVGRNGLCVDVTGEEFFDGN--PIQLWPCKSNTDWNQLWTLRKDSTIR-SNGKCLTISKS 374

Query: 78  SVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVL---TGNS-NYVTVQRNKNAP 137
           S      VV+  C+       +W   ++RTI++  SG+VL   +GNS   +TVQ N  A 
Sbjct: 375 SPR--QQVVIYNCSTATVGATRWQIWDNRTIINPRSGLVLAATSGNSGTKLTVQTNIYAV 434

Query: 138 SQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRKHV 197
           SQ W  T +  P V  I  L  +CLQ+  +S  V L+ C SE   Q W+LY DG+IR   
Sbjct: 435 SQGWLPTNNTQPFVTTIVGLYGMCLQA--NSGKVWLEDCTSEKAEQQWALYADGSIRPQQ 494

Query: 198 NRNYCLTSEQDF-GRFVAVSKCEDKPQ-QRWGLGAEDNTINHPNTDMVMDV 242
           NR+ CLT++ +  G  V +  C      QRW +   D TI +    +V+DV
Sbjct: 495 NRDNCLTTDANIKGTVVKILSCGPASSGQRW-MFKNDGTILNLYNGLVLDV 537

[Close]
BLAST of CsGy3G018870 vs. Swiss-Prot
Match: sp|Q9M6E9|AGGL_ABRPR (Agglutinin-1 OS=Abrus precatorius OX=3816 GN=AAG PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.8e-25
Identity = 81/253 (32.02%), Postives = 121/253 (47.83%), Query Frame = 0 

Query: 20  GRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVN 79
           GRDGLC+++S   Y   N P  L  C +Q +  QLWT+  D+TIR          Y   N
Sbjct: 300 GRDGLCVDVSDNAYNNGN-PIILWKCKDQLEVNQLWTLKSDKTIRSKGKCLTTYGYAPGN 359

Query: 80  FITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVLTGNSN----YVTVQRNKNAPSQS 139
           +   V++ +C+        W   ++ TI++  SG+VL+  S+     +TVQ+N     Q 
Sbjct: 360 Y---VMIYDCSSAVAEATYWDIWDNGTIINPKSGLVLSAESSSMGGTLTVQKNDYRMRQG 419

Query: 140 WEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRN 199
           W      +P V +I     LC+++    N + LD C+   + Q W++Y DG+IR   N N
Sbjct: 420 WRTGNDTSPFVTSIAGFFKLCMEA--HGNSMWLDVCDITKEEQQWAVYPDGSIRPVQNTN 479

Query: 200 YCLTSEQ-DFGRFVAVSKCEDK-PQQRWGLGAEDNTINHPNTDMVMDVLSVPFDDLPLAV 259
            CLT E+   G  + +  C +    QRW +   D TI +   DMVMDV S   D     +
Sbjct: 480 NCLTCEEHKQGATIVMMGCSNAWASQRW-VFKSDGTIYNLYDDMVMDVKS--SDPSLKQI 539

Query: 260 VTNHRDGTATQRW 267
           +     G A Q W
Sbjct: 540 ILWPYTGNANQMW 543

[Close]
BLAST of CsGy3G018870 vs. TrEMBL
Match: tr|A0A0A0L756|A0A0A0L756_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G219180 PE=4 SV=1)

HSP 1 Score: 575.9 bits (1483), Expect = 4.9e-161
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0 

Query: 1   MAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQD 60
           MAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQD
Sbjct: 20  MAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQD 79

Query: 61  ETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVLTGNS 120
           ETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVLTGNS
Sbjct: 80  ETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVLTGNS 139

Query: 121 NYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHW 180
           NYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHW
Sbjct: 140 NYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHW 199

Query: 181 SLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNTDMVMD 240
           SLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNTDMVMD
Sbjct: 200 SLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNTDMVMD 259

Query: 241 VLSVPFDDLPLAVVTNHRDGTATQRWIIY 270
           VLSVPFDDLPLAVVTNHRDGTATQRWIIY
Sbjct: 260 VLSVPFDDLPLAVVTNHRDGTATQRWIIY 288

[Close]
BLAST of CsGy3G018870 vs. TrEMBL
Match: tr|A0A1S4E0X9|A0A1S4E0X9_CUCME (nigrin b-like OS=Cucumis melo OX=3656 GN=LOC103496121 PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 2.1e-116
Identity = 197/272 (72.43%), Postives = 230/272 (84.56%), Query Frame = 0 

Query: 1   MAVPSDYG----YQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWT 60
           MAVPS+YG    Y  VP ATHLVGRDGLCLEMSPWFY+G+NFPTRLSPC+E KKQTQLWT
Sbjct: 20  MAVPSNYGYGGEYGGVPRATHLVGRDGLCLEMSPWFYRGNNFPTRLSPCDEHKKQTQLWT 79

Query: 61  VLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVL 120
           V+ D TIRPMND++CLV+ V V  I   VV ECAKEP+SNK+W HK+D TI HV SGMVL
Sbjct: 80  VVGDGTIRPMNDKFCLVADVLVGLINKAVVRECAKEPNSNKRWTHKKDGTITHVESGMVL 139

Query: 121 TGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENK 180
           TG+S+YVT+Q NKN PSQSWEAT+S TPM+ANI+WL NLCLQST DSN+V L+GCN ENK
Sbjct: 140 TGDSDYVTLQSNKNTPSQSWEATESSTPMIANIEWLNNLCLQSTDDSNHVGLNGCNRENK 199

Query: 181 SQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNTD 240
            Q W+LYGDGTIR++VNRNYCLTS++  GRF+ +SKCEDKPQQRW LGA+D+TI+HPN+D
Sbjct: 200 DQRWALYGDGTIRQNVNRNYCLTSDEYLGRFIVMSKCEDKPQQRWNLGAKDSTIDHPNSD 259

Query: 241 MVMDVLSVPFDDLPLAVVTNHRDGTATQRWII 269
           MVMDVL VP+ D   AVVTN RDG+A+QRW I
Sbjct: 260 MVMDVLFVPYYDFSSAVVTNRRDGSASQRWTI 291

[Close]
BLAST of CsGy3G018870 vs. TrEMBL
Match: tr|A0A0A0L9D1|A0A0A0L9D1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G217160 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.3e-102
Identity = 183/273 (67.03%), Postives = 212/273 (77.66%), Query Frame = 0 

Query: 1   MAVPSDYGYQV----VPGATHLVGRDGLCLEMSPWFY-KGSNFPTRLSPCNEQKKQTQLW 60
           +AVP +YGY V    VPGATHLVGRDGLCLEMSPW+   G NFPTRLSPC+E KKQTQLW
Sbjct: 20  IAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGINFPTRLSPCDE-KKQTQLW 79

Query: 61  TVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMV 120
           T++ D TIRPMND++CL + V    I   VVSEC K    NKKW  K D TI  V S MV
Sbjct: 80  TIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPNKKWTQKNDGTIALVDSRMV 139

Query: 121 LTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSEN 180
           LTG+ +YVT+Q NK  PSQSWE T+SL  MVANI+WL NLCLQST DS++V L+GCN++N
Sbjct: 140 LTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLCLQSTDDSSHVGLNGCNTDN 199

Query: 181 KSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNT 240
           K Q W+LY DGTIR+HVN+NYCLTS+QDFGRFV VSKCEDKPQQRW L A+D TI+HPNT
Sbjct: 200 KYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDKPQQRWSLDAKDYTIDHPNT 259

Query: 241 DMVMDVLSVPFDDLPLAVVTNHRDGTATQRWII 269
           DMV+DV SVP    P  +VTN RDG+A+QRW I
Sbjct: 260 DMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTI 291

[Close]
BLAST of CsGy3G018870 vs. TrEMBL
Match: tr|Q9SLV9|Q9SLV9_CUCSA (XSP30 OS=Cucumis sativus OX=3659 GN=XSP30 PE=2 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.3e-102
Identity = 183/273 (67.03%), Postives = 212/273 (77.66%), Query Frame = 0 

Query: 1   MAVPSDYGYQV----VPGATHLVGRDGLCLEMSPWFY-KGSNFPTRLSPCNEQKKQTQLW 60
           +AVP +YGY V    VPGATHLVGRDGLCLEMSPW+   G NFPTRLSPC+E KKQTQLW
Sbjct: 20  IAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGINFPTRLSPCDE-KKQTQLW 79

Query: 61  TVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMV 120
           T++ D TIRPMND++CL + V    I   VVSEC K    NKKW  K D TI  V S MV
Sbjct: 80  TIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPNKKWTQKNDGTIALVDSRMV 139

Query: 121 LTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSEN 180
           LTG+ +YVT+Q NK  PSQSWE T+SL  MVANI+WL NLCLQST DS++V L+GCN++N
Sbjct: 140 LTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLCLQSTDDSSHVGLNGCNTDN 199

Query: 181 KSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRWGLGAEDNTINHPNT 240
           K Q W+LY DGTIR+HVN+NYCLTS+QDFGRFV VSKCEDKPQQRW L A+D TI+HPNT
Sbjct: 200 KYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDKPQQRWSLDAKDYTIDHPNT 259

Query: 241 DMVMDVLSVPFDDLPLAVVTNHRDGTATQRWII 269
           DMV+DV SVP    P  +VTN RDG+A+QRW I
Sbjct: 260 DMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTI 291

[Close]
BLAST of CsGy3G018870 vs. TrEMBL
Match: tr|A0A1S3C2B4|A0A1S3C2B4_CUCME (nigrin b-like OS=Cucumis melo OX=3656 GN=LOC103496222 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.1e-100
Identity = 177/214 (82.71%), Postives = 191/214 (89.25%), Query Frame = 0 

Query: 15  ATHLVGRDGLCLEMSPWFYKGSNFPTRLSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVS 74
           ATHLVGRDG CLEMS WFYKG+  PTRLSPC++ KKQTQ  TVLQD TIRPMNDRYCLV 
Sbjct: 33  ATHLVGRDGFCLEMSSWFYKGNYIPTRLSPCDKHKKQTQFRTVLQDGTIRPMNDRYCLVL 92

Query: 75  YVSVN-FITNVVVSECAKEPHSNKKWIHKEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPS 134
           YV VN FITNVVVSECAKEP+SNKKW HKED TIVH+GS MV+TGN +YVT+QRNKNAPS
Sbjct: 93  YVLVNKFITNVVVSECAKEPNSNKKWTHKEDGTIVHIGSEMVITGNLDYVTLQRNKNAPS 152

Query: 135 QSWEATKSLTPMVANIKWLENLCLQSTKDSNYVQLDGCNSENKSQHWSLYGDGTIRKHVN 194
           QSW+AT+SLTPMV NIKWLENLCLQST+DSNYV LDGCNSENKSQ W+LY DGTIRKHVN
Sbjct: 153 QSWKATESLTPMVVNIKWLENLCLQSTEDSNYVGLDGCNSENKSQRWALYSDGTIRKHVN 212

Query: 195 RNYCLTSEQDFGRFVAVSKCEDKPQQRWGLGAED 228
           RNYCLTSE+  GRFV VSKCEDKPQQRW LGA+D
Sbjct: 213 RNYCLTSEKYSGRFVIVSKCEDKPQQRWDLGAKD 246

The following BLAST results are available for this feature:
BLAST of CsGy3G018870 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146289.17.3e-161100.00PREDICTED: nigrin b-like [Cucumis sativus] >KGN57583.1 hypothetical protein Csa_... [more]
XP_016901886.13.2e-11672.43PREDICTED: nigrin b-like [Cucumis melo][more]
KGN57579.12.0e-10267.03hypothetical protein Csa_3G217160 [Cucumis sativus][more]
NP_001274403.12.0e-10267.03uncharacterized protein LOC101221335 precursor [Cucumis sativus] >BAA88294.1 XSP... [more]
XP_008456219.13.2e-10082.71PREDICTED: nigrin b-like [Cucumis melo][more]
BLAST of CsGy3G018870 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G018870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P33183|NIGB_SAMNI2.7e-2931.40Nigrin b OS=Sambucus nigra OX=4202 PE=1 SV=2[more]
sp|Q41358|SNAIB_SAMNI2.7e-2932.32Ribosome-inactivating protein SNAI OS=Sambucus nigra OX=4202 GN=SNA-I PE=1 SV=1[more]
sp|O22415|SNAIF_SAMNI3.9e-2831.56Ribosome-inactivating protein SNAIf OS=Sambucus nigra OX=4202 GN=SNA-If PE=1 SV=... [more]
sp|P06750|AGGL_RICCO1.2e-2636.36Agglutinin OS=Ricinus communis OX=3988 PE=1 SV=1[more]
sp|Q9M6E9|AGGL_ABRPR1.8e-2532.02Agglutinin-1 OS=Abrus precatorius OX=3816 GN=AAG PE=1 SV=1[more]
BLAST of CsGy3G018870 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L756|A0A0A0L756_CUCSA4.9e-161100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G219180 PE=4 SV=1[more]
tr|A0A1S4E0X9|A0A1S4E0X9_CUCME2.1e-11672.43nigrin b-like OS=Cucumis melo OX=3656 GN=LOC103496121 PE=4 SV=1[more]
tr|A0A0A0L9D1|A0A0A0L9D1_CUCSA1.3e-10267.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G217160 PE=4 SV=1[more]
tr|Q9SLV9|Q9SLV9_CUCSA1.3e-10267.03XSP30 OS=Cucumis sativus OX=3659 GN=XSP30 PE=2 SV=1[more]
tr|A0A1S3C2B4|A0A1S3C2B4_CUCME2.1e-10082.71nigrin b-like OS=Cucumis melo OX=3656 GN=LOC103496222 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035992Ricin_B-like_lectins
IPR000772Ricin_B_lectin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G018870.1CsGy3G018870.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000772Ricin B, lectin domainSMARTSM00458ricin_3coord: 13..139
e-value: 2.1E-6
score: 37.3
coord: 143..269
e-value: 7.0E-14
score: 62.1
IPR000772Ricin B, lectin domainPFAMPF00652Ricin_B_lectincoord: 153..266
e-value: 4.6E-19
score: 68.8
coord: 17..136
e-value: 7.4E-18
score: 64.9
IPR000772Ricin B, lectin domainPROSITEPS50231RICIN_B_LECTINcoord: 142..269
score: 26.457
IPR000772Ricin B, lectin domainPROSITEPS50231RICIN_B_LECTINcoord: 12..139
score: 20.209
IPR000772Ricin B, lectin domainCDDcd00161RICINcoord: 17..137
e-value: 9.54614E-14
score: 64.449
IPR000772Ricin B, lectin domainCDDcd00161RICINcoord: 154..268
e-value: 4.73149E-16
score: 70.9974
NoneNo IPR availableGENE3DG3DSA:2.80.10.50coord: 144..269
e-value: 5.2E-28
score: 99.3
NoneNo IPR availableGENE3DG3DSA:2.80.10.50coord: 13..139
e-value: 2.5E-20
score: 74.6
IPR035992Ricin B-like lectinsSUPERFAMILYSSF50370Ricin B-like lectinscoord: 146..268
IPR035992Ricin B-like lectinsSUPERFAMILYSSF50370Ricin B-like lectinscoord: 11..137