CsGy3G017740 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G017740
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Location	Chr3 : 13697022 .. 13699871 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAAAAAAAACGTTTTGGAGGGAGGAATGGTTGGAGTATTGAAACCATGCAGGTATAAAAGGCCAATCAAAACTTTACGGTTTCCTTCACTATCACCACTCACCGATGAAATTATTTTCCAATCACAGCTCTCATGGAATCACATCCATGCCCAACAATTCTTCCTTCAAACACTCCATTTCCCTCTCCAAACCTTCCTTCCTCTATTCCACATGGCATTCTCCACCACCGCTGGCGGCTTTGGCTGACCCTGTACTCGCCGCCGTCTCCACAGCCATCAACAACGCCCAAACAAAGCCTCTCGCCTCTTCTCTCCGCCGCCTTCTCCCTTCCTTCAAACCCCACCATTTCATCGACCTCATCAACCAAAACCCTTTCTCTCTTTCCCCCTCCTCTCTCTTCTCCTTCTTCAATTGGCTCTCTTCTATCCCCACCTTTCGCCACACTTCTCAATCCTACTGCGCTATGGCTAATTTCCTCTCTGCCCATCAAATGTTCCAAGAATGTCAATCGATTATACGATTTCTTGTCTCCCGCAAAGGCAAGGACTCGGCGGCTTCCGTCTTTGCAGCGATTCTTGACACTGCAGGTACGCGTTGTTCGAATTTTGTTTTTGATGCTTTGATGATTGCATATTGGGATTCCGGATTCGTCTCCGATGCTATTCAGTGTTTTAGGCTGGTTAGGAATAGCAATTTTCAAATCCCGTTTCATGGTTGCGGGTACTTGCTTGATAAAATGATAAATTCGAACTCCCCTGTTACAATTTGGACGTTTTACTCGGAAATTTTGGAATATGGGTTCCCGCCCAAAGTGCAGTATTACAATATTTTGATCAATAAGTTCTGTAAAGAGGGAAGTATTAGAGATGCCAAGTTGATTTTTAATGAAATTAGGAAGAGGGGTTTGCGTCCTACAACTGTTAGTTTCAATACCTTGATTAATGGGCTCTGTAAATCTAGAAATTTAGATGAGGGGTTTAGGTTGAAGAAGACCATGGAAGAGAATAGAATATATCCTGATGTTTTCACTTACAGCGTTCTGATTCATGGATTATGCAAGGAAGGTAGGTTAGATGTTGCAGAACAACTGTTTGATGAAATGCAGCAGAGAGGATTGAGACCAAACGGCATTACGTTCACCGCATTGATTGACGGGCAATGTAGGAGCAGACGAATTGACTCAGCTATGAACACTTATCACCAAATGTTAACCATGGGAGTGAAACCAGATTTGGTTATGTACAATACACTCTTAAATGGCCTTTGCAAGGTTGGGGATGTTAATAAAGCTAGGAAGCTAGTTGATGAAATGAGAATGGTGGGGATGAAACCTGATAAAATCACTTACACCACACTCATAGACGGTTATTGCAAAGAGGGAGATCTAGAATCAGCCATGGAGATTAGGAAAGGGATGAATGAAGAAGGGGTTGTGCTGGATAATGTAGCATTCACAGCCCTTATTTCAGGTTTCTGTAGAGATGGAAGGGTGAGAGATGCAGAGAGGACCTTGAGGGAGATGGTGGAAGCCGGTATGAAACCCGATGATGCCACATATACTATGGTAATCGATGGGTATTGCAAGAAAGGCAATGTTAAGATGGGGTTTAAGCTGCTGAAAGAGATGCAAATCAATGGCCATAAACCTGGTGTCATAACTTATAATGTGCTTATGAATGGACTTTGCAAGCAAGGACAGATGAAGAATGCAAATATGCTATTGGAAGCAATGCTTAATTTAGGAGTAACTCCAGATGACATTACATACAACATTCTTTTGGAAGGGCACTGTAAAAATGGAAAAGCAGAAGATTTGCTTAAACTCAGAAATGAGAAAGGACTCATAGTAGATTATGCGTATTATACTTCTTTAGTCAGTGAATACAATAAATCCTTAAAGGATCGTCAAAAGAGGTGATGAAAGATTTGTTGTTGAGTGTTAACTTTTTCAGTTTGCAAGAGAATCCACATTGTAGATAAAGGGTTGTCTATGCATATAGGAGCTTGGAACTTCTTAAAAATTAAAAAAGAAGTGAAGGAGAAGGACAATGTGTTCAAATTTCATGGCGGCAATCTAGATGAGGTATCAACTCTTACAACCTTCTTGATAATCAAATTATGGAATGGTGGGTAGAGTTAGACATTTATCTCTCTAGATTAGTTAAGGTACACATGCTCTGAAACGAGAGAGAAAATGCTTTGCGTAACTCTTCTTTTTATACCGTTTGCATAATCGTCCATGGACGAGCTTGATTATAGGGAGTTGTTTGAAAATTTCTATTCTTATTTGAAAATTGTTTTTTCATCTGTGTATTGTAAAGCCCTCCCCAGGTAGGCACTAGATGCATGTCCACGCCTAAGGCTCATTCGAACAATTTTCATTATTTTTAAAAATATAATAATTTTAGTTTTTTCTTTCTTTATTAATTAAAAGGTTAAATTATTTAAAGTGTAAATGCAAAATTCCTGATCTTTATGGTTTTTTTCTCTTTTTAAATTCTCCCACTCCAACCATGTTCTTTTTAGCTTTAAGATTAATTTGACACCTCCAAAGTAGTGATATAATTATTCGTTTAGAGTTTAATCAATACAATCTCTAAGTTTAGACGGTATAAATTGATACTTGTCTTATTATTATATTATTTTGTGATATGAAGCATACTTTTTTTTGTTGTTGTAGCATAACCAATGTATCATGTTCGAGCGTATTAGCTAAAACTCATTTCAAGTCTGTATGAAATAAAACCAAGAAGTATATAATTCAATTGATAGAAAATATGTATCATTGACTAAGAGACAAAAGGAACGAGTTATCACCCATACACGTTATTAAACTAAAAGACAG

mRNA sequence

GAAAAAAAAAAAACGTTTTGGAGGGAGGAATGGTTGGAGTATTGAAACCATGCAGGTATAAAAGGCCAATCAAAACTTTACGGTTTCCTTCACTATCACCACTCACCGATGAAATTATTTTCCAATCACAGCTCTCATGGAATCACATCCATGCCCAACAATTCTTCCTTCAAACACTCCATTTCCCTCTCCAAACCTTCCTTCCTCTATTCCACATGGCATTCTCCACCACCGCTGGCGGCTTTGGCTGACCCTGTACTCGCCGCCGTCTCCACAGCCATCAACAACGCCCAAACAAAGCCTCTCGCCTCTTCTCTCCGCCGCCTTCTCCCTTCCTTCAAACCCCACCATTTCATCGACCTCATCAACCAAAACCCTTTCTCTCTTTCCCCCTCCTCTCTCTTCTCCTTCTTCAATTGGCTCTCTTCTATCCCCACCTTTCGCCACACTTCTCAATCCTACTGCGCTATGGCTAATTTCCTCTCTGCCCATCAAATGTTCCAAGAATGTCAATCGATTATACGATTTCTTGTCTCCCGCAAAGGCAAGGACTCGGCGGCTTCCGTCTTTGCAGCGATTCTTGACACTGCAGGTAGGTTAGATGTTGCAGAACAACTGTTTGATGAAATGCAGCAGAGAGGATTGAGACCAAACGGCATTACGTTCACCGCATTGATTGACGGGCAATGTAGGAGCAGACGAATTGACTCAGCTATGAACACTTATCACCAAATGTTAACCATGGGAGTGAAACCAGATTTGGTTATGTACAATACACTCTTAAATGGCCTTTGCAAGGTTGGGGATGTTAATAAAGCTAGGAAGCTAGTTGATGAAATGAGAATGGTGGGGATGAAACCTGATAAAATCACTTACACCACACTCATAGACGGTTATTGCAAAGAGGGAGATCTAGAATCAGCCATGGAGATTAGGAAAGGGATGAATGAAGAAGGGGTTGTGCTGGATAATGTAGCATTCACAGCCCTTATTTCAGGTTTCTGTAGAGATGGAAGGGTGAGAGATGCAGAGAGGACCTTGAGGGAGATGGTGGAAGCCGGTATGAAACCCGATGATGCCACATATACTATGGTAATCGATGGGTATTGCAAGAAAGGCAATGTTAAGATGGGGTTTAAGCTGCTGAAAGAGATGCAAATCAATGGCCATAAACCTGGTGTCATAACTTATAATGTGCTTATGAATGGACTTTGCAAGCAAGGACAGATGAAGAATGCAAATATGCTATTGGAAGCAATGCTTAATTTAGGAGTAACTCCAGATGACATTACATACAACATTCTTTTGGAAGGGCACTGTAAAAATGGAAAAGCAGAAGATTTGCTTAAACTCAGAAATGAGAAAGGACTCATAGTAGATTATGCGTATTATACTTCTTTAGTCAGTGAATACAATAAATCCTTAAAGGATCGTCAAAAGAGGTGATGAAAGATTTGTTGTTGAGTGTTAACTTTTTCAGTTTGCAAGAGAATCCACATTGTAGATAAAGGGTTGTCTATGCATATAGGAGCTTGGAACTTCTTAAAAATTAAAAAAGAAGTGAAGGAGAAGGACAATGTGTTCAAATTTCATGGCGGCAATCTAGATGAGGTATCAACTCTTACAACCTTCTTGATAATCAAATTATGGAATGGTGGGTAGAGTTAGACATTTATCTCTCTAGATTAGTTAAGGTACACATGCTCTGAAACGAGAGAGAAAATGCTTTGCGTAACTCTTCTTTTTATACCGTTTGCATAATCGTCCATGGACGAGCTTGATTATAGGGAGTTGTTTGAAAATTTCTATTCTTATTTGAAAATTGTTTTTTCATCTGTGTATTGTAAAGCCCTCCCCAGGTAGGCACTAGATGCATGTCCACGCCTAAGGCTCATTCGAACAATTTTCATTATTTTTAAAAATATAATAATTTTAGTTTTTTCTTTCTTTATTAATTAAAAGGTTAAATTATTTAAAGTGTAAATGCAAAATTCCTGATCTTTATGGTTTTTTTCTCTTTTTAAATTCTCCCACTCCAACCATGTTCTTTTTAGCTTTAAGATTAATTTGACACCTCCAAAGTAGTGATATAATTATTCGTTTAGAGTTTAATCAATACAATCTCTAAGTTTAGACGGTATAAATTGATACTTGTCTTATTATTATATTATTTTGTGATATGAAGCATACTTTTTTTTGTTGTTGTAGCATAACCAATGTATCATGTTCGAGCGTATTAGCTAAAACTCATTTCAAGTCTGTATGAAATAAAACCAAGAAGTATATAATTCAATTGATAGAAAATATGTATCATTGACTAAGAGACAAAAGGAACGAGTTATCACCCATACACGTTATTAAACTAAAAGACAG

Coding sequence (CDS)

ATGAAATTATTTTCCAATCACAGCTCTCATGGAATCACATCCATGCCCAACAATTCTTCCTTCAAACACTCCATTTCCCTCTCCAAACCTTCCTTCCTCTATTCCACATGGCATTCTCCACCACCGCTGGCGGCTTTGGCTGACCCTGTACTCGCCGCCGTCTCCACAGCCATCAACAACGCCCAAACAAAGCCTCTCGCCTCTTCTCTCCGCCGCCTTCTCCCTTCCTTCAAACCCCACCATTTCATCGACCTCATCAACCAAAACCCTTTCTCTCTTTCCCCCTCCTCTCTCTTCTCCTTCTTCAATTGGCTCTCTTCTATCCCCACCTTTCGCCACACTTCTCAATCCTACTGCGCTATGGCTAATTTCCTCTCTGCCCATCAAATGTTCCAAGAATGTCAATCGATTATACGATTTCTTGTCTCCCGCAAAGGCAAGGACTCGGCGGCTTCCGTCTTTGCAGCGATTCTTGACACTGCAGGTAGGTTAGATGTTGCAGAACAACTGTTTGATGAAATGCAGCAGAGAGGATTGAGACCAAACGGCATTACGTTCACCGCATTGATTGACGGGCAATGTAGGAGCAGACGAATTGACTCAGCTATGAACACTTATCACCAAATGTTAACCATGGGAGTGAAACCAGATTTGGTTATGTACAATACACTCTTAAATGGCCTTTGCAAGGTTGGGGATGTTAATAAAGCTAGGAAGCTAGTTGATGAAATGAGAATGGTGGGGATGAAACCTGATAAAATCACTTACACCACACTCATAGACGGTTATTGCAAAGAGGGAGATCTAGAATCAGCCATGGAGATTAGGAAAGGGATGAATGAAGAAGGGGTTGTGCTGGATAATGTAGCATTCACAGCCCTTATTTCAGGTTTCTGTAGAGATGGAAGGGTGAGAGATGCAGAGAGGACCTTGAGGGAGATGGTGGAAGCCGGTATGAAACCCGATGATGCCACATATACTATGGTAATCGATGGGTATTGCAAGAAAGGCAATGTTAAGATGGGGTTTAAGCTGCTGAAAGAGATGCAAATCAATGGCCATAAACCTGGTGTCATAACTTATAATGTGCTTATGAATGGACTTTGCAAGCAAGGACAGATGAAGAATGCAAATATGCTATTGGAAGCAATGCTTAATTTAGGAGTAACTCCAGATGACATTACATACAACATTCTTTTGGAAGGGCACTGTAAAAATGGAAAAGCAGAAGATTTGCTTAAACTCAGAAATGAGAAAGGACTCATAGTAGATTATGCGTATTATACTTCTTTAGTCAGTGAATACAATAAATCCTTAAAGGATCGTCAAAAGAGGTGA

Protein sequence

MKLFSNHSSHGITSMPNNSSFKHSISLSKPSFLYSTWHSPPPLAALADPVLAAVSTAINNAQTKPLASSLRRLLPSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDLLKLRNEKGLIVDYAYYTSLVSEYNKSLKDRQKR

Homology

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BLAST of CsGy3G017740 vs. NCBI nr
Match: KGN57460.1 (hypothetical protein Csa_3G188330 [Cucumis sativus])

HSP 1 Score: 316.2 bits (809), Expect = 1.7e-82
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MKLFSNHSSHGITSMPNNSSFKHSISLSKPSFLYSTWHSPPPLAALADPVLAAVSTAINN 60
           MKLFSNHSSHGITSMPNNSSFKHSISLSKPSFLYSTWHSPPPLAALADPVLAAVSTAINN
Sbjct: 1   MKLFSNHSSHGITSMPNNSSFKHSISLSKPSFLYSTWHSPPPLAALADPVLAAVSTAINN 60

Query: 61  AQTKPLASSLRRLLPSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCA 120
           AQTKPLASSLRRLLPSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCA
Sbjct: 61  AQTKPLASSLRRLLPSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCA 120

Query: 121 MANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAG 163
           MANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAG
Sbjct: 121 MANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAG 162

HSP 2 Score: 69.7 bits (169), Expect = 2.8e-08
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 412 LLKLRNEKGLIVDYAYYTSLVSEYNKSLKDRQKR 446
           LLKLRNEKGLIVDYAYYTSLVSEYNKSLKDRQKR
Sbjct: 496 LLKLRNEKGLIVDYAYYTSLVSEYNKSLKDRQKR 529

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BLAST of CsGy3G017740 vs. NCBI nr
Match: XP_004140820.2 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Cucumis sativus])

HSP 1 Score: 316.2 bits (809), Expect = 1.7e-82
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MKLFSNHSSHGITSMPNNSSFKHSISLSKPSFLYSTWHSPPPLAALADPVLAAVSTAINN 60
           MKLFSNHSSHGITSMPNNSSFKHSISLSKPSFLYSTWHSPPPLAALADPVLAAVSTAINN
Sbjct: 1   MKLFSNHSSHGITSMPNNSSFKHSISLSKPSFLYSTWHSPPPLAALADPVLAAVSTAINN 60

Query: 61  AQTKPLASSLRRLLPSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCA 120
           AQTKPLASSLRRLLPSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCA
Sbjct: 61  AQTKPLASSLRRLLPSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCA 120

Query: 121 MANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAG 163
           MANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAG
Sbjct: 121 MANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAG 162

HSP 2 Score: 69.7 bits (169), Expect = 2.8e-08
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 412 LLKLRNEKGLIVDYAYYTSLVSEYNKSLKDRQKR 446
           LLKLRNEKGLIVDYAYYTSLVSEYNKSLKDRQKR
Sbjct: 571 LLKLRNEKGLIVDYAYYTSLVSEYNKSLKDRQKR 604

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BLAST of CsGy3G017740 vs. NCBI nr
Match: XP_008457121.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Cucumis melo])

HSP 1 Score: 266.2 bits (679), Expect = 2.1e-67
Identity = 137/148 (92.57%), Postives = 141/148 (95.27%), Query Frame = 0


Query: 15  MPNNSSFKHSISLSKPSFLYSTWHSPPPLAALADPVLAAVSTAINNAQTKPLASSLRRLL 74
           M NNSSFK SISLSKPSF YSTWHSPPP AA+ADP+LAAVSTAINNAQTKPLASSLRRLL
Sbjct: 1   MANNSSFKLSISLSKPSFRYSTWHSPPPPAAVADPLLAAVSTAINNAQTKPLASSLRRLL 60

Query: 75  PSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCAMANFLSAHQMFQEC 134
           PSFKPHHFIDLIN NPFSLSP SLFSFFNWLSS+PTFRHTSQSYCAMANFLSAHQMF+EC
Sbjct: 61  PSFKPHHFIDLINHNPFSLSPLSLFSFFNWLSSMPTFRHTSQSYCAMANFLSAHQMFEEC 120

Query: 135 QSIIRFLVSRKGKDSAASVFAAILDTAG 163
           QSIIRFLVSRKGKDSAASVFAAILD AG
Sbjct: 121 QSIIRFLVSRKGKDSAASVFAAILDIAG 148

HSP 2 Score: 65.9 bits (159), Expect = 4.1e-07
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 412 LLKLRNEKGLIVDYAYYTSLVSEYNKSLKDRQKR 446
           LLKLRNEKGLI+DYAYYTSLV EY+KSLKDRQKR
Sbjct: 557 LLKLRNEKGLIIDYAYYTSLVGEYDKSLKDRQKR 590

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BLAST of CsGy3G017740 vs. NCBI nr
Match: XP_023526542.1 (putative pentatricopeptide repeat-containing protein At1g09680 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.1 bits (601), Expect = 2.3e-58
Identity = 127/154 (82.47%), Postives = 134/154 (87.01%), Query Frame = 0


Query: 10  HGITSMPNNSSFK---HSISL-SKPSFLYSTWHSPPPLAALADPVLAAVSTAINNAQTKP 69
           H ITSM  NS+FK    S SL SKPSF YSTWHSP P AA  DPVLAAVSTAINN +TKP
Sbjct: 23  HRITSMAANSTFKLSNFSNSLPSKPSFRYSTWHSPLPPAAAGDPVLAAVSTAINNVETKP 82

Query: 70  LASSLRRLLPSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCAMANFL 129
           LASSLRRLLPSFKPHHFIDLIN NPFSLSP SLFSFFNWLSS+PTFRHT QSYCAMANFL
Sbjct: 83  LASSLRRLLPSFKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFL 142

Query: 130 SAHQMFQECQSIIRFLVSRKGKDSAASVFAAILD 160
            AHQMF+E QSI+RFLVSRKGKDSAAS+FAAIL+
Sbjct: 143 CAHQMFEESQSIVRFLVSRKGKDSAASIFAAILE 176

HSP 2 Score: 59.3 bits (142), Expect = 3.8e-05
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 413 LKLRNEKGLIVDYAYYTSLVSEYNKSLKDRQKR 446
           L LRNEKG++VDYAYYTSLV EY+KSLKDR+KR
Sbjct: 589 LHLRNEKGVVVDYAYYTSLVGEYDKSLKDRRKR 621

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BLAST of CsGy3G017740 vs. NCBI nr
Match: XP_022934877.1 (putative pentatricopeptide repeat-containing protein At1g09680 [Cucurbita moschata])

HSP 1 Score: 229.2 bits (583), Expect = 2.8e-56
Identity = 123/149 (82.55%), Postives = 130/149 (87.25%), Query Frame = 0


Query: 15  MPNNSSFK---HSISL-SKPSFLYSTWHSPPPLAALADPVLAAVSTAINNAQTKPLASSL 74
           M  NS+FK    S SL SKPSF YSTWHSP P AA ADPVLAAVSTAINN +TKPLASSL
Sbjct: 1   MAANSTFKLSNFSNSLPSKPSFRYSTWHSPLPPAAAADPVLAAVSTAINNVETKPLASSL 60

Query: 75  RRLLPSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCAMANFLSAHQM 134
           RRLLPSFKPHHFIDLIN NPFSLSP SLFSFFNWLSS+PTFRHT QSYCAMANFL  HQM
Sbjct: 61  RRLLPSFKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCVHQM 120

Query: 135 FQECQSIIRFLVSRKGKDSAASVFAAILD 160
           F+E QSI+RFLVSRKGKDSAAS+FAAIL+
Sbjct: 121 FEESQSIVRFLVSRKGKDSAASIFAAILE 149

HSP 2 Score: 60.5 bits (145), Expect = 1.7e-05
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 413 LKLRNEKGLIVDYAYYTSLVSEYNKSLKDRQKR 446
           L LRNEKGL+VDYAYYTSLV EY+KSLKDR+KR
Sbjct: 562 LHLRNEKGLVVDYAYYTSLVGEYDKSLKDRRKR 594

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BLAST of CsGy3G017740 vs. TAIR10
Match: AT1G09680.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-25
Identity = 66/151 (43.71%), Postives = 94/151 (62.25%), Query Frame = 0


Query: 20  SFKHSISLSKPSFLYSTWHSPPPLAAL---ADPVLAAVSTAINNAQTKPL--------AS 79
           S  H    S+ SFL STW+S   ++A     DPVL  +S AI ++   P           
Sbjct: 12  SQSHPQRFSRASFLLSTWYSQESVSAADNDDDPVLVKLSVAIRDSYKDPPLEFSSFTDCP 71

Query: 80  SLRRLLPSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCAMANFLSAH 139
           S+R++LPS   HH +DLIN NP SL   S+F+FF ++SS P FR T ++Y  +A FL+ H
Sbjct: 72  SIRKVLPSLSVHHVVDLINHNPLSLPQRSIFAFFKFISSQPGFRFTVETYFVLARFLAVH 131

Query: 140 QMFQECQSIIRFLVSRKGKDSAASVFAAILD 160
           +MF E QS+I  +VSRKGK+SA+SVF ++++
Sbjct: 132 EMFTEAQSLIELVVSRKGKNSASSVFISLVE 162

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BLAST of CsGy3G017740 vs. TAIR10
Match: AT1G26500.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 44.7 bits (104), Expect = 1.8e-04
Identity = 24/75 (32.00%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 121 MANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILD---TAGRLDVAEQLFDEMQQR 180
           M   L  +Q F E   +   +VS++G D     +  ++D     GR+D+A ++FDEM++R
Sbjct: 257 METLLKKNQ-FDEASKVFYVMVSKRGGDLDGGFYRVMIDWLCKNGRIDMARKVFDEMRER 316

Query: 181 GLRPNGITFTALIDG 193
           G+  + +T+ +LI G
Sbjct: 317 GVYVDNLTWASLIYG 330

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BLAST of CsGy3G017740 vs. TAIR10
Match: AT5G08310.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 43.1 bits (100), Expect = 5.1e-04
Identity = 28/101 (27.72%), Postives = 51/101 (50.50%), Query Frame = 0


Query: 99  FSFFNWLSSIPTFRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRK--GKDSAASVFAA 158
           + FFNW S    +R+   +Y AMA+ LS  +     ++++  +++ +      A   F  
Sbjct: 90  YLFFNWASKQEGYRNDMYAYNAMASILSRARQNASLKALVVDVLNSRCFMSPGAFGFFIR 149

Query: 159 ILDTAGRLDVAEQLFDEMQQRGL-RPNGITFTALIDGQCRS 197
            L  AG +D A  +FD +++ GL  PN  T+  L++   +S
Sbjct: 150 CLGNAGLVDEASSVFDRVREMGLCVPNAYTYNCLLEAISKS 190

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BLAST of CsGy3G017740 vs. Swiss-Prot
Match: sp|O04491|PPR26_ARATH (Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana OX=3702 GN=At1g09680 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.9e-24
Identity = 66/151 (43.71%), Postives = 94/151 (62.25%), Query Frame = 0


Query: 20  SFKHSISLSKPSFLYSTWHSPPPLAAL---ADPVLAAVSTAINNAQTKPL--------AS 79
           S  H    S+ SFL STW+S   ++A     DPVL  +S AI ++   P           
Sbjct: 12  SQSHPQRFSRASFLLSTWYSQESVSAADNDDDPVLVKLSVAIRDSYKDPPLEFSSFTDCP 71

Query: 80  SLRRLLPSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCAMANFLSAH 139
           S+R++LPS   HH +DLIN NP SL   S+F+FF ++SS P FR T ++Y  +A FL+ H
Sbjct: 72  SIRKVLPSLSVHHVVDLINHNPLSLPQRSIFAFFKFISSQPGFRFTVETYFVLARFLAVH 131

Query: 140 QMFQECQSIIRFLVSRKGKDSAASVFAAILD 160
           +MF E QS+I  +VSRKGK+SA+SVF ++++
Sbjct: 132 EMFTEAQSLIELVVSRKGKNSASSVFISLVE 162

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BLAST of CsGy3G017740 vs. TrEMBL
Match: tr|A0A0A0L668|A0A0A0L668_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G188330 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.1e-82
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MKLFSNHSSHGITSMPNNSSFKHSISLSKPSFLYSTWHSPPPLAALADPVLAAVSTAINN 60
           MKLFSNHSSHGITSMPNNSSFKHSISLSKPSFLYSTWHSPPPLAALADPVLAAVSTAINN
Sbjct: 1   MKLFSNHSSHGITSMPNNSSFKHSISLSKPSFLYSTWHSPPPLAALADPVLAAVSTAINN 60

Query: 61  AQTKPLASSLRRLLPSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCA 120
           AQTKPLASSLRRLLPSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCA
Sbjct: 61  AQTKPLASSLRRLLPSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCA 120

Query: 121 MANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAG 163
           MANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAG
Sbjct: 121 MANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAG 162

HSP 2 Score: 69.7 bits (169), Expect = 1.9e-08
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 412 LLKLRNEKGLIVDYAYYTSLVSEYNKSLKDRQKR 446
           LLKLRNEKGLIVDYAYYTSLVSEYNKSLKDRQKR
Sbjct: 496 LLKLRNEKGLIVDYAYYTSLVSEYNKSLKDRQKR 529

[Close]

BLAST of CsGy3G017740 vs. TrEMBL
Match: tr|A0A1S3C629|A0A1S3C629_CUCME (putative pentatricopeptide repeat-containing protein At1g09680 OS=Cucumis melo OX=3656 GN=LOC103496868 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.4e-67
Identity = 137/148 (92.57%), Postives = 141/148 (95.27%), Query Frame = 0


Query: 15  MPNNSSFKHSISLSKPSFLYSTWHSPPPLAALADPVLAAVSTAINNAQTKPLASSLRRLL 74
           M NNSSFK SISLSKPSF YSTWHSPPP AA+ADP+LAAVSTAINNAQTKPLASSLRRLL
Sbjct: 1   MANNSSFKLSISLSKPSFRYSTWHSPPPPAAVADPLLAAVSTAINNAQTKPLASSLRRLL 60

Query: 75  PSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCAMANFLSAHQMFQEC 134
           PSFKPHHFIDLIN NPFSLSP SLFSFFNWLSS+PTFRHTSQSYCAMANFLSAHQMF+EC
Sbjct: 61  PSFKPHHFIDLINHNPFSLSPLSLFSFFNWLSSMPTFRHTSQSYCAMANFLSAHQMFEEC 120

Query: 135 QSIIRFLVSRKGKDSAASVFAAILDTAG 163
           QSIIRFLVSRKGKDSAASVFAAILD AG
Sbjct: 121 QSIIRFLVSRKGKDSAASVFAAILDIAG 148

HSP 2 Score: 65.9 bits (159), Expect = 2.7e-07
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 412 LLKLRNEKGLIVDYAYYTSLVSEYNKSLKDRQKR 446
           LLKLRNEKGLI+DYAYYTSLV EY+KSLKDRQKR
Sbjct: 557 LLKLRNEKGLIIDYAYYTSLVGEYDKSLKDRQKR 590

[Close]

BLAST of CsGy3G017740 vs. TrEMBL
Match: tr|A0A2P5EU75|A0A2P5EU75_9ROSA (Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_151670 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.1e-35
Identity = 91/161 (56.52%), Postives = 112/161 (69.57%), Query Frame = 0


Query: 15  MPNNSSFKHSISLSKPSF-LYSTWHSPPPLAALADPVLAAVSTAINNAQTKPLASSLRRL 74
           M NN S       ++ SF   +TW+SPP      DPVL A+S AINN+QTKPL SSL+ L
Sbjct: 1   MRNNHSLSLGRIRNRNSFSTTATWYSPPLPPRHGDPVLLAISEAINNSQTKPLESSLKGL 60

Query: 75  LPSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCAMANFLSAHQMFQE 134
           LPS    H I+LIN NP SLSP SL SFFNWL++ PTFRHT  SYCAMA+FL A ++   
Sbjct: 61  LPSLTARHLINLINFNPHSLSPLSLLSFFNWLTTQPTFRHTLHSYCAMAHFLCASRLDPH 120

Query: 135 CQSIIRFLVSRKGKDSAASVFAAILDTAGRLDVAEQLFDEM 175
            QS++RFLVSRKGKDSA+SVFAAI++T G    +  +FD +
Sbjct: 121 AQSLLRFLVSRKGKDSASSVFAAIVETRGTYQ-SNAVFDSL 160

[Close]

BLAST of CsGy3G017740 vs. TrEMBL
Match: tr|A0A2P2MZM6|A0A2P2MZM6_RHIMU (Uncharacterized protein MANES_01G119900 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.7e-31
Identity = 80/152 (52.63%), Postives = 108/152 (71.05%), Query Frame = 0


Query: 12  ITSMPNNSSFKHSISLSKPSFLYSTWHSPPPLAAL-ADPVLAAVSTAINNAQTKPLASSL 71
           I  +    S K  +SL   S  Y +W+SPP L+    +P+L+A+S AI N++T+PL  SL
Sbjct: 7   ILKVSRTQSLKILLSLYS-STRYCSWYSPPSLSPCHGNPILSAISEAIKNSETRPLHISL 66

Query: 72  RRLLPSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCAMANFLSAHQM 131
           + ++PS +PHH IDLIN NP SLSP SL SFFN+LSS   F  T Q YCAM +FLSAH+M
Sbjct: 67  KNVIPSLRPHHVIDLINHNPHSLSPPSLISFFNFLSSRTAFPLTVQCYCAMVHFLSAHRM 126

Query: 132 FQECQSIIRFLVSRKGKDSAASVFAAILDTAG 163
           + E +S++ F+VSRKGK SA+SVFA+I++T G
Sbjct: 127 YPEVRSLLYFVVSRKGKGSASSVFASIIETKG 157

[Close]

BLAST of CsGy3G017740 vs. TrEMBL
Match: tr|A0A2P5AAD1|A0A2P5AAD1_PARAD (Tetratricopeptide-like helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_352250 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.5e-31
Identity = 76/135 (56.30%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 28  SKPSFLYSTWHSPPPLAALADPVLAAVSTAINNAQTKPLASSLRRLLPSFKPHHFIDLIN 87
           ++ SF  + W+           VL A+S AINN+QTKPL SSL+ +LPS    H I+LIN
Sbjct: 12  NRSSFSATAWYXXXXXXXXXXXVLLAISEAINNSQTKPLESSLKGILPSLTSRHLINLIN 71

Query: 88  QNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGK 147
            NP SLSP SL SFFNWL++ PTFRHT  SYCAMA+FL A+++ Q  QS++RF+ SRKGK
Sbjct: 72  FNPHSLSPLSLLSFFNWLTTQPTFRHTLHSYCAMAHFLCANRLDQHAQSLLRFVASRKGK 131

Query: 148 DSAASVFAAILDTAG 163
           +SA+SVFAAI++T G
Sbjct: 132 NSASSVFAAIVETRG 146

The following BLAST results are available for this feature:

BLAST of CsGy3G017740 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57460.1	1.7e-82	100.00	hypothetical protein Csa_3G188330 [Cucumis sativus]	[more]
XP_004140820.2	1.7e-82	100.00	PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Cucum...	[more]
XP_008457121.1	2.1e-67	92.57	PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Cucum...	[more]
XP_023526542.1	2.3e-58	82.47	putative pentatricopeptide repeat-containing protein At1g09680 [Cucurbita pepo s...	[more]
XP_022934877.1	2.8e-56	82.55	putative pentatricopeptide repeat-containing protein At1g09680 [Cucurbita moscha...	[more]

BLAST of CsGy3G017740 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09680.1	1.1e-25	43.71	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G26500.1	1.8e-04	32.00	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G08310.1	5.1e-04	27.72	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CsGy3G017740 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O04491\|PPR26_ARATH	1.9e-24	43.71	Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis th...	[more]

BLAST of CsGy3G017740 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L668\|A0A0A0L668_CUCSA	1.1e-82	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G188330 PE=4 SV=1	[more]
tr\|A0A1S3C629\|A0A1S3C629_CUCME	1.4e-67	92.57	putative pentatricopeptide repeat-containing protein At1g09680 OS=Cucumis melo O...	[more]
tr\|A0A2P5EU75\|A0A2P5EU75_9ROSA	3.1e-35	56.52	Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_151670 PE=4 ...	[more]
tr\|A0A2P2MZM6\|A0A2P2MZM6_RHIMU	2.7e-31	52.63	Uncharacterized protein MANES_01G119900 OS=Rhizophora mucronata OX=61149 PE=4 SV...	[more]
tr\|A0A2P5AAD1\|A0A2P5AAD1_PARAD	3.5e-31	56.30	Tetratricopeptide-like helical domain containing protein OS=Parasponia andersoni...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G017740.1	CsGy3G017740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 94..279 e-value: 1.1E-43 score: 151.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 351..421 e-value: 1.9E-19 score: 71.9 coord: 280..350 e-value: 2.2E-21 score: 78.2
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 356..405 e-value: 6.0E-17 score: 61.5 coord: 216..265 e-value: 2.8E-18 score: 65.7 coord: 287..335 e-value: 4.9E-16 score: 58.5 coord: 160..195 e-value: 3.4E-9 score: 36.6
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 289..322 e-value: 1.3E-9 score: 35.7 coord: 254..287 e-value: 8.1E-9 score: 33.1 coord: 359..392 e-value: 1.2E-7 score: 29.4 coord: 219..252 e-value: 1.7E-10 score: 38.4 coord: 161..182 e-value: 4.2E-4 score: 18.3 coord: 184..217 e-value: 1.6E-7 score: 29.1 coord: 325..357 e-value: 3.0E-9 score: 34.5 coord: 394..417 e-value: 9.9E-4 score: 17.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 146..181 score: 8.67
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 287..321 score: 13.252
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 217..251 score: 13.329
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 182..216 score: 11.553
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 322..356 score: 12.452
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 392..422 score: 7.256
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 357..391 score: 11.904
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 252..286 score: 12.496
None	No IPR available	PANTHER	PTHR24015:SF923	SUBFAMILY NOT NAMED	coord: 157..445
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 27..152
None	No IPR available	PANTHER	PTHR24015:SF923	SUBFAMILY NOT NAMED	coord: 27..152
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 157..445

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G017740	Cla013136	Watermelon (97103) v1	cgybwmB229
CsGy3G017740	Csa3G188330	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G017740	ClCG05G010640	Watermelon (Charleston Gray)	cgybwcgB214
CsGy3G017740	CSPI03G17770	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G017740	CmaCh14G008690	Cucurbita maxima (Rimu)	cgybcmaB312
CsGy3G017740	CmoCh14G008860	Cucurbita moschata (Rifu)	cgybcmoB285
CsGy3G017740	Lsi05G002720	Bottle gourd (USVL1VR-Ls)	cgyblsiB198
CsGy3G017740	Cp4.1LG03g05680	Cucurbita pepo (Zucchini)	cgybcpeB401
CsGy3G017740	MELO3C032020.2	Melon (DHL92) v3.6.1	cgybmedB215
CsGy3G017740	CsaV3_3G017850	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G017740	Cla97C05G092980	Watermelon (97103) v2	cgybwmbB206
CsGy3G017740	Bhi01G001315	Wax gourd	cgybwgoB271
CsGy3G017740	Carg24241	Silver-seed gourd	carcgybB0190

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G017740	Cucurbita maxima (Rimu)	cgybcmaB371
CsGy3G017740	Cucurbita moschata (Rifu)	cgybcmoB342
CsGy3G017740	Cucurbita pepo (Zucchini)	cgybcpeB383
CsGy3G017740	Melon (DHL92) v3.5.1	cgybmeB210
CsGy3G017740	Silver-seed gourd	carcgybB0758