Carg24241 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24241
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat
Location	Cucurbita_argyrosperma_scaffold_191 : 176590 .. 178374 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCAATTCCACATTCAAACTCTCCAATTTCTCCAATTCCCTCCCCTCCAAACCTTCCTTCCGCTACTCCACATGGCACTCCCCACTGCCTCCGGCGGCGGCAGCTGATCCTGTACTCGCCGCCGTCTCCACAGCCATCAACAACGTCGAAACAAAGCCTCTCGCCTCTTCTCTTCGGCGGCTCCTCCCTTCCTTCAAACCCCACCATTTCATCGACCTCATTAACCATAACCCCTTCTCTCTCTCCCCTGTCTCTCTCTTCTCCTTCTTCAATTGGCTCTCTTCTGTCCCCACCTTTCGCCACACCCTCCAATCCTACTGCGCTATGGCTAATTTCCTCTGCGCGCATCAAATGTTCGAAGAATCACAATCGATCGTCCGATTTCTCGTCTCCCGCAAAGGTAAGGACTCGGCGGCTTCGATCTTCGCCGCGATTCTTGAAATTACAGATACGCGTTGTTCAAATTTTGTATTTGATGCTTTGATGATTGCGTATTCGGATTCTGGGTTCATCTCCGATGCGATTCAGTGTTTCAGGTTGGTCAGGAAGAGAAATTTTCAAATCCCGTTTCGTGGATGTGAGTACTTACTTGATAAAATGATGAATTCAAACTCCCCTGTTACGATTTGGACGTTTTATCTGGAAATTTTGGATTCTGGGTTCCCACCTAAAGTAAAGTATTTCAACATTTTGATTAATAAGTTCTGTAAACAGGGAAGCATTAGAGATGCCAGGTTGATCTTCGATGAAATTGGGAAGAGGGGTTTTCGTCCCACAGCTGTTAGTTTCAATACCTTGATTAATGGGCTCTGTAAATCCCGAAATTTAGATGAGTGTTTTAGGTTGAAGAAAGCCATGGAAGAGAATAGAATACATCCCGATGTTTACACTTACAGTGTTCTGATTCATGGGTTATGCAAGGAAGGTAAGGTAGACGATGCAGAACAACTGTTCGACGAAATGCGTCAGAGAGGATTGAGGCCAAACGACGTTACATTCACTGCTTTGATTGATGGGCAATGCAGGAGCGGACGAATTGACTCAGCCATGAACACTTATCAGCAAATGTTAGCCATGGGAGTGAAACCAGATTTAGTTATGTATAACACACTCATAAATGGCCTCTGCAAAGTTGGGGATGTTAGTAAAGCTAGGAAGCTAGTTGATGAAATGAAAATGGTGGGGATGAAACCAGATAAAATCACTTACACAACACTCATAGATGGTTACTGCAAAGAGGGAGATTTAGAATCAGCCATGGAGATTAGGAAAGGGATGAATGAAGAAGGGGTTGTTCTTGATAATGTAGCATTCACAGCCATTATTTCAGGTTTGTGTAGAGATGGAAGGGTGATGGATGCAGAGAGGACCTTGAGGGAGATGAAGGAAGCTGGGATGAAACCCGACGACGCGACGTATACTATGGTGATCGACGGGTATTGCAAGAACGGCGATGTTAAGACGGGGTTTAAGCTGCTGAAAGAGATGCAGAGAAATGGGCATAATCCTGGTGTGATAACTTACAATGTGCTTATGAATGGGCTTTGCAAGCAAGGACAGATGAAGAATGCCAATATGCTGTTGGAAGCAATGCTCAACTTAGGAGTAACTCCTGATGACATTACATACAATATTCTGTTGGAAGGGCACTGTAAGAGTGGAAGAGCTGAAGATTTCCTTCACCTCAGAAATGAGAAAGGGCTCGTAGTAGACTACGCGTATTATACTTCTTTAGTCGGTGAATACGATAAATCATTAAAGGATCGTCGAAAGAGGTGA

mRNA sequence

ATGGCCGCCAATTCCACATTCAAACTCTCCAATTTCTCCAATTCCCTCCCCTCCAAACCTTCCTTCCGCTACTCCACATGGCACTCCCCACTGCCTCCGGCGGCGGCAGCTGATCCTGTACTCGCCGCCGTCTCCACAGCCATCAACAACGTCGAAACAAAGCCTCTCGCCTCTTCTCTTCGGCGGCTCCTCCCTTCCTTCAAACCCCACCATTTCATCGACCTCATTAACCATAACCCCTTCTCTCTCTCCCCTGTCTCTCTCTTCTCCTTCTTCAATTGGCTCTCTTCTGTCCCCACCTTTCGCCACACCCTCCAATCCTACTGCGCTATGGCTAATTTCCTCTGCGCGCATCAAATGTTCGAAGAATCACAATCGATCGTCCGATTTCTCGTCTCCCGCAAAGGTAAGGACTCGGCGGCTTCGATCTTCGCCGCGATTCTTGAAATTACAGATACGCGTTGTTCAAATTTTGTATTTGATGCTTTGATGATTGCGTATTCGGATTCTGGGTTCATCTCCGATGCGATTCAGTGTTTCAGGTTGGTCAGGAAGAGAAATTTTCAAATCCCGTTTCGTGGATGTGAGTACTTACTTGATAAAATGATGAATTCAAACTCCCCTGTTACGATTTGGACGTTTTATCTGGAAATTTTGGATTCTGGGTTCCCACCTAAAGTAAAGTATTTCAACATTTTGATTAATAAGTTCTGTAAACAGGGAAGCATTAGAGATGCCAGGTTGATCTTCGATGAAATTGGGAAGAGGGGTTTTCGTCCCACAGCTGTTAGTTTCAATACCTTGATTAATGGGCTCTGTAAATCCCGAAATTTAGATGAGTGTTTTAGGTTGAAGAAAGCCATGGAAGAGAATAGAATACATCCCGATGTTTACACTTACAGTGTTCTGATTCATGGGTTATGCAAGGAAGGTAAGGTAGACGATGCAGAACAACTGTTCGACGAAATGCGTCAGAGAGGATTGAGGCCAAACGACGTTACATTCACTGCTTTGATTGATGGGCAATGCAGGAGCGGACGAATTGACTCAGCCATGAACACTTATCAGCAAATGTTAGCCATGGGAGTGAAACCAGATTTAGTTATGTATAACACACTCATAAATGGCCTCTGCAAAGTTGGGGATGTTAGTAAAGCTAGGAAGCTAGTTGATGAAATGAAAATGGTGGGGATGAAACCAGATAAAATCACTTACACAACACTCATAGATGGTTACTGCAAAGAGGGAGATTTAGAATCAGCCATGGAGATTAGGAAAGGGATGAATGAAGAAGGGGTTGTTCTTGATAATGTAGCATTCACAGCCATTATTTCAGGTTTGTGTAGAGATGGAAGGGTGATGGATGCAGAGAGGACCTTGAGGGAGATGAAGGAAGCTGGGATGAAACCCGACGACGCGACGTATACTATGGTGATCGACGGGTATTGCAAGAACGGCGATGTTAAGACGGGGTTTAAGCTGCTGAAAGAGATGCAGAGAAATGGGCATAATCCTGGTGTGATAACTTACAATGTGCTTATGAATGGGCTTTGCAAGCAAGGACAGATGAAGAATGCCAATATGCTGTTGGAAGCAATGCTCAACTTAGGAGTAACTCCTGATGACATTACATACAATATTCTGTTGGAAGGGCACTGTAAGAGTGGAAGAGCTGAAGATTTCCTTCACCTCAGAAATGAGAAAGGGCTCGTAGTAGACTACGCGTATTATACTTCTTTAGTCGGTGAATACGATAAATCATTAAAGGATCGTCGAAAGAGGTGA

Coding sequence (CDS)

ATGGCCGCCAATTCCACATTCAAACTCTCCAATTTCTCCAATTCCCTCCCCTCCAAACCTTCCTTCCGCTACTCCACATGGCACTCCCCACTGCCTCCGGCGGCGGCAGCTGATCCTGTACTCGCCGCCGTCTCCACAGCCATCAACAACGTCGAAACAAAGCCTCTCGCCTCTTCTCTTCGGCGGCTCCTCCCTTCCTTCAAACCCCACCATTTCATCGACCTCATTAACCATAACCCCTTCTCTCTCTCCCCTGTCTCTCTCTTCTCCTTCTTCAATTGGCTCTCTTCTGTCCCCACCTTTCGCCACACCCTCCAATCCTACTGCGCTATGGCTAATTTCCTCTGCGCGCATCAAATGTTCGAAGAATCACAATCGATCGTCCGATTTCTCGTCTCCCGCAAAGGTAAGGACTCGGCGGCTTCGATCTTCGCCGCGATTCTTGAAATTACAGATACGCGTTGTTCAAATTTTGTATTTGATGCTTTGATGATTGCGTATTCGGATTCTGGGTTCATCTCCGATGCGATTCAGTGTTTCAGGTTGGTCAGGAAGAGAAATTTTCAAATCCCGTTTCGTGGATGTGAGTACTTACTTGATAAAATGATGAATTCAAACTCCCCTGTTACGATTTGGACGTTTTATCTGGAAATTTTGGATTCTGGGTTCCCACCTAAAGTAAAGTATTTCAACATTTTGATTAATAAGTTCTGTAAACAGGGAAGCATTAGAGATGCCAGGTTGATCTTCGATGAAATTGGGAAGAGGGGTTTTCGTCCCACAGCTGTTAGTTTCAATACCTTGATTAATGGGCTCTGTAAATCCCGAAATTTAGATGAGTGTTTTAGGTTGAAGAAAGCCATGGAAGAGAATAGAATACATCCCGATGTTTACACTTACAGTGTTCTGATTCATGGGTTATGCAAGGAAGGTAAGGTAGACGATGCAGAACAACTGTTCGACGAAATGCGTCAGAGAGGATTGAGGCCAAACGACGTTACATTCACTGCTTTGATTGATGGGCAATGCAGGAGCGGACGAATTGACTCAGCCATGAACACTTATCAGCAAATGTTAGCCATGGGAGTGAAACCAGATTTAGTTATGTATAACACACTCATAAATGGCCTCTGCAAAGTTGGGGATGTTAGTAAAGCTAGGAAGCTAGTTGATGAAATGAAAATGGTGGGGATGAAACCAGATAAAATCACTTACACAACACTCATAGATGGTTACTGCAAAGAGGGAGATTTAGAATCAGCCATGGAGATTAGGAAAGGGATGAATGAAGAAGGGGTTGTTCTTGATAATGTAGCATTCACAGCCATTATTTCAGGTTTGTGTAGAGATGGAAGGGTGATGGATGCAGAGAGGACCTTGAGGGAGATGAAGGAAGCTGGGATGAAACCCGACGACGCGACGTATACTATGGTGATCGACGGGTATTGCAAGAACGGCGATGTTAAGACGGGGTTTAAGCTGCTGAAAGAGATGCAGAGAAATGGGCATAATCCTGGTGTGATAACTTACAATGTGCTTATGAATGGGCTTTGCAAGCAAGGACAGATGAAGAATGCCAATATGCTGTTGGAAGCAATGCTCAACTTAGGAGTAACTCCTGATGACATTACATACAATATTCTGTTGGAAGGGCACTGTAAGAGTGGAAGAGCTGAAGATTTCCTTCACCTCAGAAATGAGAAAGGGCTCGTAGTAGACTACGCGTATTATACTTCTTTAGTCGGTGAATACGATAAATCATTAAAGGATCGTCGAAAGAGGTGA

Protein sequence

MAANSTFKLSNFSNSLPSKPSFRYSTWHSPLPPAAAADPVLAAVSTAINNVETKPLASSLRRLLPSFKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQMFEESQSIVRFLVSRKGKDSAASIFAAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCFRLVRKRNFQIPFRGCEYLLDKMMNSNSPVTIWTFYLEILDSGFPPKVKYFNILINKFCKQGSIRDARLIFDEIGKRGFRPTAVSFNTLINGLCKSRNLDECFRLKKAMEENRIHPDVYTYSVLIHGLCKEGKVDDAEQLFDEMRQRGLRPNDVTFTALIDGQCRSGRIDSAMNTYQQMLAMGVKPDLVMYNTLINGLCKVGDVSKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTAIISGLCRDGRVMDAERTLREMKEAGMKPDDATYTMVIDGYCKNGDVKTGFKLLKEMQRNGHNPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKSGRAEDFLHLRNEKGLVVDYAYYTSLVGEYDKSLKDRRKR

Homology

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BLAST of Carg24241 vs. NCBI nr
Match: XP_022934877.1 (putative pentatricopeptide repeat-containing protein At1g09680 [Cucurbita moschata])

HSP 1 Score: 493.4 bits (1269), Expect = 1.1e-135
Identity = 246/247 (99.60%), Postives = 246/247 (99.60%), Query Frame = 0


Query: 1   MAANSTFKLSNFSNSLPSKPSFRYSTWHSPLPPAAAADPVLAAVSTAINNVETKPLASSL 60
           MAANSTFKLSNFSNSLPSKPSFRYSTWHSPLPPAAAADPVLAAVSTAINNVETKPLASSL
Sbjct: 1   MAANSTFKLSNFSNSLPSKPSFRYSTWHSPLPPAAAADPVLAAVSTAINNVETKPLASSL 60

Query: 61  RRLLPSFKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQM 120
           RRLLPSFKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLC HQM
Sbjct: 61  RRLLPSFKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCVHQM 120

Query: 121 FEESQSIVRFLVSRKGKDSAASIFAAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCF 180
           FEESQSIVRFLVSRKGKDSAASIFAAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCF
Sbjct: 121 FEESQSIVRFLVSRKGKDSAASIFAAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCF 180

Query: 181 RLVRKRNFQIPFRGCEYLLDKMMNSNSPVTIWTFYLEILDSGFPPKVKYFNILINKFCKQ 240
           RLVRKRNFQIPFRGCEYLLDKMMNSNSPVTIWTFYLEILDSGFPPKVKYFNILINKFCKQ
Sbjct: 181 RLVRKRNFQIPFRGCEYLLDKMMNSNSPVTIWTFYLEILDSGFPPKVKYFNILINKFCKQ 240

Query: 241 GSIRDAR 248
           GSIRDAR
Sbjct: 241 GSIRDAR 247

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BLAST of Carg24241 vs. NCBI nr
Match: XP_023526542.1 (putative pentatricopeptide repeat-containing protein At1g09680 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 493.4 bits (1269), Expect = 1.1e-135
Identity = 246/247 (99.60%), Postives = 246/247 (99.60%), Query Frame = 0


Query: 1   MAANSTFKLSNFSNSLPSKPSFRYSTWHSPLPPAAAADPVLAAVSTAINNVETKPLASSL 60
           MAANSTFKLSNFSNSLPSKPSFRYSTWHSPLPPAAA DPVLAAVSTAINNVETKPLASSL
Sbjct: 28  MAANSTFKLSNFSNSLPSKPSFRYSTWHSPLPPAAAGDPVLAAVSTAINNVETKPLASSL 87

Query: 61  RRLLPSFKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQM 120
           RRLLPSFKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQM
Sbjct: 88  RRLLPSFKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQM 147

Query: 121 FEESQSIVRFLVSRKGKDSAASIFAAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCF 180
           FEESQSIVRFLVSRKGKDSAASIFAAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCF
Sbjct: 148 FEESQSIVRFLVSRKGKDSAASIFAAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCF 207

Query: 181 RLVRKRNFQIPFRGCEYLLDKMMNSNSPVTIWTFYLEILDSGFPPKVKYFNILINKFCKQ 240
           RLVRKRNFQIPFRGCEYLLDKMMNSNSPVTIWTFYLEILDSGFPPKVKYFNILINKFCKQ
Sbjct: 208 RLVRKRNFQIPFRGCEYLLDKMMNSNSPVTIWTFYLEILDSGFPPKVKYFNILINKFCKQ 267

Query: 241 GSIRDAR 248
           GSIRDAR
Sbjct: 268 GSIRDAR 274

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BLAST of Carg24241 vs. NCBI nr
Match: XP_022983327.1 (putative pentatricopeptide repeat-containing protein At1g09680 [Cucurbita maxima])

HSP 1 Score: 469.5 bits (1207), Expect = 1.6e-128
Identity = 235/247 (95.14%), Postives = 237/247 (95.95%), Query Frame = 0


Query: 1   MAANSTFKLSNFSNSLPSKPSFRYSTWHSPLPPAAAADPVLAAVSTAINNVETKPLASSL 60
           MAANSTFKLSNFS+SLPSKPSFRYSTWHSP         VLAAVSTAINNVETKPLASSL
Sbjct: 1   MAANSTFKLSNFSSSLPSKPSFRYSTWHSPXXXXXXXXXVLAAVSTAINNVETKPLASSL 60

Query: 61  RRLLPSFKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQM 120
           RRLLPSFKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLC HQM
Sbjct: 61  RRLLPSFKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCTHQM 120

Query: 121 FEESQSIVRFLVSRKGKDSAASIFAAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCF 180
           FEESQSI+RFLVSRKGKDSAASIFAAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCF
Sbjct: 121 FEESQSIIRFLVSRKGKDSAASIFAAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCF 180

Query: 181 RLVRKRNFQIPFRGCEYLLDKMMNSNSPVTIWTFYLEILDSGFPPKVKYFNILINKFCKQ 240
           RLVRKRNFQIPFRGCEYLLDKMMNSNSPVTIWTFYLEILDSGFPPKVKYFNILINKFCKQ
Sbjct: 181 RLVRKRNFQIPFRGCEYLLDKMMNSNSPVTIWTFYLEILDSGFPPKVKYFNILINKFCKQ 240

Query: 241 GSIRDAR 248
           GSIRDAR
Sbjct: 241 GSIRDAR 247

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BLAST of Carg24241 vs. NCBI nr
Match: XP_008457121.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Cucumis melo])

HSP 1 Score: 399.1 bits (1024), Expect = 2.7e-107
Identity = 203/232 (87.50%), Postives = 212/232 (91.38%), Query Frame = 0


Query: 1   MAANSTFKLSNFSNSLPSKPSFRYSTWHSPLPPAAAADPVLAAVSTAINNVETKPLASSL 60
           MA NS+FKL   S SL SKPSFRYSTWHSP PPAA ADP+LAAVSTAINN +TKPLASSL
Sbjct: 1   MANNSSFKL---SISL-SKPSFRYSTWHSPPPPAAVADPLLAAVSTAINNAQTKPLASSL 60

Query: 61  RRLLPSFKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQM 120
           RRLLPSFKPHHFIDLINHNPFSLSP+SLFSFFNWLSS+PTFRHT QSYCAMANFL AHQM
Sbjct: 61  RRLLPSFKPHHFIDLINHNPFSLSPLSLFSFFNWLSSMPTFRHTSQSYCAMANFLSAHQM 120

Query: 121 FEESQSIVRFLVSRKGKDSAASIFAAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCF 180
           FEE QSI+RFLVSRKGKDSAAS+FAAIL+I  TRCSNFVFDALMIAY DSGF+SDAIQCF
Sbjct: 121 FEECQSIIRFLVSRKGKDSAASVFAAILDIAGTRCSNFVFDALMIAYWDSGFVSDAIQCF 180

Query: 181 RLVRKRNFQIPFRGCEYLLDKMMNSNSPVTIWTFYLEILDSGFPPKVKYFNI 233
           RLVRK NFQIPF GC YLLDKMMNSNSPVTIWTFY EILDSGFPP VKYFNI
Sbjct: 181 RLVRKSNFQIPFHGCGYLLDKMMNSNSPVTIWTFYSEILDSGFPPNVKYFNI 228

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BLAST of Carg24241 vs. NCBI nr
Match: KGN57460.1 (hypothetical protein Csa_3G188330 [Cucumis sativus])

HSP 1 Score: 389.8 bits (1000), Expect = 1.6e-104
Identity = 199/239 (83.26%), Postives = 211/239 (88.28%), Query Frame = 0


Query: 1   MAANSTFKLSNFSNSLPSKPSFRYSTWHSPLPPAAAADPVLAAVSTAINNVETKPLASSL 60
           M  NS+FK    S SL SKPSF YSTWHSP P AA ADPVLAAVSTAINN +TKPLASSL
Sbjct: 15  MPNNSSFK---HSISL-SKPSFLYSTWHSPPPLAALADPVLAAVSTAINNAQTKPLASSL 74

Query: 61  RRLLPSFKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQM 120
           RRLLPSFKPHHFIDLIN NPFSLSP SLFSFFNWLSS+PTFRHT QSYCAMANFL AHQM
Sbjct: 75  RRLLPSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCAMANFLSAHQM 134

Query: 121 FEESQSIVRFLVSRKGKDSAASIFAAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCF 180
           F+E QSI+RFLVSRKGKDSAAS+FAAIL+   TRCSNFVFDALMIAY DSGF+SDAIQCF
Sbjct: 135 FQECQSIIRFLVSRKGKDSAASVFAAILDTAGTRCSNFVFDALMIAYWDSGFVSDAIQCF 194

Query: 181 RLVRKRNFQIPFRGCEYLLDKMMNSNSPVTIWTFYLEILDSGFPPKVKYFNILINKFCK 240
           RLVR  NFQIPF GC YLLDKM+NSNSPVTIWTFY EIL+ GFPPKV+Y+NILINKFCK
Sbjct: 195 RLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCK 249

HSP 2 Score: 63.2 bits (152), Expect = 3.5e-06
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 560 DFLHLRNEKGLVVDYAYYTSLVGEYDKSLKDRRKR 595
           D L LRNEKGL+VDYAYYTSLV EY+KSLKDR+KR
Sbjct: 495 DLLKLRNEKGLIVDYAYYTSLVSEYNKSLKDRQKR 529

[Close]

BLAST of Carg24241 vs. TAIR10
Match: AT1G09680.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 235.7 bits (600), Expect = 7.2e-62
Identity = 124/241 (51.45%), Postives = 165/241 (68.46%), Query Frame = 0


Query: 18  SKPSFRYSTWHSPLPPAAA---ADPVLAAVSTAI-NNVETKPL-------ASSLRRLLPS 77
           S+ SF  STW+S    +AA    DPVL  +S AI ++ +  PL         S+R++LPS
Sbjct: 20  SRASFLLSTWYSQESVSAADNDDDPVLVKLSVAIRDSYKDPPLEFSSFTDCPSIRKVLPS 79

Query: 78  FKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQMFEESQS 137
              HH +DLINHNP SL   S+F+FF ++SS P FR T+++Y  +A FL  H+MF E+QS
Sbjct: 80  LSVHHVVDLINHNPLSLPQRSIFAFFKFISSQPGFRFTVETYFVLARFLAVHEMFTEAQS 139

Query: 138 IVRFLVSRKGKDSAASIFAAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCFRLVRKR 197
           ++  +VSRKGK+SA+S+F +++E+  T    F+ DALMI Y+D GFI DAIQCFRL RK 
Sbjct: 140 LIELVVSRKGKNSASSVFISLVEMRVTPMCGFLVDALMITYTDLGFIPDAIQCFRLSRKH 199

Query: 198 NFQIPFRGCEYLLDKMMNSNSPVTIWTFYLEILDSGFPPKVKYFNILINKFCKQGSIRDA 248
            F +P RGC  LLD+MM  N   TIW FY+EILD+GFP  V  FNIL+NKFCK+G+I DA
Sbjct: 200 RFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDA 259

[Close]

BLAST of Carg24241 vs. TAIR10
Match: AT5G38730.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-08
Identity = 36/129 (27.91%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 85  PVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQMFEESQSIVRFLVSRKGKDSAASIF 144
           P   +SFF W  S+P+ +H+LQS   M   L  H+ F+ +  ++  L  R+   S   + 
Sbjct: 60  PSLSWSFFIWTDSLPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPLVLR 119

Query: 145 AAILEIT-DTRCSNFVFDALMIAYSDSGFISDAIQCFRLVRKRNFQIPFRGCEYLLDKMM 204
           + +  ++ D    + VF  LMI Y+ +G I+D+I  F  +R    +   + C  LL+ ++
Sbjct: 120 SLVGGVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLV 179

Query: 205 NSNSPVTIW 213
                 T+W
Sbjct: 180 KQRLTDTVW 188

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BLAST of Carg24241 vs. TAIR10
Match: AT2G02150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 7.8e-08
Identity = 34/118 (28.81%), Postives = 59/118 (50.00%), Query Frame = 0


Query: 85  PVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQMFEESQSIVRFLVSRKGKDSAASIF 144
           P   F FF W  +   F+H+++SYC +A+ L   +M+ ++ S+++ +V  K   +   +F
Sbjct: 122 PKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSK---ADCDVF 181

Query: 145 AAILEITDTRCSNF-VFDALMIAYSDSGFISDAIQCFRLVRKRNFQIPFRGCEYLLDK 202
             +    +     F VFDAL     D G + +AIQCF  +++       R C  LL +
Sbjct: 182 DVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHR 236

[Close]

BLAST of Carg24241 vs. TAIR10
Match: AT1G77340.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 45.4 bits (106), Expect = 1.4e-04
Identity = 24/86 (27.91%), Postives = 44/86 (51.16%), Query Frame = 0


Query: 48  INNVETKPLASSLRRL-LPSFKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQ 107
           +N + TK    S+ ++  P + P H   L + N   L P +  SF +W+S +P F+H + 
Sbjct: 5   LNCLRTKLAEQSISKISYPFYTPSHVSSLFSLN---LDPQTALSFSDWISRIPNFKHNVT 64

Query: 108 SYCAMANFLCAHQMFEESQSIVRFLV 133
           SY ++   LC+ ++  E   I   ++
Sbjct: 65  SYASLVTLLCSQEIPYEVPKITILMI 87

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BLAST of Carg24241 vs. Swiss-Prot
Match: sp|O04491|PPR26_ARATH (Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana OX=3702 GN=At1g09680 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.3e-60
Identity = 124/241 (51.45%), Postives = 165/241 (68.46%), Query Frame = 0


Query: 18  SKPSFRYSTWHSPLPPAAA---ADPVLAAVSTAI-NNVETKPL-------ASSLRRLLPS 77
           S+ SF  STW+S    +AA    DPVL  +S AI ++ +  PL         S+R++LPS
Sbjct: 20  SRASFLLSTWYSQESVSAADNDDDPVLVKLSVAIRDSYKDPPLEFSSFTDCPSIRKVLPS 79

Query: 78  FKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQMFEESQS 137
              HH +DLINHNP SL   S+F+FF ++SS P FR T+++Y  +A FL  H+MF E+QS
Sbjct: 80  LSVHHVVDLINHNPLSLPQRSIFAFFKFISSQPGFRFTVETYFVLARFLAVHEMFTEAQS 139

Query: 138 IVRFLVSRKGKDSAASIFAAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCFRLVRKR 197
           ++  +VSRKGK+SA+S+F +++E+  T    F+ DALMI Y+D GFI DAIQCFRL RK 
Sbjct: 140 LIELVVSRKGKNSASSVFISLVEMRVTPMCGFLVDALMITYTDLGFIPDAIQCFRLSRKH 199

Query: 198 NFQIPFRGCEYLLDKMMNSNSPVTIWTFYLEILDSGFPPKVKYFNILINKFCKQGSIRDA 248
            F +P RGC  LLD+MM  N   TIW FY+EILD+GFP  V  FNIL+NKFCK+G+I DA
Sbjct: 200 RFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDA 259

[Close]

BLAST of Carg24241 vs. Swiss-Prot
Match: sp|Q9FKR3|PP404_ARATH (Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana OX=3702 GN=At5g38730 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.7e-07
Identity = 36/129 (27.91%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 85  PVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQMFEESQSIVRFLVSRKGKDSAASIF 144
           P   +SFF W  S+P+ +H+LQS   M   L  H+ F+ +  ++  L  R+   S   + 
Sbjct: 60  PSLSWSFFIWTDSLPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPLVLR 119

Query: 145 AAILEIT-DTRCSNFVFDALMIAYSDSGFISDAIQCFRLVRKRNFQIPFRGCEYLLDKMM 204
           + +  ++ D    + VF  LMI Y+ +G I+D+I  F  +R    +   + C  LL+ ++
Sbjct: 120 SLVGGVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLV 179

Query: 205 NSNSPVTIW 213
                 T+W
Sbjct: 180 KQRLTDTVW 188

[Close]

BLAST of Carg24241 vs. Swiss-Prot
Match: sp|P0C894|PP143_ARATH (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana OX=3702 GN=At2g02150 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-06
Identity = 34/118 (28.81%), Postives = 59/118 (50.00%), Query Frame = 0


Query: 85  PVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQMFEESQSIVRFLVSRKGKDSAASIF 144
           P   F FF W  +   F+H+++SYC +A+ L   +M+ ++ S+++ +V  K   +   +F
Sbjct: 122 PKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSK---ADCDVF 181

Query: 145 AAILEITDTRCSNF-VFDALMIAYSDSGFISDAIQCFRLVRKRNFQIPFRGCEYLLDK 202
             +    +     F VFDAL     D G + +AIQCF  +++       R C  LL +
Sbjct: 182 DVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHR 236

[Close]

BLAST of Carg24241 vs. TrEMBL
Match: tr|A0A1S3C629|A0A1S3C629_CUCME (putative pentatricopeptide repeat-containing protein At1g09680 OS=Cucumis melo OX=3656 GN=LOC103496868 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.8e-107
Identity = 203/232 (87.50%), Postives = 212/232 (91.38%), Query Frame = 0


Query: 1   MAANSTFKLSNFSNSLPSKPSFRYSTWHSPLPPAAAADPVLAAVSTAINNVETKPLASSL 60
           MA NS+FKL   S SL SKPSFRYSTWHSP PPAA ADP+LAAVSTAINN +TKPLASSL
Sbjct: 1   MANNSSFKL---SISL-SKPSFRYSTWHSPPPPAAVADPLLAAVSTAINNAQTKPLASSL 60

Query: 61  RRLLPSFKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQM 120
           RRLLPSFKPHHFIDLINHNPFSLSP+SLFSFFNWLSS+PTFRHT QSYCAMANFL AHQM
Sbjct: 61  RRLLPSFKPHHFIDLINHNPFSLSPLSLFSFFNWLSSMPTFRHTSQSYCAMANFLSAHQM 120

Query: 121 FEESQSIVRFLVSRKGKDSAASIFAAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCF 180
           FEE QSI+RFLVSRKGKDSAAS+FAAIL+I  TRCSNFVFDALMIAY DSGF+SDAIQCF
Sbjct: 121 FEECQSIIRFLVSRKGKDSAASVFAAILDIAGTRCSNFVFDALMIAYWDSGFVSDAIQCF 180

Query: 181 RLVRKRNFQIPFRGCEYLLDKMMNSNSPVTIWTFYLEILDSGFPPKVKYFNI 233
           RLVRK NFQIPF GC YLLDKMMNSNSPVTIWTFY EILDSGFPP VKYFNI
Sbjct: 181 RLVRKSNFQIPFHGCGYLLDKMMNSNSPVTIWTFYSEILDSGFPPNVKYFNI 228

[Close]

BLAST of Carg24241 vs. TrEMBL
Match: tr|A0A0A0L668|A0A0A0L668_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G188330 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 1.1e-104
Identity = 199/239 (83.26%), Postives = 211/239 (88.28%), Query Frame = 0


Query: 1   MAANSTFKLSNFSNSLPSKPSFRYSTWHSPLPPAAAADPVLAAVSTAINNVETKPLASSL 60
           M  NS+FK    S SL SKPSF YSTWHSP P AA ADPVLAAVSTAINN +TKPLASSL
Sbjct: 15  MPNNSSFK---HSISL-SKPSFLYSTWHSPPPLAALADPVLAAVSTAINNAQTKPLASSL 74

Query: 61  RRLLPSFKPHHFIDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQM 120
           RRLLPSFKPHHFIDLIN NPFSLSP SLFSFFNWLSS+PTFRHT QSYCAMANFL AHQM
Sbjct: 75  RRLLPSFKPHHFIDLINQNPFSLSPSSLFSFFNWLSSIPTFRHTSQSYCAMANFLSAHQM 134

Query: 121 FEESQSIVRFLVSRKGKDSAASIFAAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCF 180
           F+E QSI+RFLVSRKGKDSAAS+FAAIL+   TRCSNFVFDALMIAY DSGF+SDAIQCF
Sbjct: 135 FQECQSIIRFLVSRKGKDSAASVFAAILDTAGTRCSNFVFDALMIAYWDSGFVSDAIQCF 194

Query: 181 RLVRKRNFQIPFRGCEYLLDKMMNSNSPVTIWTFYLEILDSGFPPKVKYFNILINKFCK 240
           RLVR  NFQIPF GC YLLDKM+NSNSPVTIWTFY EIL+ GFPPKV+Y+NILINKFCK
Sbjct: 195 RLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCK 249

HSP 2 Score: 63.2 bits (152), Expect = 2.3e-06
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 560 DFLHLRNEKGLVVDYAYYTSLVGEYDKSLKDRRKR 595
           D L LRNEKGL+VDYAYYTSLV EY+KSLKDR+KR
Sbjct: 495 DLLKLRNEKGLIVDYAYYTSLVSEYNKSLKDRQKR 529

[Close]

BLAST of Carg24241 vs. TrEMBL
Match: tr|M5XHR3|M5XHR3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G166000 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.3e-70
Identity = 137/225 (60.89%), Postives = 171/225 (76.00%), Query Frame = 0


Query: 25  STWHSPLPPAAAADPVLAAVSTAINNV--ETKPLASSLRRLLPSFKPHHFIDLINHNPFS 84
           + W++  P     DP L+A+S AI      ++PL SSLR+LLPS      I+LIN NP S
Sbjct: 34  TAWYNQPPTPHNEDPKLSAISDAIKTTTQNSQPLDSSLRKLLPSLTARDVINLINLNPHS 93

Query: 85  LSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQMFEESQSIVRFLVSRKGKDSAAS 144
           LSP+SL SFFNWLSS PTFRH +QSYC MA+FLCAHQM+ ++QS++R +VSRKGK++A+S
Sbjct: 94  LSPLSLLSFFNWLSSHPTFRHNIQSYCTMAHFLCAHQMYPQAQSLLRIVVSRKGKETASS 153

Query: 145 IFAAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCFRLVRKRNFQIPFRGCEYLLDKM 204
           +FA+ILE   T  SN+VFDALM AY D GF+SDA QCFRL+RK NF+IPF  C  LLDKM
Sbjct: 154 VFASILETRGTHQSNYVFDALMNAYVDCGFVSDACQCFRLLRKHNFRIPFHACGCLLDKM 213

Query: 205 MNSNSPVTIWTFYLEILDSGFPPKVKYFNILINKFCKQGSIRDAR 248
           +  NSPV  W FYLEILDSGFPPKV  FN+L++K CK+G IR+A+
Sbjct: 214 LKLNSPVVAWGFYLEILDSGFPPKVYNFNVLMHKLCKEGEIREAQ 258

[Close]

BLAST of Carg24241 vs. TrEMBL
Match: tr|A0A2P5EU75|A0A2P5EU75_9ROSA (Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_151670 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 6.2e-68
Identity = 131/201 (65.17%), Postives = 160/201 (79.60%), Query Frame = 0


Query: 25  STWHSPLPPAAAADPVLAAVSTAINNVETKPLASSLRRLLPSFKPHHFIDLINHNPFSLS 84
           +TW+SP  P    DPVL A+S AINN +TKPL SSL+ LLPS    H I+LIN NP SLS
Sbjct: 22  ATWYSPPLPPRHGDPVLLAISEAINNSQTKPLESSLKGLLPSLTARHLINLINFNPHSLS 81

Query: 85  PVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQMFEESQSIVRFLVSRKGKDSAASIF 144
           P+SL SFFNWL++ PTFRHTL SYCAMA+FLCA ++   +QS++RFLVSRKGKDSA+S+F
Sbjct: 82  PLSLLSFFNWLTTQPTFRHTLHSYCAMAHFLCASRLDPHAQSLLRFLVSRKGKDSASSVF 141

Query: 145 AAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCFRLVRKRNFQIPFRGCEYLLDKMMN 204
           AAI+E   T  SN VFD+L++AY+DSGF+SDAIQCFRLV K N+++P  GCEYLL KMM 
Sbjct: 142 AAIVETRGTYQSNAVFDSLIMAYADSGFLSDAIQCFRLVAKHNYRVPCHGCEYLLGKMMK 201

Query: 205 SNSPVTIWTFYLEILDSGFPP 226
           SNSP ++W FY EILD G+PP
Sbjct: 202 SNSPGSVWLFYSEILDCGYPP 222

[Close]

BLAST of Carg24241 vs. TrEMBL
Match: tr|A0A0B0N0W6|A0A0B0N0W6_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_25233 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 5.8e-66
Identity = 136/235 (57.87%), Postives = 171/235 (72.77%), Query Frame = 0


Query: 13  SNSLPSKPSFRYSTWHSPLPPAAAADPVLAAVSTAINNVETKPLASSLRRLLPSFKPHHF 72
           S +L    S   S W+SP P     +P+L  +S AI N  TKPL  SL +LLPS  P H 
Sbjct: 3   SQTLKRSISRSPSAWYSP-PFPHHHNPILTTLSHAIGNSPTKPLHVSLSKLLPSLTPSHV 62

Query: 73  IDLINHNPFSLSPVSLFSFFNWLSSVPTFRHTLQSYCAMANFLCAHQMFEESQSIVRFLV 132
           +DLI  NP+SLSP SLFSFF +LSS PTFRHTL SY AM++FL AH M  +++ ++ FLV
Sbjct: 63  VDLIVLNPYSLSPHSLFSFFKFLSSHPTFRHTLHSYSAMSHFLVAHNMLPQARFLLNFLV 122

Query: 133 SRKGKDSAASIFAAILEITDTRCSNFVFDALMIAYSDSGFISDAIQCFRLVRKRNFQIPF 192
           SRKGKDSA+SIFA++LE   T   +FVFD+LMIAY+D GF+SDAIQCFRLVRK   ++PF
Sbjct: 123 SRKGKDSASSIFASVLETKGTYQCDFVFDSLMIAYTDLGFVSDAIQCFRLVRKHKLRVPF 182

Query: 193 RGCEYLLDKMMNSNSPVTIWTFYLEILDSGFPPKVKYFNILINKFCKQGSIRDAR 248
           RGC+YL D+MM  +SP+    FY+EILD GFPP V  FNIL+NK C++G I+DA+
Sbjct: 183 RGCKYLFDRMMKISSPIVSLGFYMEILDYGFPPNVYSFNILMNKLCREGLIKDAQ 236

The following BLAST results are available for this feature:

BLAST of Carg24241 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934877.1	1.1e-135	99.60	putative pentatricopeptide repeat-containing protein At1g09680 [Cucurbita moscha...	[more]
XP_023526542.1	1.1e-135	99.60	putative pentatricopeptide repeat-containing protein At1g09680 [Cucurbita pepo s...	[more]
XP_022983327.1	1.6e-128	95.14	putative pentatricopeptide repeat-containing protein At1g09680 [Cucurbita maxima...	[more]
XP_008457121.1	2.7e-107	87.50	PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Cucum...	[more]
KGN57460.1	1.6e-104	83.26	hypothetical protein Csa_3G188330 [Cucumis sativus]	[more]

BLAST of Carg24241 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09680.1	7.2e-62	51.45	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G38730.1	2.1e-08	27.91	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G02150.1	7.8e-08	28.81	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G77340.1	1.4e-04	27.91	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Carg24241 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O04491\|PPR26_ARATH	1.3e-60	51.45	Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis th...	[more]
sp\|Q9FKR3\|PP404_ARATH	3.7e-07	27.91	Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana OX...	[more]
sp\|P0C894\|PP143_ARATH	1.4e-06	28.81	Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis th...	[more]

BLAST of Carg24241 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C629\|A0A1S3C629_CUCME	1.8e-107	87.50	putative pentatricopeptide repeat-containing protein At1g09680 OS=Cucumis melo O...	[more]
tr\|A0A0A0L668\|A0A0A0L668_CUCSA	1.1e-104	83.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G188330 PE=4 SV=1	[more]
tr\|M5XHR3\|M5XHR3_PRUPE	1.3e-70	60.89	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G166000 PE=4 SV=1	[more]
tr\|A0A2P5EU75\|A0A2P5EU75_9ROSA	6.2e-68	65.17	Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_151670 PE=4 ...	[more]
tr\|A0A0B0N0W6\|A0A0B0N0W6_GOSAR	5.8e-66	57.87	Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_25233 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24241-RA	Carg24241-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 453..593 e-value: 9.3E-39 score: 135.8 coord: 237..360 e-value: 3.4E-40 score: 140.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 361..452 e-value: 6.4E-32 score: 112.4 coord: 56..209 e-value: 2.1E-6 score: 29.1
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 127..187 coord: 224..423
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 230..258 e-value: 9.5E-4 score: 19.2 coord: 159..188 e-value: 1.0 score: 9.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 365..414 e-value: 3.1E-19 score: 68.8 coord: 505..554 e-value: 9.1E-17 score: 60.9 coord: 436..484 e-value: 7.6E-16 score: 57.9 coord: 260..309 e-value: 1.6E-17 score: 63.3
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 326..358 e-value: 4.9E-9 score: 35.6
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 474..506 e-value: 3.3E-10 score: 37.5 coord: 403..436 e-value: 1.2E-8 score: 32.6 coord: 543..565 e-value: 0.0031 score: 15.6 coord: 298..331 e-value: 1.3E-12 score: 45.0 coord: 508..541 e-value: 1.8E-7 score: 28.9 coord: 438..471 e-value: 7.3E-9 score: 33.3 coord: 333..366 e-value: 4.8E-8 score: 30.7 coord: 263..297 e-value: 1.6E-8 score: 32.2 coord: 368..401 e-value: 9.8E-11 score: 39.2 coord: 230..261 e-value: 3.1E-6 score: 25.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 436..470 score: 12.759
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 506..540 score: 11.904
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 541..571 score: 6.95
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 401..435 score: 12.496
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 261..295 score: 11.323
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 331..365 score: 12.485
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 104..138 score: 5.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 471..505 score: 13.088
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 366..400 score: 13.493
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 156..190 score: 7.892
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 226..260 score: 10.731
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 296..330 score: 15.806
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 16..594
None	No IPR available	PANTHER	PTHR24015:SF923	SUBFAMILY NOT NAMED	coord: 16..594

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24241	Cla013136	Watermelon (97103) v1	carwmB0166
Carg24241	Csa3G188330	Cucumber (Chinese Long) v2	carcuB0196
Carg24241	ClCG05G010640	Watermelon (Charleston Gray)	carwcgB0168
Carg24241	CSPI03G17770	Wild cucumber (PI 183967)	carcpiB0203
Carg24241	Cucsa.108580	Cucumber (Gy14) v1	carcgyB0216
Carg24241	CmaCh14G008690	Cucurbita maxima (Rimu)	carcmaB0240
Carg24241	CmoCh14G008860	Cucurbita moschata (Rifu)	carcmoB0248
Carg24241	Lsi05G002720	Bottle gourd (USVL1VR-Ls)	carlsiB158
Carg24241	Cp4.1LG03g05680	Cucurbita pepo (Zucchini)	carcpeB0257
Carg24241	CsGy3G017740	Cucumber (Gy14) v2	carcgybB0190
Carg24241	MELO3C032020.2	Melon (DHL92) v3.6.1	carmedB0185
Carg24241	CsaV3_3G017850	Cucumber (Chinese Long) v3	carcucB0203
Carg24241	Cla97C05G092980	Watermelon (97103) v2	carwmbB0181
Carg24241	Bhi01G001315	Wax gourd	carwgoB0227

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24241	Silver-seed gourd	carcarB213
Carg24241	Cucurbita maxima (Rimu)	carcmaB0241
Carg24241	Cucurbita moschata (Rifu)	carcmoB0249
Carg24241	Cucurbita pepo (Zucchini)	carcpeB0256
Carg24241	Melon (DHL92) v3.5.1	carmeB0181