CsGy3G015470 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G015470
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionLate embryogenesis abundant protein D-29
LocationChr3 : 11449013 .. 11450650 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAACTTTCTTCTGTACTCTATTCTTATTTCTCCTAATTGTCTAACACTTTTCATTTCCATTCACTTTCAAATTCATCAATATAATCCAATGCCTTCTTCTTCTTCTTCGATTCGAGTTTACCGCCGCCGGATTTCTCTACCGGCAGTGGCAATGGCGGTGACGGTGGTGTTGCTGGTTTTTATGGTGAGTATATGCTGGAGCGGGAGTGTGGGACATATGCCGTCCACGACGGAGGAGGCTCGAGATTACCAAGAAATGAAGAGCAAAGCGGAGGAGAAAGATCAGACGGGGGAGACGTGGACGGAATGGGCGAAAGAGAAAATCACCGGGGGACTTGGATTGAAGAGTGAAAGGCAGGAAGATGATGAGGGTGGCGTTAAGAAGGTTACTGATTTCACTTCCGATTCTGCTAAAAAGGCCAAAGACAAAATACAGAACGTCGCTTCAGGTTTTAATATATATATTTTTTTAGCCTAAATTGTATTATTAATTATTTTAATTATTTTGCAAAATTATTTAAAATGCTTTTAAATATAACAAAGTATGGGGAGATAATTAACAAAATCAGTGTATTTTCTAAATCCATTTTTTCTAAAATGTAGTCTTTATTTTTATGGTAAAAAAATAAAATGCCAACAAAATATAATATATATACAAAAAAAAAAAAAACCCATTTTAGTCCTTAAATAAACAAATATTGCTCAATTATACTATTTTGCGGAACATTAGATTTTCTATAGAGATTTTAGTTTTTATGAATATCAAATTTTATTAGTTGAACTTTTTAAAAGGAAATTATTTCGTTTCGTAAAGTTACACATAAATATTTGTTTATGCTGACGACAGGAGTGGGACAGTACGGCGCTGAAAAGGCCGAAGAAGTGAAAGGCATGGCGGCGGAGAAGGCTAGTGAGGCCAAAGATAAGGCAGCGAAACTGGGAACAGTAGCTGAGAAAACGACGGAAGCGGCGGACAAGGCAAAAGAAAAGGCACAAAATGCGGCAAAAGGAACCAAAGAGAAAGTTACCTCCCTAAAAAACAAAGCAGAAGAAAGCTCGGGTGAGGCGACTGAGAAAACGAAGGAAGCGGCCAATGAGGCGAGGAAAAAAACAGAAGAAACAGCAGAGGAGGCGAAGGAAAGAGCCTCGACGGGAGCAAGAGAGGCGGAGGAGAGAGCAGGAGAGATGAAGGAGAAGGCGAAAGTGAAGGGGAAGGAAGCGAAGGAGAGAGCGGAGGAGGAGGCAGGGAGGGCAGAGGAGATAGCGGATAAGGGGAAGAGATGGGCAAAGGAAGGGTTTGAGGCTGCGAAGGAGAAGGCAGAGGAGGTGGTGGGAGCGGCGAAGGAGAAGATAGGGGAGCAATACGAGGCGGCGAAGAAGAAGTCGCAGAGGATTAAAGACGACGTGGTTCGGTCCGAGGTGGAAGACGAGCTTTAAACAACACTCGGGCGCGGGGTACGTAGTTTTGTGTGTTCATATTATGTTAATTCTGAGGACGATGTGAGAGGCAGCGTCCTTCGTTCGAATGAAATGATATGTTTTCGAGGGAAGTCGTTTTACGTTGGTTATGATGTGAGTGTGTGTTTGTGTATATAATGAAATCATAAGAAAGAGTTTGTTGTTCAAATCGTTTTTGG

mRNA sequence

CCAACTTTCTTCTGTACTCTATTCTTATTTCTCCTAATTGTCTAACACTTTTCATTTCCATTCACTTTCAAATTCATCAATATAATCCAATGCCTTCTTCTTCTTCTTCGATTCGAGTTTACCGCCGCCGGATTTCTCTACCGGCAGTGGCAATGGCGGTGACGGTGGTGTTGCTGGTTTTTATGGTGAGTATATGCTGGAGCGGGAGTGTGGGACATATGCCGTCCACGACGGAGGAGGCTCGAGATTACCAAGAAATGAAGAGCAAAGCGGAGGAGAAAGATCAGACGGGGGAGACGTGGACGGAATGGGCGAAAGAGAAAATCACCGGGGGACTTGGATTGAAGAGTGAAAGGCAGGAAGATGATGAGGGTGGCGTTAAGAAGGTTACTGATTTCACTTCCGATTCTGCTAAAAAGGCCAAAGACAAAATACAGAACGTCGCTTCAGGAGTGGGACAGTACGGCGCTGAAAAGGCCGAAGAAGTGAAAGGCATGGCGGCGGAGAAGGCTAGTGAGGCCAAAGATAAGGCAGCGAAACTGGGAACAGTAGCTGAGAAAACGACGGAAGCGGCGGACAAGGCAAAAGAAAAGGCACAAAATGCGGCAAAAGGAACCAAAGAGAAAGTTACCTCCCTAAAAAACAAAGCAGAAGAAAGCTCGGGTGAGGCGACTGAGAAAACGAAGGAAGCGGCCAATGAGGCGAGGAAAAAAACAGAAGAAACAGCAGAGGAGGCGAAGGAAAGAGCCTCGACGGGAGCAAGAGAGGCGGAGGAGAGAGCAGGAGAGATGAAGGAGAAGGCGAAAGTGAAGGGGAAGGAAGCGAAGGAGAGAGCGGAGGAGGAGGCAGGGAGGGCAGAGGAGATAGCGGATAAGGGGAAGAGATGGGCAAAGGAAGGGTTTGAGGCTGCGAAGGAGAAGGCAGAGGAGGTGGTGGGAGCGGCGAAGGAGAAGATAGGGGAGCAATACGAGGCGGCGAAGAAGAAGTCGCAGAGGATTAAAGACGACGTGGTTCGGTCCGAGGTGGAAGACGAGCTTTAAACAACACTCGGGCGCGGGGTACGTAGTTTTGTGTGTTCATATTATGTTAATTCTGAGGACGATGTGAGAGGCAGCGTCCTTCGTTCGAATGAAATGATATGTTTTCGAGGGAAGTCGTTTTACGTTGGTTATGATGTGAGTGTGTGTTTGTGTATATAATGAAATCATAAGAAAGAGTTTGTTGTTCAAATCGTTTTTGG

Coding sequence (CDS)

ATGCCTTCTTCTTCTTCTTCGATTCGAGTTTACCGCCGCCGGATTTCTCTACCGGCAGTGGCAATGGCGGTGACGGTGGTGTTGCTGGTTTTTATGGTGAGTATATGCTGGAGCGGGAGTGTGGGACATATGCCGTCCACGACGGAGGAGGCTCGAGATTACCAAGAAATGAAGAGCAAAGCGGAGGAGAAAGATCAGACGGGGGAGACGTGGACGGAATGGGCGAAAGAGAAAATCACCGGGGGACTTGGATTGAAGAGTGAAAGGCAGGAAGATGATGAGGGTGGCGTTAAGAAGGTTACTGATTTCACTTCCGATTCTGCTAAAAAGGCCAAAGACAAAATACAGAACGTCGCTTCAGGAGTGGGACAGTACGGCGCTGAAAAGGCCGAAGAAGTGAAAGGCATGGCGGCGGAGAAGGCTAGTGAGGCCAAAGATAAGGCAGCGAAACTGGGAACAGTAGCTGAGAAAACGACGGAAGCGGCGGACAAGGCAAAAGAAAAGGCACAAAATGCGGCAAAAGGAACCAAAGAGAAAGTTACCTCCCTAAAAAACAAAGCAGAAGAAAGCTCGGGTGAGGCGACTGAGAAAACGAAGGAAGCGGCCAATGAGGCGAGGAAAAAAACAGAAGAAACAGCAGAGGAGGCGAAGGAAAGAGCCTCGACGGGAGCAAGAGAGGCGGAGGAGAGAGCAGGAGAGATGAAGGAGAAGGCGAAAGTGAAGGGGAAGGAAGCGAAGGAGAGAGCGGAGGAGGAGGCAGGGAGGGCAGAGGAGATAGCGGATAAGGGGAAGAGATGGGCAAAGGAAGGGTTTGAGGCTGCGAAGGAGAAGGCAGAGGAGGTGGTGGGAGCGGCGAAGGAGAAGATAGGGGAGCAATACGAGGCGGCGAAGAAGAAGTCGCAGAGGATTAAAGACGACGTGGTTCGGTCCGAGGTGGAAGACGAGCTTTAA

Protein sequence

MPSSSSSIRVYRRRISLPAVAMAVTVVLLVFMVSICWSGSVGHMPSTTEEARDYQEMKSKAEEKDQTGETWTEWAKEKITGGLGLKSERQEDDEGGVKKVTDFTSDSAKKAKDKIQNVASGVGQYGAEKAEEVKGMAAEKASEAKDKAAKLGTVAEKTTEAADKAKEKAQNAAKGTKEKVTSLKNKAEESSGEATEKTKEAANEARKKTEETAEEAKERASTGAREAEERAGEMKEKAKVKGKEAKERAEEEAGRAEEIADKGKRWAKEGFEAAKEKAEEVVGAAKEKIGEQYEAAKKKSQRIKDDVVRSEVEDEL
Homology
[Close]
BLAST of CsGy3G015470 vs. NCBI nr
Match: XP_004147633.2 (PREDICTED: late embryogenesis abundant protein D-29 [Cucumis sativus] >KGN57211.1 hypothetical protein Csa_3G171190 [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 6.6e-60
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 3   SSSSSIRVYRRRISLPAVAMAVTVVLLVFMVSICWSGSVGHMPSTTEEARDYQEMKSKAE 62
           SSSSSIRVYRRRISLPAVAMAVTVVLLVFMVSICWSGSVGHMPSTTEEARDYQEMKSKAE
Sbjct: 4   SSSSSIRVYRRRISLPAVAMAVTVVLLVFMVSICWSGSVGHMPSTTEEARDYQEMKSKAE 63

Query: 63  EKDQTGETWTEWAKEKITGGLGLKSERQEDDEGGVKKVTDFTSDSAKKAKDKIQNVASGV 122
           EKDQTGETWTEWAKEKITGGLGLKSERQEDDEGGVKKVTDFTSDSAKKAKDKIQNVASGV
Sbjct: 64  EKDQTGETWTEWAKEKITGGLGLKSERQEDDEGGVKKVTDFTSDSAKKAKDKIQNVASGV 123

Query: 123 GQYGAEK 130
           GQYGAEK
Sbjct: 124 GQYGAEK 130

[Close]
BLAST of CsGy3G015470 vs. NCBI nr
Match: ADN34043.1 (late embryogenesis abundant protein D-29 [Cucumis melo subsp. melo])

HSP 1 Score: 204.9 bits (520), Expect = 4.0e-49
Identity = 112/133 (84.21%), Postives = 118/133 (88.72%), Query Frame = 0 

Query: 5   SSSIRVYRRRISLPAVAMAVTVVLLVFMVSICWSGSVGHMPSTTEEARDYQEMKSKA--- 64
           SSSIRVYRRRISLPAVAMAVT VLLVFMV+ICWSGSVGHMPST E+ARDY EMKSK    
Sbjct: 3   SSSIRVYRRRISLPAVAMAVTAVLLVFMVTICWSGSVGHMPSTEEDARDYHEMKSKVAAK 62

Query: 65  ---EEKDQTGETWTEWAKEKITGGLGLKSERQE--DDEGGVKKVTDFTSDSAKKAKDKIQ 124
              +EKDQT ETWTEWAKEKITGGLGLK+ER+E  DD+GGVKKVTDFTSDSA KAKDKIQ
Sbjct: 63  DDKKEKDQTAETWTEWAKEKITGGLGLKNEREEDQDDDGGVKKVTDFTSDSALKAKDKIQ 122

Query: 125 NVASGVGQYGAEK 130
           NVASGVGQYG EK
Sbjct: 123 NVASGVGQYGTEK 135

[Close]
BLAST of CsGy3G015470 vs. NCBI nr
Match: XP_008439004.2 (PREDICTED: LOW QUALITY PROTEIN: late embryogenesis abundant protein D-29 [Cucumis melo])

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-40
Identity = 95/116 (81.90%), Postives = 101/116 (87.07%), Query Frame = 0 

Query: 22  MAVTVVLLVFMVSICWSGSVGHMPSTTEEARDYQEMKSKA------EEKDQTGETWTEWA 81
           MAVT VLLVFMV+ICWSGSVGHMPST E+ARDY EMKSK       +EKDQT ETWTEWA
Sbjct: 1   MAVTAVLLVFMVTICWSGSVGHMPSTEEDARDYHEMKSKVAAKDDKKEKDQTAETWTEWA 60

Query: 82  KEKITGGLGLKSERQE--DDEGGVKKVTDFTSDSAKKAKDKIQNVASGVGQYGAEK 130
           KEKITGGLGLK+ER+E  DD+GGVKKVTDFTSDSA KAKDKIQNVASGVGQYG EK
Sbjct: 61  KEKITGGLGLKNEREEDQDDDGGVKKVTDFTSDSALKAKDKIQNVASGVGQYGTEK 116

[Close]
BLAST of CsGy3G015470 vs. NCBI nr
Match: XP_022979888.1 (late embryogenesis abundant protein D-29 [Cucurbita maxima])

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-23
Identity = 72/104 (69.23%), Postives = 81/104 (77.88%), Query Frame = 0 

Query: 7   SIRVYRRRISLPAVAMAVTVVLLVFMVSICWSGSVGHMPSTTEEARDYQEMK-----SKA 66
           SI+V+R RISLP   +AV V LLVF VS CWS +V H+PS TEEARDYQEMK        
Sbjct: 3   SIQVHRCRISLP---VAVAVALLVFTVSFCWSENVVHVPS-TEEARDYQEMKVEMAAKDE 62

Query: 67  EEKDQTGETWTEWAKEKITGGLGLKSERQEDDEGGVKKVTDFTS 106
           +EKDQ+ ETWTEWAKEKI+GGLGLK+ERQED   GVKKVTDFTS
Sbjct: 63  KEKDQSAETWTEWAKEKISGGLGLKNERQED---GVKKVTDFTS 99

[Close]
BLAST of CsGy3G015470 vs. NCBI nr
Match: XP_023540691.1 (late embryogenesis abundant protein D-29-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.2 bits (295), Expect = 4.9e-23
Identity = 75/129 (58.14%), Postives = 88/129 (68.22%), Query Frame = 0 

Query: 6   SSIRVYRRRISLPAVAMAVTVVLLVFMVSICWSGSVGHMPSTTEEARDYQEMKSK----- 65
           +SIRV RRRI LPAV  AV   +L+FMVS C SGSVGHMPST EE RDYQEMK K     
Sbjct: 2   ASIRVRRRRIILPAV--AVXXXVLIFMVSFCRSGSVGHMPSTEEEGRDYQEMKRKMAAKE 61

Query: 66  AEEKDQTGETWTEWAKEKITGGLGLKSERQEDDEGGVKKVTDFTSDSAKKAKDKIQNVAS 125
            +EKD++ ETWTEWAK+KI+GGLGL++E + D   GV               +KI+NVAS
Sbjct: 62  EKEKDRSSETWTEWAKKKISGGLGLRNELRAD---GV---------------NKIENVAS 110

Query: 126 GVGQYGAEK 130
             GQYGAEK
Sbjct: 122 EAGQYGAEK 110

[Close]
BLAST of CsGy3G015470 vs. TrEMBL
Match: tr|A0A0A0LAV6|A0A0A0LAV6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171190 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.4e-60
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 3   SSSSSIRVYRRRISLPAVAMAVTVVLLVFMVSICWSGSVGHMPSTTEEARDYQEMKSKAE 62
           SSSSSIRVYRRRISLPAVAMAVTVVLLVFMVSICWSGSVGHMPSTTEEARDYQEMKSKAE
Sbjct: 4   SSSSSIRVYRRRISLPAVAMAVTVVLLVFMVSICWSGSVGHMPSTTEEARDYQEMKSKAE 63

Query: 63  EKDQTGETWTEWAKEKITGGLGLKSERQEDDEGGVKKVTDFTSDSAKKAKDKIQNVASGV 122
           EKDQTGETWTEWAKEKITGGLGLKSERQEDDEGGVKKVTDFTSDSAKKAKDKIQNVASGV
Sbjct: 64  EKDQTGETWTEWAKEKITGGLGLKSERQEDDEGGVKKVTDFTSDSAKKAKDKIQNVASGV 123

Query: 123 GQYGAEK 130
           GQYGAEK
Sbjct: 124 GQYGAEK 130

[Close]
BLAST of CsGy3G015470 vs. TrEMBL
Match: tr|E5GC45|E5GC45_CUCME (Late embryogenesis abundant protein D-29 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.6e-49
Identity = 112/133 (84.21%), Postives = 118/133 (88.72%), Query Frame = 0 

Query: 5   SSSIRVYRRRISLPAVAMAVTVVLLVFMVSICWSGSVGHMPSTTEEARDYQEMKSKA--- 64
           SSSIRVYRRRISLPAVAMAVT VLLVFMV+ICWSGSVGHMPST E+ARDY EMKSK    
Sbjct: 3   SSSIRVYRRRISLPAVAMAVTAVLLVFMVTICWSGSVGHMPSTEEDARDYHEMKSKVAAK 62

Query: 65  ---EEKDQTGETWTEWAKEKITGGLGLKSERQE--DDEGGVKKVTDFTSDSAKKAKDKIQ 124
              +EKDQT ETWTEWAKEKITGGLGLK+ER+E  DD+GGVKKVTDFTSDSA KAKDKIQ
Sbjct: 63  DDKKEKDQTAETWTEWAKEKITGGLGLKNEREEDQDDDGGVKKVTDFTSDSALKAKDKIQ 122

Query: 125 NVASGVGQYGAEK 130
           NVASGVGQYG EK
Sbjct: 123 NVASGVGQYGTEK 135

[Close]
BLAST of CsGy3G015470 vs. TrEMBL
Match: tr|A0A1S3AYC6|A0A1S3AYC6_CUCME (LOW QUALITY PROTEIN: late embryogenesis abundant protein D-29 OS=Cucumis melo OX=3656 GN=LOC103483929 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 7.7e-41
Identity = 95/116 (81.90%), Postives = 101/116 (87.07%), Query Frame = 0 

Query: 22  MAVTVVLLVFMVSICWSGSVGHMPSTTEEARDYQEMKSKA------EEKDQTGETWTEWA 81
           MAVT VLLVFMV+ICWSGSVGHMPST E+ARDY EMKSK       +EKDQT ETWTEWA
Sbjct: 1   MAVTAVLLVFMVTICWSGSVGHMPSTEEDARDYHEMKSKVAAKDDKKEKDQTAETWTEWA 60

Query: 82  KEKITGGLGLKSERQE--DDEGGVKKVTDFTSDSAKKAKDKIQNVASGVGQYGAEK 130
           KEKITGGLGLK+ER+E  DD+GGVKKVTDFTSDSA KAKDKIQNVASGVGQYG EK
Sbjct: 61  KEKITGGLGLKNEREEDQDDDGGVKKVTDFTSDSALKAKDKIQNVASGVGQYGTEK 116

[Close]
BLAST of CsGy3G015470 vs. TrEMBL
Match: tr|V7C8J3|V7C8J3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G121900g PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.8e-09
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 0 

Query: 22  MAVTVVLLVFMVSICWSGSVGHMPSTTEEARDYQEMKSK-----------AEEKDQTGET 81
           ++V V+ ++ +   C+  SVGHMPST EE RD++E K+K           A+E  +  E+
Sbjct: 6   ISVLVMAVMLLAMNCYCTSVGHMPSTKEEGRDFEEAKAKTTQTANKAMDTAKEGKEATES 65

Query: 82  WTEWAKEKITGGLGLKSERQEDDEGGVKKVTDF 104
           WTEWAKEK+T GLG K + QE  E   KKV+D+
Sbjct: 66  WTEWAKEKLTEGLGFKHD-QEPKESTTKKVSDY 97

[Close]
BLAST of CsGy3G015470 vs. TrEMBL
Match: tr|A0A0E3UPY7|A0A0E3UPY7_ROSCH (Putative LEA-2 protein OS=Rosa chinensis OX=74649 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-07
Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 0 

Query: 24  VTVVLLVFMVSICWSGSVGHMPSTTEEARDYQEM-----KSKAEEKDQTG-----ETWTE 83
           + + + + + ++C    VGH+PST EE RD++E      K+K  E ++ G     E+WTE
Sbjct: 12  LVIAVAIMLANLCSGSGVGHIPSTEEEGRDFEEFNDQTGKAKVVEVEEKGGKEGSESWTE 71

Query: 84  WAKEKITGGLGLKSERQEDDEGGVKKVTDFTSDSAKKAKDKIQNVASGVGQYGAEK 130
           WAKEKI    GLK + + D +  +KK     SD+AK  KD     +SG GQY  EK
Sbjct: 72  WAKEKI----GLKHD-EHDGDSTIKK----ASDAAKNTKD----TSSGTGQYATEK 114

The following BLAST results are available for this feature:
BLAST of CsGy3G015470 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147633.26.6e-60100.00PREDICTED: late embryogenesis abundant protein D-29 [Cucumis sativus] >KGN57211.... [more]
ADN34043.14.0e-4984.21late embryogenesis abundant protein D-29 [Cucumis melo subsp. melo][more]
XP_008439004.21.2e-4081.90PREDICTED: LOW QUALITY PROTEIN: late embryogenesis abundant protein D-29 [Cucumi... [more]
XP_022979888.12.9e-2369.23late embryogenesis abundant protein D-29 [Cucurbita maxima][more]
XP_023540691.14.9e-2358.14late embryogenesis abundant protein D-29-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsGy3G015470 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G015470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G015470 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAV6|A0A0A0LAV6_CUCSA4.4e-60100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171190 PE=4 SV=1[more]
tr|E5GC45|E5GC45_CUCME2.6e-4984.21Late embryogenesis abundant protein D-29 OS=Cucumis melo subsp. melo OX=412675 P... [more]
tr|A0A1S3AYC6|A0A1S3AYC6_CUCME7.7e-4181.90LOW QUALITY PROTEIN: late embryogenesis abundant protein D-29 OS=Cucumis melo OX... [more]
tr|V7C8J3|V7C8J3_PHAVU7.8e-0944.09Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G121900g PE=4 ... [more]
tr|A0A0E3UPY7|A0A0E3UPY7_ROSCH4.3e-0738.79Putative LEA-2 protein OS=Rosa chinensis OX=74649 PE=2 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G015470.1CsGy3G015470.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 268..306
NoneNo IPR availableCOILSCoilCoilcoord: 166..186
NoneNo IPR availableCOILSCoilCoilcoord: 199..237
NoneNo IPR availableGENE3DG3DSA:1.20.120.20coord: 152..302
e-value: 7.2E-8
score: 34.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 294..316
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 294..310
NoneNo IPR availablePANTHERPTHR23241:SF65LATE EMBRYOGENESIS ABUNDANT PROTEIN LEA FAMILY PROTEIN-RELATEDcoord: 178..314
coord: 49..188
NoneNo IPR availablePANTHERPTHR23241LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATEDcoord: 178..314
coord: 49..188
NoneNo IPR availableSUPERFAMILYSSF58113Apolipoprotein A-Icoord: 160..307

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G015470Cla021833Watermelon (97103) v1cgybwmB217
CsGy3G015470Csa3G171190Cucumber (Chinese Long) v2cgybcuB109
CsGy3G015470MELO3C006757Melon (DHL92) v3.5.1cgybmeB200
CsGy3G015470ClCG05G006910Watermelon (Charleston Gray)cgybwcgB203
CsGy3G015470CSPI03G15410Wild cucumber (PI 183967)cgybcpiB110
CsGy3G015470CmaCh14G015560Cucurbita maxima (Rimu)cgybcmaB318
CsGy3G015470CmoCh06G015860Cucurbita moschata (Rifu)cgybcmoB401
CsGy3G015470CmoCh14G015910Cucurbita moschata (Rifu)cgybcmoB290
CsGy3G015470Lsi05G013820Bottle gourd (USVL1VR-Ls)cgyblsiB197
CsGy3G015470Cp4.1LG03g12040Cucurbita pepo (Zucchini)cgybcpeB406
CsGy3G015470MELO3C006757.2Melon (DHL92) v3.6.1cgybmedB201
CsGy3G015470CsaV3_3G015580Cucumber (Chinese Long) v3cgybcucB117
CsGy3G015470Cla97C05G088560Watermelon (97103) v2cgybwmbB196
CsGy3G015470Bhi01G000826Wax gourdcgybwgoB257
CsGy3G015470Carg19592Silver-seed gourdcarcgybB0294
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G015470Wax gourdcgybwgoB240
CsGy3G015470Cucurbita maxima (Rimu)cgybcmaB345
CsGy3G015470Cucurbita maxima (Rimu)cgybcmaB427
CsGy3G015470Cucurbita moschata (Rifu)cgybcmoB317
CsGy3G015470Cucurbita pepo (Zucchini)cgybcpeB303
CsGy3G015470Cucurbita pepo (Zucchini)cgybcpeB454
CsGy3G015470Bottle gourd (USVL1VR-Ls)cgyblsiB136
CsGy3G015470Melon (DHL92) v3.5.1cgybmeB149
CsGy3G015470Melon (DHL92) v3.6.1cgybmedB148
CsGy3G015470Watermelon (Charleston Gray)cgybwcgB230
CsGy3G015470Silver-seed gourdcarcgybB0072
CsGy3G015470Silver-seed gourdcarcgybB0736