CsGy3G011620 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTCTTATTTGCTCGGCCCTCGTTTGCACTCAGACCCACATGGATTTTCTCTCTATATCTCAGGAATTCATGCTCTCTTACTACTTCGACCTGTCGTTTGCAAGCCAGTCATGCTCCACCGACGTTTCCAAATCTAAAGCTTCTCAATTCCGAGATCTCAAACTGTATGAGAAATGGGTTAGTGGAACAAGCCCAGAAACTGTTCGATGGAATGCCTCAACGAAATATTGTGACTTGGAACGCCATGATTCGTGGGTACTTCTTGAATGGACGGTGTAGTGATGGGATTAGCTTGTTTCGTCGAATGCCCGAGCGTGATGTTTTCTCTTATAATACGGTGATTGGTGGGTTGATGCAATGTGGGGATGTTGATGGTGCTAAGGATATTTTTGATTTAATGCCGTTTAGAGATGTTGTGAGTTGGAATTCAATGATTGCGGGATGTATTCGGAATGGGTTACTAGAGGAGGCGATTCAGTTGTTTGATGGCATGCCATTGAAAAATGTAATTTCTTGGAACTTGATAATTGGGGGCTTGTAA ATGTTCTTATTTGCTCGGCCCTCGTTTGCACTCAGACCCACATGGATTTTCTCTCTATATCTCAGGAATTCATGCTCTCTTACTACTTCGACCTGTCGTTTGCAAGCCAGTCATGCTCCACCGACGTTTCCAAATCTAAAGCTTCTCAATTCCGAGATCTCAAACTGTATGAGAAATGGGTTAGTGGAACAAGCCCAGAAACTGTTCGATGGAATGCCTCAACGAAATATTGTGACTTGGAACGCCATGATTCGTGGGTACTTCTTGAATGGACGGTGTAGTGATGGGATTAGCTTGTTTCGTCGAATGCCCGAGCGTGATGTTTTCTCTTATAATACGGTGATTGGTGGGTTGATGCAATGTGGGGATGTTGATGGTGCTAAGGATATTTTTGATTTAATGCCGTTTAGAGATGTTGTGAGTTGGAATTCAATGATTGCGGGATGTATTCGGAATGGGTTACTAGAGGAGGCGATTCAGTTGTTTGATGGCATGCCATTGAAAAATGTAATTTCTTGGAACTTGATAATTGGGGGCTTGTAA ATGTTCTTATTTGCTCGGCCCTCGTTTGCACTCAGACCCACATGGATTTTCTCTCTATATCTCAGGAATTCATGCTCTCTTACTACTTCGACCTGTCGTTTGCAAGCCAGTCATGCTCCACCGACGTTTCCAAATCTAAAGCTTCTCAATTCCGAGATCTCAAACTGTATGAGAAATGGGTTAGTGGAACAAGCCCAGAAACTGTTCGATGGAATGCCTCAACGAAATATTGTGACTTGGAACGCCATGATTCGTGGGTACTTCTTGAATGGACGGTGTAGTGATGGGATTAGCTTGTTTCGTCGAATGCCCGAGCGTGATGTTTTCTCTTATAATACGGTGATTGGTGGGTTGATGCAATGTGGGGATGTTGATGGTGCTAAGGATATTTTTGATTTAATGCCGTTTAGAGATGTTGTGAGTTGGAATTCAATGATTGCGGGATGTATTCGGAATGGGTTACTAGAGGAGGCGATTCAGTTGTTTGATGGCATGCCATTGAAAAATGTAATTTCTTGGAACTTGATAATTGGGGGCTTGTAA MFLFARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASHAPPTFPNLKLLNSEISNCMRNGLVEQAQKLFDGMPQRNIVTWNAMIRGYFLNGRCSDGISLFRRMPERDVFSYNTVIGGLMQCGDVDGAKDIFDLMPFRDVVSWNSMIAGCIRNGLLEEAIQLFDGMPLKNVISWNLIIGGL
BLAST of CsGy3G011620 vs. NCBI nr
Match: XP_004134397.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis sativus] >KGN56811.1 hypothetical protein Csa_3G134600 [Cucumis sativus]) HSP 1 Score: 161.8 bits (408), Expect = 2.2e-36 Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0
BLAST of CsGy3G011620 vs. NCBI nr
Match: XP_008438461.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis melo]) HSP 1 Score: 144.1 bits (362), Expect = 4.8e-31 Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 0
BLAST of CsGy3G011620 vs. NCBI nr
Match: XP_022974531.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita maxima]) HSP 1 Score: 123.2 bits (308), Expect = 8.7e-25 Identity = 62/76 (81.58%), Postives = 64/76 (84.21%), Query Frame = 0
BLAST of CsGy3G011620 vs. NCBI nr
Match: XP_022937344.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita moschata]) HSP 1 Score: 121.3 bits (303), Expect = 3.3e-24 Identity = 61/76 (80.26%), Postives = 64/76 (84.21%), Query Frame = 0
BLAST of CsGy3G011620 vs. NCBI nr
Match: XP_023538642.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 120.9 bits (302), Expect = 4.3e-24 Identity = 61/78 (78.21%), Postives = 65/78 (83.33%), Query Frame = 0
BLAST of CsGy3G011620 vs. TrEMBL
Match: tr|A0A0A0L9N2|A0A0A0L9N2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134600 PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 1.5e-36 Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0
BLAST of CsGy3G011620 vs. TrEMBL
Match: tr|A0A1S3AWI6|A0A1S3AWI6_CUCME (pentatricopeptide repeat-containing protein At4g02750-like OS=Cucumis melo OX=3656 GN=LOC103483546 PE=4 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 3.2e-31 Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 0
BLAST of CsGy3G011620 vs. TrEMBL
Match: tr|A0A2P5FAN4|A0A2P5FAN4_9ROSA (Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_093630 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 3.0e-05 Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 0
BLAST of CsGy3G011620 vs. TrEMBL
Match: tr|A0A2P5ANQ9|A0A2P5ANQ9_PARAD (Tetratricopeptide-like helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_314650 PE=4 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 5.1e-05 Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0
BLAST of CsGy3G011620 vs. TrEMBL
Match: tr|A0A2I4EL31|A0A2I4EL31_9ROSI (pentatricopeptide repeat-containing protein At4g02750-like isoform X2 OS=Juglans regia OX=51240 GN=LOC108990553 PE=4 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04 Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |