CsGy3G011620 (gene) Cucumber (Gy14) v2

NameCsGy3G011620
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionmitochondrial editing factor 9
LocationChr3 : 8960896 .. 8961438 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTATTTGCTCGGCCCTCGTTTGCACTCAGACCCACATGGATTTTCTCTCTATATCTCAGGAATTCATGCTCTCTTACTACTTCGACCTGTCGTTTGCAAGCCAGTCATGCTCCACCGACGTTTCCAAATCTAAAGCTTCTCAATTCCGAGATCTCAAACTGTATGAGAAATGGGTTAGTGGAACAAGCCCAGAAACTGTTCGATGGAATGCCTCAACGAAATATTGTGACTTGGAACGCCATGATTCGTGGGTACTTCTTGAATGGACGGTGTAGTGATGGGATTAGCTTGTTTCGTCGAATGCCCGAGCGTGATGTTTTCTCTTATAATACGGTGATTGGTGGGTTGATGCAATGTGGGGATGTTGATGGTGCTAAGGATATTTTTGATTTAATGCCGTTTAGAGATGTTGTGAGTTGGAATTCAATGATTGCGGGATGTATTCGGAATGGGTTACTAGAGGAGGCGATTCAGTTGTTTGATGGCATGCCATTGAAAAATGTAATTTCTTGGAACTTGATAATTGGGGGCTTGTAA

mRNA sequence

ATGTTCTTATTTGCTCGGCCCTCGTTTGCACTCAGACCCACATGGATTTTCTCTCTATATCTCAGGAATTCATGCTCTCTTACTACTTCGACCTGTCGTTTGCAAGCCAGTCATGCTCCACCGACGTTTCCAAATCTAAAGCTTCTCAATTCCGAGATCTCAAACTGTATGAGAAATGGGTTAGTGGAACAAGCCCAGAAACTGTTCGATGGAATGCCTCAACGAAATATTGTGACTTGGAACGCCATGATTCGTGGGTACTTCTTGAATGGACGGTGTAGTGATGGGATTAGCTTGTTTCGTCGAATGCCCGAGCGTGATGTTTTCTCTTATAATACGGTGATTGGTGGGTTGATGCAATGTGGGGATGTTGATGGTGCTAAGGATATTTTTGATTTAATGCCGTTTAGAGATGTTGTGAGTTGGAATTCAATGATTGCGGGATGTATTCGGAATGGGTTACTAGAGGAGGCGATTCAGTTGTTTGATGGCATGCCATTGAAAAATGTAATTTCTTGGAACTTGATAATTGGGGGCTTGTAA

Coding sequence (CDS)

ATGTTCTTATTTGCTCGGCCCTCGTTTGCACTCAGACCCACATGGATTTTCTCTCTATATCTCAGGAATTCATGCTCTCTTACTACTTCGACCTGTCGTTTGCAAGCCAGTCATGCTCCACCGACGTTTCCAAATCTAAAGCTTCTCAATTCCGAGATCTCAAACTGTATGAGAAATGGGTTAGTGGAACAAGCCCAGAAACTGTTCGATGGAATGCCTCAACGAAATATTGTGACTTGGAACGCCATGATTCGTGGGTACTTCTTGAATGGACGGTGTAGTGATGGGATTAGCTTGTTTCGTCGAATGCCCGAGCGTGATGTTTTCTCTTATAATACGGTGATTGGTGGGTTGATGCAATGTGGGGATGTTGATGGTGCTAAGGATATTTTTGATTTAATGCCGTTTAGAGATGTTGTGAGTTGGAATTCAATGATTGCGGGATGTATTCGGAATGGGTTACTAGAGGAGGCGATTCAGTTGTTTGATGGCATGCCATTGAAAAATGTAATTTCTTGGAACTTGATAATTGGGGGCTTGTAA

Protein sequence

MFLFARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASHAPPTFPNLKLLNSEISNCMRNGLVEQAQKLFDGMPQRNIVTWNAMIRGYFLNGRCSDGISLFRRMPERDVFSYNTVIGGLMQCGDVDGAKDIFDLMPFRDVVSWNSMIAGCIRNGLLEEAIQLFDGMPLKNVISWNLIIGGL
BLAST of CsGy3G011620 vs. NCBI nr
Match: XP_004134397.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis sativus] >KGN56811.1 hypothetical protein Csa_3G134600 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 2.2e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MFLFARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASHAPPTFPNLKLLNSEISNCMRNG 60
          MFLFARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASHAPPTFPNLKLLNSEISNCMRNG
Sbjct: 1  MFLFARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASHAPPTFPNLKLLNSEISNCMRNG 60

Query: 61 LVEQAQKLFDGMPQRNIV 79
          LVEQAQKLFDGMPQRNIV
Sbjct: 61 LVEQAQKLFDGMPQRNIV 78

BLAST of CsGy3G011620 vs. NCBI nr
Match: XP_008438461.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 4.8e-31
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 0

Query: 1  MFLFARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASHAPPTFPNLKLLNSEISNCMRNG 60
          MFL ARPSFALRP WIFSLYLRNSCSLTTSTCR QASHA PTFPNLKLLNS+ISNCMR+G
Sbjct: 1  MFLLARPSFALRPKWIFSLYLRNSCSLTTSTCRSQASHATPTFPNLKLLNSDISNCMRSG 60

Query: 61 LVEQAQKLFDGMPQRNIV 79
          LVEQAQ+LFD MPQRN+V
Sbjct: 61 LVEQAQRLFDEMPQRNVV 78

BLAST of CsGy3G011620 vs. NCBI nr
Match: XP_022974531.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 8.7e-25
Identity = 62/76 (81.58%), Postives = 64/76 (84.21%), Query Frame = 0

Query: 1  MFLFARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASHAPPTFPNLKLLNSEISNCMRNG 60
          MF  ARPSFALRPTWIFSLY R S  L+TST  LQA HAPPTF NLK LNSEISNCMRNG
Sbjct: 1  MFFVARPSFALRPTWIFSLYRRTSILLSTSTSCLQARHAPPTFSNLKPLNSEISNCMRNG 60

Query: 61 LVEQAQKLFDGMPQRN 77
          LVE+AQKLFD MPQRN
Sbjct: 61 LVEEAQKLFDEMPQRN 76

BLAST of CsGy3G011620 vs. NCBI nr
Match: XP_022937344.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita moschata])

HSP 1 Score: 121.3 bits (303), Expect = 3.3e-24
Identity = 61/76 (80.26%), Postives = 64/76 (84.21%), Query Frame = 0

Query: 1  MFLFARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASHAPPTFPNLKLLNSEISNCMRNG 60
          MF  ARPSFALRPTWIFSLY R S  L+TST  LQA HAPPTF NLK LNSEISNCMRNG
Sbjct: 1  MFFVARPSFALRPTWIFSLYRRTSILLSTSTYCLQARHAPPTFSNLKPLNSEISNCMRNG 60

Query: 61 LVEQAQKLFDGMPQRN 77
          LV++AQKLFD MPQRN
Sbjct: 61 LVKEAQKLFDEMPQRN 76

BLAST of CsGy3G011620 vs. NCBI nr
Match: XP_023538642.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.9 bits (302), Expect = 4.3e-24
Identity = 61/78 (78.21%), Postives = 65/78 (83.33%), Query Frame = 0

Query: 1  MFLFARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASHAPPTFPNLKLLNSEISNCMRNG 60
          MF  AR SFALRPTWIFSLY R S  L+TST  LQA HAPPTF NLK LNSEIS+CMRNG
Sbjct: 1  MFFVARSSFALRPTWIFSLYRRTSILLSTSTSCLQARHAPPTFSNLKPLNSEISSCMRNG 60

Query: 61 LVEQAQKLFDGMPQRNIV 79
          LVE+AQKLFD MPQRN+V
Sbjct: 61 LVEEAQKLFDEMPQRNVV 78

BLAST of CsGy3G011620 vs. TrEMBL
Match: tr|A0A0A0L9N2|A0A0A0L9N2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134600 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.5e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MFLFARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASHAPPTFPNLKLLNSEISNCMRNG 60
          MFLFARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASHAPPTFPNLKLLNSEISNCMRNG
Sbjct: 1  MFLFARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASHAPPTFPNLKLLNSEISNCMRNG 60

Query: 61 LVEQAQKLFDGMPQRNIV 79
          LVEQAQKLFDGMPQRNIV
Sbjct: 61 LVEQAQKLFDGMPQRNIV 78

BLAST of CsGy3G011620 vs. TrEMBL
Match: tr|A0A1S3AWI6|A0A1S3AWI6_CUCME (pentatricopeptide repeat-containing protein At4g02750-like OS=Cucumis melo OX=3656 GN=LOC103483546 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.2e-31
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 0

Query: 1  MFLFARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASHAPPTFPNLKLLNSEISNCMRNG 60
          MFL ARPSFALRP WIFSLYLRNSCSLTTSTCR QASHA PTFPNLKLLNS+ISNCMR+G
Sbjct: 1  MFLLARPSFALRPKWIFSLYLRNSCSLTTSTCRSQASHATPTFPNLKLLNSDISNCMRSG 60

Query: 61 LVEQAQKLFDGMPQRNIV 79
          LVEQAQ+LFD MPQRN+V
Sbjct: 61 LVEQAQRLFDEMPQRNVV 78

BLAST of CsGy3G011620 vs. TrEMBL
Match: tr|A0A2P5FAN4|A0A2P5FAN4_9ROSA (Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_093630 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.0e-05
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 18 SLYLRNSCSLTTSTCRLQASHA--PPTFPNLKLLNSEISNCMRNGLVEQAQKLFDGMPQR 77
          SL+L    S T +T  +Q +HA    T PNL+ LNS+IS+ MR GLV+ AQKLFD MPQR
Sbjct: 19 SLHLIKPIS-TATTAFIQHNHASQTQTLPNLRPLNSKISSYMRYGLVDDAQKLFDKMPQR 78

Query: 78 NIV 79
          N V
Sbjct: 79 NTV 80

BLAST of CsGy3G011620 vs. TrEMBL
Match: tr|A0A2P5ANQ9|A0A2P5ANQ9_PARAD (Tetratricopeptide-like helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_314650 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.1e-05
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 28 TTSTCRLQASHA--PPTFPNLKLLNSEISNCMRNGLVEQAQKLFDGMPQRN 77
          T +T  +Q +HA    T PNL+  NS+IS+ MR+GLV++AQKLFD MPQRN
Sbjct: 28 TATTAFIQQNHASQTQTLPNLRPFNSKISSYMRHGLVDEAQKLFDKMPQRN 78

BLAST of CsGy3G011620 vs. TrEMBL
Match: tr|A0A2I4EL31|A0A2I4EL31_9ROSI (pentatricopeptide repeat-containing protein At4g02750-like isoform X2 OS=Juglans regia OX=51240 GN=LOC108990553 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 1  MFL---FARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASHAPPTFPNLKLLNSEISNCM 60
          MFL   F+R + AL+ T   SL L  +  L       Q + A    PNLK LNS+IS+ +
Sbjct: 1  MFLFCFFSRATQALKVTQNPSLNLAKTHCLANPELFTQ-NRAKAMIPNLKPLNSKISSYV 60

Query: 61 RNGLVEQAQKLFDGMPQRNIV 79
          +NGLVE+A+KLFD MPQ+N V
Sbjct: 61 KNGLVEEARKLFDKMPQKNTV 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004134397.12.2e-36100.00PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis s... [more]
XP_008438461.14.8e-3188.46PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis m... [more]
XP_022974531.18.7e-2581.58pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita maxima][more]
XP_022937344.13.3e-2480.26pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita moschata][more]
XP_023538642.14.3e-2478.21pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L9N2|A0A0A0L9N2_CUCSA1.5e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134600 PE=4 SV=1[more]
tr|A0A1S3AWI6|A0A1S3AWI6_CUCME3.2e-3188.46pentatricopeptide repeat-containing protein At4g02750-like OS=Cucumis melo OX=36... [more]
tr|A0A2P5FAN4|A0A2P5FAN4_9ROSA3.0e-0555.56Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=... [more]
tr|A0A2P5ANQ9|A0A2P5ANQ9_PARAD5.1e-0556.86Tetratricopeptide-like helical domain containing protein OS=Parasponia andersoni... [more]
tr|A0A2I4EL31|A0A2I4EL31_9ROSI1.5e-0446.91pentatricopeptide repeat-containing protein At4g02750-like isoform X2 OS=Juglans... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G011620.1CsGy3G011620.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 140..169
e-value: 1.6E-7
score: 29.1
coord: 78..108
e-value: 2.9E-7
score: 28.3
coord: 109..139
e-value: 8.8E-7
score: 26.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 140..169
e-value: 7.5E-9
score: 35.2
coord: 78..107
e-value: 4.0E-8
score: 32.9
coord: 109..135
e-value: 7.1E-6
score: 25.8
coord: 53..77
e-value: 0.017
score: 15.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 76..110
score: 10.939
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 45..75
score: 7.443
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 111..137
score: 5.864
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 138..172
score: 11.652
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 42..180
e-value: 1.5E-33
score: 118.5
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 99..179
coord: 45..148
NoneNo IPR availablePANTHERPTHR24015:SF433SUBFAMILY NOT NAMEDcoord: 99..179
coord: 45..148

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G011620Cucumber (Gy14) v2cgybcgybB045
CsGy3G011620Cucumber (Gy14) v2cgybcgybB082
CsGy3G011620Cucurbita maxima (Rimu)cgybcmaB279
CsGy3G011620Cucurbita maxima (Rimu)cgybcmaB318
CsGy3G011620Cucurbita maxima (Rimu)cgybcmaB345
CsGy3G011620Cucurbita maxima (Rimu)cgybcmaB391
CsGy3G011620Cucurbita maxima (Rimu)cgybcmaB427
CsGy3G011620Cucurbita maxima (Rimu)cgybcmaB454
CsGy3G011620Cucurbita moschata (Rifu)cgybcmoB290
CsGy3G011620Cucurbita moschata (Rifu)cgybcmoB317
CsGy3G011620Cucurbita moschata (Rifu)cgybcmoB362
CsGy3G011620Cucurbita moschata (Rifu)cgybcmoB401
CsGy3G011620Cucurbita moschata (Rifu)cgybcmoB421
CsGy3G011620Cucurbita pepo (Zucchini)cgybcpeB302
CsGy3G011620Cucurbita pepo (Zucchini)cgybcpeB354
CsGy3G011620Cucurbita pepo (Zucchini)cgybcpeB406
CsGy3G011620Cucurbita pepo (Zucchini)cgybcpeB432
CsGy3G011620Cucumber (Chinese Long) v2cgybcuB101
CsGy3G011620Cucumber (Chinese Long) v2cgybcuB109
CsGy3G011620Cucumber (Chinese Long) v2cgybcuB121
CsGy3G011620Bottle gourd (USVL1VR-Ls)cgyblsiB136
CsGy3G011620Bottle gourd (USVL1VR-Ls)cgyblsiB196
CsGy3G011620Bottle gourd (USVL1VR-Ls)cgyblsiB204
CsGy3G011620Melon (DHL92) v3.5.1cgybmeB183
CsGy3G011620Melon (DHL92) v3.5.1cgybmeB195
CsGy3G011620Melon (DHL92) v3.5.1cgybmeB200
CsGy3G011620Melon (DHL92) v3.6.1cgybmedB184
CsGy3G011620Melon (DHL92) v3.6.1cgybmedB197
CsGy3G011620Watermelon (Charleston Gray)cgybwcgB203
CsGy3G011620Watermelon (Charleston Gray)cgybwcgB230
CsGy3G011620Watermelon (Charleston Gray)cgybwcgB238
CsGy3G011620Watermelon (97103) v1cgybwmB207
CsGy3G011620Watermelon (97103) v1cgybwmB217
CsGy3G011620Watermelon (97103) v1cgybwmB262
CsGy3G011620Wild cucumber (PI 183967)cgybcpiB100
CsGy3G011620Wild cucumber (PI 183967)cgybcpiB110
CsGy3G011620Wild cucumber (PI 183967)cgybcpiB121
CsGy3G011620Silver-seed gourdcarcgybB0251
CsGy3G011620Silver-seed gourdcarcgybB0245
CsGy3G011620Silver-seed gourdcarcgybB0772
CsGy3G011620Silver-seed gourdcarcgybB1059
CsGy3G011620Cucumber (Chinese Long) v3cgybcucB109
CsGy3G011620Cucumber (Chinese Long) v3cgybcucB125
CsGy3G011620Watermelon (97103) v2cgybwmbB222
CsGy3G011620Watermelon (97103) v2cgybwmbB231
CsGy3G011620Wax gourdcgybwgoB238
CsGy3G011620Wax gourdcgybwgoB279
CsGy3G011620Wax gourdcgybwgoB293