Bhi01G000469 (gene) Wax gourd

Overview
NameBhi01G000469
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionpentatricopeptide repeat-containing protein At4g02750-like
Locationchr1 : 11961604 .. 11964418 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATTTCCACAATATCGGTAACACGTTTCTGTCGATATATGTATGTTTCAGACTCTGTCTGAAGGCTTCCGCGGGAAGGCCACGGCAATTGTTTGTTCATAGCTTGACACGCTTGGAATTGGCGAAACCTCAGGCGAAAACTATATATATTACCCACTCGGTTCACCTCTCTTCCACTCTTGTTGTTTCTAAACTAATGGAGAATGTTCTTTTTAGCTCGGCCCTCATTTGCTCTTCGACCCATATGGATCTTCTCTCTATATCTCAGGAAATCATGCTCTCTTGCTACTTCGACCTATCGCTTGCAAGCCCGTCATGCTCCACCAACGTTTCAAAATTTAAAGCCCCTCAATTCCAAGATCTCAAACTATATGAGAAATGGGCTAGTGGAAGAAGCCCAGAAACTGTTCGACGAAATGCCTCGACGAAATGTTGTGACTTGGAACGCCATGATTCGTGGGTACTTCTTGAATGGGCGGTGTGGTGATGGGATTAGCTTGTTTCGTCGAATGCCCGAGCGTGATGTTTTCTCTTATAATACGGTGATTGGTGGGTTGATGCAATGTGGGGATGTTGATGGTGCTAAGGATATTTTTTATGTAATGCCGTCTAGAGATGTTGTGAGTTGGAATTCAATGATTGCGGGATGTATTCGGAATGGGTTACTAGAGGAAGCGATTGAGCTGTTTGATTACATGCCTGTGAAAGATGTAATTTCTTGGAACTTGATAATTGGTGGGCTTGTAAATTGCGGCAAACTTGATTCGGCTGAAGAGTACTTTTGCAAAATGAGCAGGAGGGATCTTGTGTCATGGACCATCATGATATCGGGGCTTTCCCGTGCTGGACGGCTTGATGAAGCGAGGGAGCTTTTCGATAACATGCCCATGAAAGATACTCGAGTATGGAATGCGATGATGGCCGGATATATAGAGAATGGGCGGATTGAAATGGCAGAGGAGTTGTTTGGGATAATGCCTGAACGAAACTTTGATTGTTGGAACGATTTAGTTAACGGGTTGGTTGGAAGCCAAAGGGTTGATGATGCTAGGAAGCTTTTTATGGAAATGCCAGAGAAATGCCAGAAAACATGGAACAGTATTGTGCTGGCATACATAAGAAATGGGCTGGTTTTACAAACTCATGCACTTCTTGAAAAAATACCATATGGTAATATAGCTTCGTGGACTAATTTGATTGTGGGATATTTTGGGATTGGTGAAGTTAGAATGGCAGTGGGGATTTTTGAATCGATGCAGTACAAAGATGCAACTGTGTGGAATGCTACAATATTTGGATTGGGAGAAAACGATGAAGGTGAGGAAGGTTTGAAGCTCTTTACTAGAATGATAAGGTTAGGTCCACATCTTGATAAAGCTACATTTACGAGTGTTTTAACAATTTGTTCTGACCTGGAAACTTTGCAGCTTGGTAGACAAACACATGCACTTATTATAAAAGAAGGATTCAATGGCTATGTTGCGGTCTCAAATGCTATGGTTAATATGTATGCAAGATGTGGAAATATGGATTGTGCCTTGGTGGAGTTCTCTTCCATGTCGAACAGGGATGTAATTTCCTGGAATTCTATCATTTGTGGTTTTGCTCACCATGGAAATGGCGAAGAAGCTCTGAAAATGTTTGAAAAAATGAGATTAGCTAACATAGAACCCAATCATATAACCTTTATTGGTGTTCTATCTGCCTGTAGCCATAAAGGTCTGGTGGACCAGGGTAGATATTATTTCGATTTTATGAAAAATGAATGTTCTCTTCAGCCATTGATTGAGCATTATACATGCTTAGTTGACTTGTTTGGGAGATTTGGGCTTATTGATGAGGCATTATGTTTTCTAGTCGAAATGAAAGAAGAGGAAATTGAAGTTCCTCCGAGTGTCTGGGGGGCTTTGCTTGGAGCTTGCAGAATCCATAATAATTATGATGCAGGGATGATTGCAGGTGAAAAGGTCCTGGAAAAAGAGCCTCATAACTCTGGAGTGTATTTGATTTTAGCAGAAATGTATTTGAGAAGTGGGAAAAGAGAAAATGCCGAAAGGATTTTGGCAAGAATGAAGAATAATGGAGTTAAGAAACAACCAGGGTGTAGTTGGATTGAAGTAAACAATAGTGGGTACGTCTTTCTTTCTGGAGATCGTTCAAATCCTCATTTTGATAGAATCTGTTATGTTGTAAAGTTGTTAAATCTGGAGATAAATGGAATTCTAAAATGACAGAAGCTGAGTTGCAAACATAGCGATGAAAAATGCATATCAAGATCGGTTTTGTAGCAATGTAAGTGGAGAGTTTTGTTGGTTGCTAATAGAACTTCATTCGTCTAAAGTTTTCAAGTTCAAAACATCTCAGGCTACATGGATAAAAAGTACTTTATGTTAGTGCGGAAGCTGATTCCAAGCTTTGATATGAACGAGGAATCGGTTGCTGAACAATTAGACAGAGCACCACAATGATACTAAAAGACTGGACTCAAGTGTTATATATTTGGCCTATTGAAAGGTAACACGCCGGAAATCATCAGCCCAAGTACTGGTCTCTTGTTTCTAGTGAGTTGTCTTTGACATGAAGCTGCTGCCTCTGTAGGCCGTACCATTCTTTCCAATGCTTCGACATTTACTATCAGCAGTCTCCTTGGATCTCCTCGAGGAAATGGGATTCTCATTGGCACTGTGGCTAGCGATGATCTTACATTGTGAGTGTCTGGACTGGACTGAATTGTGATTCTTCAAAACTGACGGTTTTTCAGTTGTTTTTCTGTTTTTCTTCCCAATCATTAGATCATTTTCTGAAATAGAATATT

mRNA sequence

TAATTTCCACAATATCGGTAACACGTTTCTGTCGATATATGTATGTTTCAGACTCTGTCTGAAGGCTTCCGCGGGAAGGCCACGGCAATTGTTTGTTCATAGCTTGACACGCTTGGAATTGGCGAAACCTCAGGCGAAAACTATATATATTACCCACTCGGTTCACCTCTCTTCCACTCTTGTTGTTTCTAAACTAATGGAGAATGTTCTTTTTAGCTCGGCCCTCATTTGCTCTTCGACCCATATGGATCTTCTCTCTATATCTCAGGAAATCATGCTCTCTTGCTACTTCGACCTATCGCTTGCAAGCCCGTCATGCTCCACCAACGTTTCAAAATTTAAAGCCCCTCAATTCCAAGATCTCAAACTATATGAGAAATGGGCTAGTGGAAGAAGCCCAGAAACTGTTCGACGAAATGCCTCGACGAAATGTTGTGACTTGGAACGCCATGATTCGTGGGTACTTCTTGAATGGGCGGTGTGGTGATGGGATTAGCTTGTTTCGTCGAATGCCCGAGCGTGATGTTTTCTCTTATAATACGGTGATTGGTGGGTTGATGCAATGTGGGGATGTTGATGGTGCTAAGGATATTTTTTATGTAATGCCGTCTAGAGATGTTGTGAGTTGGAATTCAATGATTGCGGGATGTATTCGGAATGGGTTACTAGAGGAAGCGATTGAGCTGTTTGATTACATGCCTGTGAAAGATGTAATTTCTTGGAACTTGATAATTGGTGGGCTTGTAAATTGCGGCAAACTTGATTCGGCTGAAGAGTACTTTTGCAAAATGAGCAGGAGGGATCTTGTGTCATGGACCATCATGATATCGGGGCTTTCCCGTGCTGGACGGCTTGATGAAGCGAGGGAGCTTTTCGATAACATGCCCATGAAAGATACTCGAGTATGGAATGCGATGATGGCCGGATATATAGAGAATGGGCGGATTGAAATGGCAGAGGAGTTGTTTGGGATAATGCCTGAACGAAACTTTGATTGTTGGAACGATTTAGTTAACGGGTTGGTTGGAAGCCAAAGGGTTGATGATGCTAGGAAGCTTTTTATGGAAATGCCAGAGAAATGCCAGAAAACATGGAACAGTATTGTGCTGGCATACATAAGAAATGGGCTGGTTTTACAAACTCATGCACTTCTTGAAAAAATACCATATGGTAATATAGCTTCGTGGACTAATTTGATTGTGGGATATTTTGGGATTGGTGAAGTTAGAATGGCAGTGGGGATTTTTGAATCGATGCAGTACAAAGATGCAACTGTGTGGAATGCTACAATATTTGGATTGGGAGAAAACGATGAAGGTGAGGAAGGTTTGAAGCTCTTTACTAGAATGATAAGCTTGGTAGACAAACACATGCACTTATTATAAAAGAAGGATTCAATGGCTATGTTGCGGTCTCAAATGCTATGGTTAATATGTATGCAAGATGTGGAAATATGGATTGTGCCTTGGTGGAGTTCTCTTCCATGTCGAACAGGGATGTAATTTCCTGGAATTCTATCATTTGTGGTTTTGCTCACCATGGAAATGGCGAAGAAGCTCTGAAAATGTTTGAAAAAATGAGATTAGCTAACATAGAACCCAATCATATAACCTTTATTGGTGTTCTATCTGCCTGTAGCCATAAAGGTCTGGTGGACCAGGGTAGATATTATTTCGATTTTATGAAAAATGAATGTTCTCTTCAGCCATTGATTGAGCATTATACATGCTTAGTTGACTTGTTTGGGAGATTTGGGCTTATTGATGAGGCATTATGTTTTCTAGTCGAAATGAAAGAAGAGGAAATTGAAGTTCCTCCGAGTGTCTGGGGGGCTTTGCTTGGAGCTTGCAGAATCCATAATAATTATGATGCAGGGATGATTGCAGGTGAAAAGGTCCTGGAAAAAGAGCCTCATAACTCTGGAGTGTATTTGATTTTAGCAGAAATGTATTTGAGAAGTGGGAAAAGAGAAAATGCCGAAAGGATTTTGGCAAGAATGAAGAATAATGGAGTTAAGAAACAACCAGGGTGTAGTTGGATTGAAGTAAACAATAGTGGGTACGTCTTTCTTTCTGGAGATCGTTCAAATCCTCATTTTGATAGAATCTGTTATGTTGTAAAGTTGTTAAATCTGGAGATAAATGGAATTCTAAAATGACAGAAGCTGAGTTGCAAACATAGCGATGAAAAATGCATATCAAGATCGGTTTTGTAGCAATGTAAGTGGAGAGTTTTGTTGGTTGCTAATAGAACTTCATTCGTCTAAAGTTTTCAAGTTCAAAACATCTCAGGCTACATGGATAAAAAGTACTTTATGTTAGTGCGGAAGCTGATTCCAAGCTTTGATATGAACGAGGAATCGGTTGCTGAACAATTAGACAGAGCACCACAATGATACTAAAAGACTGGACTCAAGTGTTATATATTTGGCCTATTGAAAGGTAACACGCCGGAAATCATCAGCCCAAGTACTGGTCTCTTGTTTCTAGTGAGTTGTCTTTGACATGAAGCTGCTGCCTCTGTAGGCCGTACCATTCTTTCCAATGCTTCGACATTTACTATCAGCAGTCTCCTTGGATCTCCTCGAGGAAATGGGATTCTCATTGGCACTGTGGCTAGCGATGATCTTACATTGTGAGTGTCTGGACTGGACTGAATTGTGATTCTTCAAAACTGACGGTTTTTCAGTTGTTTTTCTGTTTTTCTTCCCAATCATTAGATCATTTTCTGAAATAGAATATT

Coding sequence (CDS)

ATGTTCTTTTTAGCTCGGCCCTCATTTGCTCTTCGACCCATATGGATCTTCTCTCTATATCTCAGGAAATCATGCTCTCTTGCTACTTCGACCTATCGCTTGCAAGCCCGTCATGCTCCACCAACGTTTCAAAATTTAAAGCCCCTCAATTCCAAGATCTCAAACTATATGAGAAATGGGCTAGTGGAAGAAGCCCAGAAACTGTTCGACGAAATGCCTCGACGAAATGTTGTGACTTGGAACGCCATGATTCGTGGGTACTTCTTGAATGGGCGGTGTGGTGATGGGATTAGCTTGTTTCGTCGAATGCCCGAGCGTGATGTTTTCTCTTATAATACGGTGATTGGTGGGTTGATGCAATGTGGGGATGTTGATGGTGCTAAGGATATTTTTTATGTAATGCCGTCTAGAGATGTTGTGAGTTGGAATTCAATGATTGCGGGATGTATTCGGAATGGGTTACTAGAGGAAGCGATTGAGCTGTTTGATTACATGCCTGTGAAAGATGTAATTTCTTGGAACTTGATAATTGGTGGGCTTGTAAATTGCGGCAAACTTGATTCGGCTGAAGAGTACTTTTGCAAAATGAGCAGGAGGGATCTTGTGTCATGGACCATCATGATATCGGGGCTTTCCCGTGCTGGACGGCTTGATGAAGCGAGGGAGCTTTTCGATAACATGCCCATGAAAGATACTCGAGTATGGAATGCGATGATGGCCGGATATATAGAGAATGGGCGGATTGAAATGGCAGAGGAGTTGTTTGGGATAATGCCTGAACGAAACTTTGATTGTTGGAACGATTTAGTTAACGGGTTGGTTGGAAGCCAAAGGGTTGATGATGCTAGGAAGCTTTTTATGGAAATGCCAGAGAAATGCCAGAAAACATGGAACAGTATTGTGCTGGCATACATAAGAAATGGGCTGGTTTTACAAACTCATGCACTTCTTGAAAAAATACCATATGGTAATATAGCTTCGTGGACTAATTTGATTGTGGGATATTTTGGGATTGGTGAAGTTAGAATGGCAGTGGGGATTTTTGAATCGATGCAGTACAAAGATGCAACTGTGTGGAATGCTACAATATTTGGATTGGGAGAAAACGATGAAGGTGAGGAAGGTTTGAAGCTCTTTACTAGAATGATAAGCTTGGTAGACAAACACATGCACTTATTATAA

Protein sequence

MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHAPPTFQNLKPLNSKISNYMRNGLVEEAQKLFDEMPRRNVVTWNAMIRGYFLNGRCGDGISLFRRMPERDVFSYNTVIGGLMQCGDVDGAKDIFYVMPSRDVVSWNSMIAGCIRNGLLEEAIELFDYMPVKDVISWNLIIGGLVNCGKLDSAEEYFCKMSRRDLVSWTIMISGLSRAGRLDEARELFDNMPMKDTRVWNAMMAGYIENGRIEMAEELFGIMPERNFDCWNDLVNGLVGSQRVDDARKLFMEMPEKCQKTWNSIVLAYIRNGLVLQTHALLEKIPYGNIASWTNLIVGYFGIGEVRMAVGIFESMQYKDATVWNATIFGLGENDEGEEGLKLFTRMISLVDKHMHLL
Homology
[Close]
BLAST of Bhi01G000469 vs. TrEMBL
Match: tr|A0A0A0L9N2|A0A0A0L9N2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134600 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.7e-24
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 0 

Query: 1  MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHAPPTFQNLKPLNSKISNYMRNG 60
          MF  ARPSFALRP WIFSLYLR SCSL TST RLQA HAPPTF NLK LNS+ISN MRNG
Sbjct: 1  MFLFARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASHAPPTFPNLKLLNSEISNCMRNG 60

Query: 61 LVEEAQKLFDEMPRR 76
          LVE+AQKLFD MP+R
Sbjct: 61 LVEQAQKLFDGMPQR 75

[Close]
BLAST of Bhi01G000469 vs. TrEMBL
Match: tr|A0A1S3AWI6|A0A1S3AWI6_CUCME (pentatricopeptide repeat-containing protein At4g02750-like OS=Cucumis melo OX=3656 GN=LOC103483546 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.0e-22
Identity = 59/75 (78.67%), Postives = 63/75 (84.00%), Query Frame = 0 

Query: 1  MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHAPPTFQNLKPLNSKISNYMRNG 60
          MF LARPSFALRP WIFSLYLR SCSL TST R QA HA PTF NLK LNS ISN MR+G
Sbjct: 1  MFLLARPSFALRPKWIFSLYLRNSCSLTTSTCRSQASHATPTFPNLKLLNSDISNCMRSG 60

Query: 61 LVEEAQKLFDEMPRR 76
          LVE+AQ+LFDEMP+R
Sbjct: 61 LVEQAQRLFDEMPQR 75

[Close]
BLAST of Bhi01G000469 vs. TrEMBL
Match: tr|A0A2P5FAN4|A0A2P5FAN4_9ROSA (Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_093630 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 0 

Query: 1  MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHA--PPTFQNLKPLNSKISNYMR 60
          +F  +    A + I   SL+L K  S AT+ + +Q  HA    T  NL+PLNSKIS+YMR
Sbjct: 2  LFSTSHIDHARKLIQTLSLHLIKPISTATTAF-IQHNHASQTQTLPNLRPLNSKISSYMR 61

Query: 61 NGLVEEAQKLFDEMPRR 76
           GLV++AQKLFD+MP+R
Sbjct: 62 YGLVDDAQKLFDKMPQR 77

[Close]
BLAST of Bhi01G000469 vs. TrEMBL
Match: tr|A0A2P5ANQ9|A0A2P5ANQ9_PARAD (Tetratricopeptide-like helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_314650 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0 

Query: 1  MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHA--PPTFQNLKPLNSKISNYMR 60
          +F  +    A + I   S++L K  S AT+ + +Q  HA    T  NL+P NSKIS+YMR
Sbjct: 2  LFSTSHIDHARKLIQTLSVHLVKPLSTATTAF-IQQNHASQTQTLPNLRPFNSKISSYMR 61

Query: 61 NGLVEEAQKLFDEMPRR 76
          +GLV+EAQKLFD+MP+R
Sbjct: 62 HGLVDEAQKLFDKMPQR 77

[Close]
BLAST of Bhi01G000469 vs. TrEMBL
Match: tr|A0A2P6QRH4|A0A2P6QRH4_ROSCH (Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0395421 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-06
Identity = 36/60 (60.00%), Postives = 39/60 (65.00%), Query Frame = 0 

Query: 16 IFSLYLRKSCSLATSTYRLQARHAPPTFQNLKPLNSKISNYMRNGLVEEAQKLFDEMPRR 75
          + SL L KS   A +T   Q        QNLKPLNSKIS +MRNG VEEAQKLFDEMP R
Sbjct: 28 LLSLSLTKSLCTAAATSFFQT-------QNLKPLNSKISTHMRNGFVEEAQKLFDEMPHR 80

[Close]
BLAST of Bhi01G000469 vs. NCBI nr
Match: XP_022937344.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita moschata])

HSP 1 Score: 125.2 bits (313), Expect = 5.0e-25
Identity = 62/75 (82.67%), Postives = 67/75 (89.33%), Query Frame = 0 

Query: 1  MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHAPPTFQNLKPLNSKISNYMRNG 60
          MFF+ARPSFALRP WIFSLY R S  L+TSTY LQARHAPPTF NLKPLNS+ISN MRNG
Sbjct: 1  MFFVARPSFALRPTWIFSLYRRTSILLSTSTYCLQARHAPPTFSNLKPLNSEISNCMRNG 60

Query: 61 LVEEAQKLFDEMPRR 76
          LV+EAQKLFDEMP+R
Sbjct: 61 LVKEAQKLFDEMPQR 75

[Close]
BLAST of Bhi01G000469 vs. NCBI nr
Match: XP_022974531.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-24
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 0 

Query: 1  MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHAPPTFQNLKPLNSKISNYMRNG 60
          MFF+ARPSFALRP WIFSLY R S  L+TST  LQARHAPPTF NLKPLNS+ISN MRNG
Sbjct: 1  MFFVARPSFALRPTWIFSLYRRTSILLSTSTSCLQARHAPPTFSNLKPLNSEISNCMRNG 60

Query: 61 LVEEAQKLFDEMPRR 76
          LVEEAQKLFDEMP+R
Sbjct: 61 LVEEAQKLFDEMPQR 75

[Close]
BLAST of Bhi01G000469 vs. NCBI nr
Match: XP_004134397.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis sativus] >KGN56811.1 hypothetical protein Csa_3G134600 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 5.5e-24
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 0 

Query: 1  MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHAPPTFQNLKPLNSKISNYMRNG 60
          MF  ARPSFALRP WIFSLYLR SCSL TST RLQA HAPPTF NLK LNS+ISN MRNG
Sbjct: 1  MFLFARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASHAPPTFPNLKLLNSEISNCMRNG 60

Query: 61 LVEEAQKLFDEMPRR 76
          LVE+AQKLFD MP+R
Sbjct: 61 LVEQAQKLFDGMPQR 75

[Close]
BLAST of Bhi01G000469 vs. NCBI nr
Match: XP_023538642.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.2 bits (295), Expect = 6.1e-23
Identity = 60/75 (80.00%), Postives = 65/75 (86.67%), Query Frame = 0 

Query: 1  MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHAPPTFQNLKPLNSKISNYMRNG 60
          MFF+AR SFALRP WIFSLY R S  L+TST  LQARHAPPTF NLKPLNS+IS+ MRNG
Sbjct: 1  MFFVARSSFALRPTWIFSLYRRTSILLSTSTSCLQARHAPPTFSNLKPLNSEISSCMRNG 60

Query: 61 LVEEAQKLFDEMPRR 76
          LVEEAQKLFDEMP+R
Sbjct: 61 LVEEAQKLFDEMPQR 75

[Close]
BLAST of Bhi01G000469 vs. NCBI nr
Match: XP_008438461.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-22
Identity = 59/75 (78.67%), Postives = 63/75 (84.00%), Query Frame = 0 

Query: 1  MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHAPPTFQNLKPLNSKISNYMRNG 60
          MF LARPSFALRP WIFSLYLR SCSL TST R QA HA PTF NLK LNS ISN MR+G
Sbjct: 1  MFLLARPSFALRPKWIFSLYLRNSCSLTTSTCRSQASHATPTFPNLKLLNSDISNCMRSG 60

Query: 61 LVEEAQKLFDEMPRR 76
          LVE+AQ+LFDEMP+R
Sbjct: 61 LVEQAQRLFDEMPQR 75

The following BLAST results are available for this feature:
BLAST of Bhi01G000469 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi01G000469 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi01G000469 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L9N2|A0A0A0L9N2_CUCSA3.7e-2481.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134600 PE=4 SV=1[more]
tr|A0A1S3AWI6|A0A1S3AWI6_CUCME2.0e-2278.67pentatricopeptide repeat-containing protein At4g02750-like OS=Cucumis melo OX=36... [more]
tr|A0A2P5FAN4|A0A2P5FAN4_9ROSA1.5e-0649.35Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=... [more]
tr|A0A2P5ANQ9|A0A2P5ANQ9_PARAD1.5e-0648.05Tetratricopeptide-like helical domain containing protein OS=Parasponia andersoni... [more]
tr|A0A2P6QRH4|A0A2P6QRH4_ROSCH2.0e-0660.00Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinen... [more]
BLAST of Bhi01G000469 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022937344.15.0e-2582.67pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita moschata][more]
XP_022974531.11.9e-2482.67pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita maxima][more]
XP_004134397.15.5e-2481.33PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis s... [more]
XP_023538642.16.1e-2380.00pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp... [more]
XP_008438461.13.0e-2278.67PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis m... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi01M000469Bhi01M000469mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 234..263
e-value: 9.8E-6
score: 23.4
coord: 171..201
e-value: 1.9E-5
score: 22.5
coord: 140..167
e-value: 8.2E-7
score: 26.8
coord: 109..140
e-value: 2.2E-5
score: 22.3
coord: 78..108
e-value: 1.8E-6
score: 25.8
coord: 265..291
e-value: 0.0023
score: 16.0
coord: 202..228
e-value: 1.1E-7
score: 29.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 140..168
e-value: 7.4E-9
score: 35.2
coord: 358..384
e-value: 0.057
score: 13.6
coord: 109..138
e-value: 4.3E-5
score: 23.4
coord: 78..107
e-value: 3.1E-7
score: 30.1
coord: 234..263
e-value: 1.3E-6
score: 28.2
coord: 265..292
e-value: 0.011
score: 15.8
coord: 53..77
e-value: 5.2E-5
score: 23.1
coord: 327..353
e-value: 0.013
score: 15.6
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 200..227
e-value: 8.0E-9
score: 35.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 200..234
score: 11.783
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 111..137
score: 5.799
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 76..110
score: 10.83
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 235..261
score: 7.015
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 262..292
score: 8.67
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 45..75
score: 8.769
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 324..358
score: 7.739
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 293..323
score: 5.459
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 138..172
score: 11.827
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 173..199
score: 6.358
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 137..229
e-value: 7.7E-25
score: 90.1
coord: 323..388
e-value: 9.1E-7
score: 30.7
coord: 25..136
e-value: 1.3E-20
score: 76.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 230..322
e-value: 2.7E-15
score: 58.2
NoneNo IPR availablePANTHERPTHR24015:SF461SUBFAMILY NOT NAMEDcoord: 91..180
coord: 44..93
coord: 178..283
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 44..93
coord: 178..283
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 91..180
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 236..339
NoneNo IPR availablePANTHERPTHR24015:SF461SUBFAMILY NOT NAMEDcoord: 236..339

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Bhi01G000469Csa3G134600Cucumber (Chinese Long) v2cuwgoB293
Bhi01G000469MELO3C006375Melon (DHL92) v3.5.1mewgoB545
Bhi01G000469CSPI03G11550Wild cucumber (PI 183967)cpiwgoB292
Bhi01G000469Cucsa.255800Cucumber (Gy14) v1cgywgoB517
Bhi01G000469CmaCh06G012900Cucurbita maxima (Rimu)cmawgoB1022
Bhi01G000469CmoCh06G012980Cucurbita moschata (Rifu)cmowgoB1017
Bhi01G000469Lsi05G017730Bottle gourd (USVL1VR-Ls)lsiwgoB438
Bhi01G000469Cp4.1LG08g03160Cucurbita pepo (Zucchini)cpewgoB1108
Bhi01G000469CsGy3G011620Cucumber (Gy14) v2cgybwgoB261
Bhi01G000469MELO3C006375.2Melon (DHL92) v3.6.1medwgoB548
Bhi01G000469Carg06250Silver-seed gourdcarwgoB1116
Bhi01G000469CsaV3_3G011670Cucumber (Chinese Long) v3cucwgoB295
Bhi01G000469Cla021483Watermelon (97103) v1wgowmB218
Bhi01G000469Cla97C05G084610Watermelon (97103) v2wgowmbB195
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi01G000469Cucumber (Chinese Long) v3cucwgoB288
Bhi01G000469Cucumber (Chinese Long) v2cuwgoB284
Bhi01G000469Bottle gourd (USVL1VR-Ls)lsiwgoB433
Bhi01G000469Melon (DHL92) v3.6.1medwgoB542
Bhi01G000469Melon (DHL92) v3.5.1mewgoB540
Bhi01G000469Watermelon (Charleston Gray)wcgwgoB439
Bhi01G000469Watermelon (Charleston Gray)wcgwgoB443
Bhi01G000469Watermelon (97103) v2wgowmbB191
Bhi01G000469Watermelon (97103) v1wgowmB212
Bhi01G000469Cucumber (Gy14) v2cgybwgoB279
Bhi01G000469Wild cucumber (PI 183967)cpiwgoB284