Bhi01G000469 (gene) Wax gourd

Overview
NameBhi01G000469
Typegene
OrganismBenincasa hispida (Wax gourd)
Descriptionpentatricopeptide repeat-containing protein At4g02750-like
Locationchr1 : 11961604 .. 11964418 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATTTCCACAATATCGGTAACACGTTTCTGTCGATATATGTATGTTTCAGACTCTGTCTGAAGGCTTCCGCGGGAAGGCCACGGCAATTGTTTGTTCATAGCTTGACACGCTTGGAATTGGCGAAACCTCAGGCGAAAACTATATATATTACCCACTCGGTTCACCTCTCTTCCACTCTTGTTGTTTCTAAACTAATGGAGAATGTTCTTTTTAGCTCGGCCCTCATTTGCTCTTCGACCCATATGGATCTTCTCTCTATATCTCAGGAAATCATGCTCTCTTGCTACTTCGACCTATCGCTTGCAAGCCCGTCATGCTCCACCAACGTTTCAAAATTTAAAGCCCCTCAATTCCAAGATCTCAAACTATATGAGAAATGGGCTAGTGGAAGAAGCCCAGAAACTGTTCGACGAAATGCCTCGACGAAATGTTGTGACTTGGAACGCCATGATTCGTGGGTACTTCTTGAATGGGCGGTGTGGTGATGGGATTAGCTTGTTTCGTCGAATGCCCGAGCGTGATGTTTTCTCTTATAATACGGTGATTGGTGGGTTGATGCAATGTGGGGATGTTGATGGTGCTAAGGATATTTTTTATGTAATGCCGTCTAGAGATGTTGTGAGTTGGAATTCAATGATTGCGGGATGTATTCGGAATGGGTTACTAGAGGAAGCGATTGAGCTGTTTGATTACATGCCTGTGAAAGATGTAATTTCTTGGAACTTGATAATTGGTGGGCTTGTAAATTGCGGCAAACTTGATTCGGCTGAAGAGTACTTTTGCAAAATGAGCAGGAGGGATCTTGTGTCATGGACCATCATGATATCGGGGCTTTCCCGTGCTGGACGGCTTGATGAAGCGAGGGAGCTTTTCGATAACATGCCCATGAAAGATACTCGAGTATGGAATGCGATGATGGCCGGATATATAGAGAATGGGCGGATTGAAATGGCAGAGGAGTTGTTTGGGATAATGCCTGAACGAAACTTTGATTGTTGGAACGATTTAGTTAACGGGTTGGTTGGAAGCCAAAGGGTTGATGATGCTAGGAAGCTTTTTATGGAAATGCCAGAGAAATGCCAGAAAACATGGAACAGTATTGTGCTGGCATACATAAGAAATGGGCTGGTTTTACAAACTCATGCACTTCTTGAAAAAATACCATATGGTAATATAGCTTCGTGGACTAATTTGATTGTGGGATATTTTGGGATTGGTGAAGTTAGAATGGCAGTGGGGATTTTTGAATCGATGCAGTACAAAGATGCAACTGTGTGGAATGCTACAATATTTGGATTGGGAGAAAACGATGAAGGTGAGGAAGGTTTGAAGCTCTTTACTAGAATGATAAGGTTAGGTCCACATCTTGATAAAGCTACATTTACGAGTGTTTTAACAATTTGTTCTGACCTGGAAACTTTGCAGCTTGGTAGACAAACACATGCACTTATTATAAAAGAAGGATTCAATGGCTATGTTGCGGTCTCAAATGCTATGGTTAATATGTATGCAAGATGTGGAAATATGGATTGTGCCTTGGTGGAGTTCTCTTCCATGTCGAACAGGGATGTAATTTCCTGGAATTCTATCATTTGTGGTTTTGCTCACCATGGAAATGGCGAAGAAGCTCTGAAAATGTTTGAAAAAATGAGATTAGCTAACATAGAACCCAATCATATAACCTTTATTGGTGTTCTATCTGCCTGTAGCCATAAAGGTCTGGTGGACCAGGGTAGATATTATTTCGATTTTATGAAAAATGAATGTTCTCTTCAGCCATTGATTGAGCATTATACATGCTTAGTTGACTTGTTTGGGAGATTTGGGCTTATTGATGAGGCATTATGTTTTCTAGTCGAAATGAAAGAAGAGGAAATTGAAGTTCCTCCGAGTGTCTGGGGGGCTTTGCTTGGAGCTTGCAGAATCCATAATAATTATGATGCAGGGATGATTGCAGGTGAAAAGGTCCTGGAAAAAGAGCCTCATAACTCTGGAGTGTATTTGATTTTAGCAGAAATGTATTTGAGAAGTGGGAAAAGAGAAAATGCCGAAAGGATTTTGGCAAGAATGAAGAATAATGGAGTTAAGAAACAACCAGGGTGTAGTTGGATTGAAGTAAACAATAGTGGGTACGTCTTTCTTTCTGGAGATCGTTCAAATCCTCATTTTGATAGAATCTGTTATGTTGTAAAGTTGTTAAATCTGGAGATAAATGGAATTCTAAAATGACAGAAGCTGAGTTGCAAACATAGCGATGAAAAATGCATATCAAGATCGGTTTTGTAGCAATGTAAGTGGAGAGTTTTGTTGGTTGCTAATAGAACTTCATTCGTCTAAAGTTTTCAAGTTCAAAACATCTCAGGCTACATGGATAAAAAGTACTTTATGTTAGTGCGGAAGCTGATTCCAAGCTTTGATATGAACGAGGAATCGGTTGCTGAACAATTAGACAGAGCACCACAATGATACTAAAAGACTGGACTCAAGTGTTATATATTTGGCCTATTGAAAGGTAACACGCCGGAAATCATCAGCCCAAGTACTGGTCTCTTGTTTCTAGTGAGTTGTCTTTGACATGAAGCTGCTGCCTCTGTAGGCCGTACCATTCTTTCCAATGCTTCGACATTTACTATCAGCAGTCTCCTTGGATCTCCTCGAGGAAATGGGATTCTCATTGGCACTGTGGCTAGCGATGATCTTACATTGTGAGTGTCTGGACTGGACTGAATTGTGATTCTTCAAAACTGACGGTTTTTCAGTTGTTTTTCTGTTTTTCTTCCCAATCATTAGATCATTTTCTGAAATAGAATATT

mRNA sequence

TAATTTCCACAATATCGGTAACACGTTTCTGTCGATATATGTATGTTTCAGACTCTGTCTGAAGGCTTCCGCGGGAAGGCCACGGCAATTGTTTGTTCATAGCTTGACACGCTTGGAATTGGCGAAACCTCAGGCGAAAACTATATATATTACCCACTCGGTTCACCTCTCTTCCACTCTTGTTGTTTCTAAACTAATGGAGAATGTTCTTTTTAGCTCGGCCCTCATTTGCTCTTCGACCCATATGGATCTTCTCTCTATATCTCAGGAAATCATGCTCTCTTGCTACTTCGACCTATCGCTTGCAAGCCCGTCATGCTCCACCAACGTTTCAAAATTTAAAGCCCCTCAATTCCAAGATCTCAAACTATATGAGAAATGGGCTAGTGGAAGAAGCCCAGAAACTGTTCGACGAAATGCCTCGACGAAATGTTGTGACTTGGAACGCCATGATTCGTGGGTACTTCTTGAATGGGCGGTGTGGTGATGGGATTAGCTTGTTTCGTCGAATGCCCGAGCGTGATGTTTTCTCTTATAATACGGTGATTGGTGGGTTGATGCAATGTGGGGATGTTGATGGTGCTAAGGATATTTTTTATGTAATGCCGTCTAGAGATGTTGTGAGTTGGAATTCAATGATTGCGGGATGTATTCGGAATGGGTTACTAGAGGAAGCGATTGAGCTGTTTGATTACATGCCTGTGAAAGATGTAATTTCTTGGAACTTGATAATTGGTGGGCTTGTAAATTGCGGCAAACTTGATTCGGCTGAAGAGTACTTTTGCAAAATGAGCAGGAGGGATCTTGTGTCATGGACCATCATGATATCGGGGCTTTCCCGTGCTGGACGGCTTGATGAAGCGAGGGAGCTTTTCGATAACATGCCCATGAAAGATACTCGAGTATGGAATGCGATGATGGCCGGATATATAGAGAATGGGCGGATTGAAATGGCAGAGGAGTTGTTTGGGATAATGCCTGAACGAAACTTTGATTGTTGGAACGATTTAGTTAACGGGTTGGTTGGAAGCCAAAGGGTTGATGATGCTAGGAAGCTTTTTATGGAAATGCCAGAGAAATGCCAGAAAACATGGAACAGTATTGTGCTGGCATACATAAGAAATGGGCTGGTTTTACAAACTCATGCACTTCTTGAAAAAATACCATATGGTAATATAGCTTCGTGGACTAATTTGATTGTGGGATATTTTGGGATTGGTGAAGTTAGAATGGCAGTGGGGATTTTTGAATCGATGCAGTACAAAGATGCAACTGTGTGGAATGCTACAATATTTGGATTGGGAGAAAACGATGAAGGTGAGGAAGGTTTGAAGCTCTTTACTAGAATGATAAGCTTGGTAGACAAACACATGCACTTATTATAAAAGAAGGATTCAATGGCTATGTTGCGGTCTCAAATGCTATGGTTAATATGTATGCAAGATGTGGAAATATGGATTGTGCCTTGGTGGAGTTCTCTTCCATGTCGAACAGGGATGTAATTTCCTGGAATTCTATCATTTGTGGTTTTGCTCACCATGGAAATGGCGAAGAAGCTCTGAAAATGTTTGAAAAAATGAGATTAGCTAACATAGAACCCAATCATATAACCTTTATTGGTGTTCTATCTGCCTGTAGCCATAAAGGTCTGGTGGACCAGGGTAGATATTATTTCGATTTTATGAAAAATGAATGTTCTCTTCAGCCATTGATTGAGCATTATACATGCTTAGTTGACTTGTTTGGGAGATTTGGGCTTATTGATGAGGCATTATGTTTTCTAGTCGAAATGAAAGAAGAGGAAATTGAAGTTCCTCCGAGTGTCTGGGGGGCTTTGCTTGGAGCTTGCAGAATCCATAATAATTATGATGCAGGGATGATTGCAGGTGAAAAGGTCCTGGAAAAAGAGCCTCATAACTCTGGAGTGTATTTGATTTTAGCAGAAATGTATTTGAGAAGTGGGAAAAGAGAAAATGCCGAAAGGATTTTGGCAAGAATGAAGAATAATGGAGTTAAGAAACAACCAGGGTGTAGTTGGATTGAAGTAAACAATAGTGGGTACGTCTTTCTTTCTGGAGATCGTTCAAATCCTCATTTTGATAGAATCTGTTATGTTGTAAAGTTGTTAAATCTGGAGATAAATGGAATTCTAAAATGACAGAAGCTGAGTTGCAAACATAGCGATGAAAAATGCATATCAAGATCGGTTTTGTAGCAATGTAAGTGGAGAGTTTTGTTGGTTGCTAATAGAACTTCATTCGTCTAAAGTTTTCAAGTTCAAAACATCTCAGGCTACATGGATAAAAAGTACTTTATGTTAGTGCGGAAGCTGATTCCAAGCTTTGATATGAACGAGGAATCGGTTGCTGAACAATTAGACAGAGCACCACAATGATACTAAAAGACTGGACTCAAGTGTTATATATTTGGCCTATTGAAAGGTAACACGCCGGAAATCATCAGCCCAAGTACTGGTCTCTTGTTTCTAGTGAGTTGTCTTTGACATGAAGCTGCTGCCTCTGTAGGCCGTACCATTCTTTCCAATGCTTCGACATTTACTATCAGCAGTCTCCTTGGATCTCCTCGAGGAAATGGGATTCTCATTGGCACTGTGGCTAGCGATGATCTTACATTGTGAGTGTCTGGACTGGACTGAATTGTGATTCTTCAAAACTGACGGTTTTTCAGTTGTTTTTCTGTTTTTCTTCCCAATCATTAGATCATTTTCTGAAATAGAATATT

Coding sequence (CDS)

ATGTTCTTTTTAGCTCGGCCCTCATTTGCTCTTCGACCCATATGGATCTTCTCTCTATATCTCAGGAAATCATGCTCTCTTGCTACTTCGACCTATCGCTTGCAAGCCCGTCATGCTCCACCAACGTTTCAAAATTTAAAGCCCCTCAATTCCAAGATCTCAAACTATATGAGAAATGGGCTAGTGGAAGAAGCCCAGAAACTGTTCGACGAAATGCCTCGACGAAATGTTGTGACTTGGAACGCCATGATTCGTGGGTACTTCTTGAATGGGCGGTGTGGTGATGGGATTAGCTTGTTTCGTCGAATGCCCGAGCGTGATGTTTTCTCTTATAATACGGTGATTGGTGGGTTGATGCAATGTGGGGATGTTGATGGTGCTAAGGATATTTTTTATGTAATGCCGTCTAGAGATGTTGTGAGTTGGAATTCAATGATTGCGGGATGTATTCGGAATGGGTTACTAGAGGAAGCGATTGAGCTGTTTGATTACATGCCTGTGAAAGATGTAATTTCTTGGAACTTGATAATTGGTGGGCTTGTAAATTGCGGCAAACTTGATTCGGCTGAAGAGTACTTTTGCAAAATGAGCAGGAGGGATCTTGTGTCATGGACCATCATGATATCGGGGCTTTCCCGTGCTGGACGGCTTGATGAAGCGAGGGAGCTTTTCGATAACATGCCCATGAAAGATACTCGAGTATGGAATGCGATGATGGCCGGATATATAGAGAATGGGCGGATTGAAATGGCAGAGGAGTTGTTTGGGATAATGCCTGAACGAAACTTTGATTGTTGGAACGATTTAGTTAACGGGTTGGTTGGAAGCCAAAGGGTTGATGATGCTAGGAAGCTTTTTATGGAAATGCCAGAGAAATGCCAGAAAACATGGAACAGTATTGTGCTGGCATACATAAGAAATGGGCTGGTTTTACAAACTCATGCACTTCTTGAAAAAATACCATATGGTAATATAGCTTCGTGGACTAATTTGATTGTGGGATATTTTGGGATTGGTGAAGTTAGAATGGCAGTGGGGATTTTTGAATCGATGCAGTACAAAGATGCAACTGTGTGGAATGCTACAATATTTGGATTGGGAGAAAACGATGAAGGTGAGGAAGGTTTGAAGCTCTTTACTAGAATGATAAGCTTGGTAGACAAACACATGCACTTATTATAA

Protein sequence

MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHAPPTFQNLKPLNSKISNYMRNGLVEEAQKLFDEMPRRNVVTWNAMIRGYFLNGRCGDGISLFRRMPERDVFSYNTVIGGLMQCGDVDGAKDIFYVMPSRDVVSWNSMIAGCIRNGLLEEAIELFDYMPVKDVISWNLIIGGLVNCGKLDSAEEYFCKMSRRDLVSWTIMISGLSRAGRLDEARELFDNMPMKDTRVWNAMMAGYIENGRIEMAEELFGIMPERNFDCWNDLVNGLVGSQRVDDARKLFMEMPEKCQKTWNSIVLAYIRNGLVLQTHALLEKIPYGNIASWTNLIVGYFGIGEVRMAVGIFESMQYKDATVWNATIFGLGENDEGEEGLKLFTRMISLVDKHMHLL
Homology
[Close]
BLAST of Bhi01G000469 vs. TrEMBL
Match: tr|A0A0A0L9N2|A0A0A0L9N2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134600 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.7e-24
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 0 

Query: 1  MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHAPPTFQNLKPLNSKISNYMRNG 60
          MF  ARPSFALRP WIFSLYLR SCSL TST RLQA HAPPTF NLK LNS+ISN MRNG
Sbjct: 1  MFLFARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASHAPPTFPNLKLLNSEISNCMRNG 60

Query: 61 LVEEAQKLFDEMPRR 76
          LVE+AQKLFD MP+R
Sbjct: 61 LVEQAQKLFDGMPQR 75

[Close]
BLAST of Bhi01G000469 vs. TrEMBL
Match: tr|A0A1S3AWI6|A0A1S3AWI6_CUCME (pentatricopeptide repeat-containing protein At4g02750-like OS=Cucumis melo OX=3656 GN=LOC103483546 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.0e-22
Identity = 59/75 (78.67%), Postives = 63/75 (84.00%), Query Frame = 0 

Query: 1  MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHAPPTFQNLKPLNSKISNYMRNG 60
          MF LARPSFALRP WIFSLYLR SCSL TST R QA HA PTF NLK LNS ISN MR+G
Sbjct: 1  MFLLARPSFALRPKWIFSLYLRNSCSLTTSTCRSQASHATPTFPNLKLLNSDISNCMRSG 60

Query: 61 LVEEAQKLFDEMPRR 76
          LVE+AQ+LFDEMP+R
Sbjct: 61 LVEQAQRLFDEMPQR 75

[Close]
BLAST of Bhi01G000469 vs. TrEMBL
Match: tr|A0A2P5FAN4|A0A2P5FAN4_9ROSA (Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_093630 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 0 

Query: 1  MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHA--PPTFQNLKPLNSKISNYMR 60
          +F  +    A + I   SL+L K  S AT+ + +Q  HA    T  NL+PLNSKIS+YMR
Sbjct: 2  LFSTSHIDHARKLIQTLSLHLIKPISTATTAF-IQHNHASQTQTLPNLRPLNSKISSYMR 61

Query: 61 NGLVEEAQKLFDEMPRR 76
           GLV++AQKLFD+MP+R
Sbjct: 62 YGLVDDAQKLFDKMPQR 77

[Close]
BLAST of Bhi01G000469 vs. TrEMBL
Match: tr|A0A2P5ANQ9|A0A2P5ANQ9_PARAD (Tetratricopeptide-like helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_314650 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0 

Query: 1  MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHA--PPTFQNLKPLNSKISNYMR 60
          +F  +    A + I   S++L K  S AT+ + +Q  HA    T  NL+P NSKIS+YMR
Sbjct: 2  LFSTSHIDHARKLIQTLSVHLVKPLSTATTAF-IQQNHASQTQTLPNLRPFNSKISSYMR 61

Query: 61 NGLVEEAQKLFDEMPRR 76
          +GLV+EAQKLFD+MP+R
Sbjct: 62 HGLVDEAQKLFDKMPQR 77

[Close]
BLAST of Bhi01G000469 vs. TrEMBL
Match: tr|A0A2P6QRH4|A0A2P6QRH4_ROSCH (Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0395421 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.0e-06
Identity = 36/60 (60.00%), Postives = 39/60 (65.00%), Query Frame = 0 

Query: 16 IFSLYLRKSCSLATSTYRLQARHAPPTFQNLKPLNSKISNYMRNGLVEEAQKLFDEMPRR 75
          + SL L KS   A +T   Q        QNLKPLNSKIS +MRNG VEEAQKLFDEMP R
Sbjct: 28 LLSLSLTKSLCTAAATSFFQT-------QNLKPLNSKISTHMRNGFVEEAQKLFDEMPHR 80

[Close]
BLAST of Bhi01G000469 vs. NCBI nr
Match: XP_022937344.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita moschata])

HSP 1 Score: 125.2 bits (313), Expect = 5.0e-25
Identity = 62/75 (82.67%), Postives = 67/75 (89.33%), Query Frame = 0 

Query: 1  MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHAPPTFQNLKPLNSKISNYMRNG 60
          MFF+ARPSFALRP WIFSLY R S  L+TSTY LQARHAPPTF NLKPLNS+ISN MRNG
Sbjct: 1  MFFVARPSFALRPTWIFSLYRRTSILLSTSTYCLQARHAPPTFSNLKPLNSEISNCMRNG 60

Query: 61 LVEEAQKLFDEMPRR 76
          LV+EAQKLFDEMP+R
Sbjct: 61 LVKEAQKLFDEMPQR 75

[Close]
BLAST of Bhi01G000469 vs. NCBI nr
Match: XP_022974531.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-24
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 0 

Query: 1  MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHAPPTFQNLKPLNSKISNYMRNG 60
          MFF+ARPSFALRP WIFSLY R S  L+TST  LQARHAPPTF NLKPLNS+ISN MRNG
Sbjct: 1  MFFVARPSFALRPTWIFSLYRRTSILLSTSTSCLQARHAPPTFSNLKPLNSEISNCMRNG 60

Query: 61 LVEEAQKLFDEMPRR 76
          LVEEAQKLFDEMP+R
Sbjct: 61 LVEEAQKLFDEMPQR 75

[Close]
BLAST of Bhi01G000469 vs. NCBI nr
Match: XP_004134397.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis sativus] >KGN56811.1 hypothetical protein Csa_3G134600 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 5.5e-24
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 0 

Query: 1  MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHAPPTFQNLKPLNSKISNYMRNG 60
          MF  ARPSFALRP WIFSLYLR SCSL TST RLQA HAPPTF NLK LNS+ISN MRNG
Sbjct: 1  MFLFARPSFALRPTWIFSLYLRNSCSLTTSTCRLQASHAPPTFPNLKLLNSEISNCMRNG 60

Query: 61 LVEEAQKLFDEMPRR 76
          LVE+AQKLFD MP+R
Sbjct: 61 LVEQAQKLFDGMPQR 75

[Close]
BLAST of Bhi01G000469 vs. NCBI nr
Match: XP_023538642.1 (pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.2 bits (295), Expect = 6.1e-23
Identity = 60/75 (80.00%), Postives = 65/75 (86.67%), Query Frame = 0 

Query: 1  MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHAPPTFQNLKPLNSKISNYMRNG 60
          MFF+AR SFALRP WIFSLY R S  L+TST  LQARHAPPTF NLKPLNS+IS+ MRNG
Sbjct: 1  MFFVARSSFALRPTWIFSLYRRTSILLSTSTSCLQARHAPPTFSNLKPLNSEISSCMRNG 60

Query: 61 LVEEAQKLFDEMPRR 76
          LVEEAQKLFDEMP+R
Sbjct: 61 LVEEAQKLFDEMPQR 75

[Close]
BLAST of Bhi01G000469 vs. NCBI nr
Match: XP_008438461.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-22
Identity = 59/75 (78.67%), Postives = 63/75 (84.00%), Query Frame = 0 

Query: 1  MFFLARPSFALRPIWIFSLYLRKSCSLATSTYRLQARHAPPTFQNLKPLNSKISNYMRNG 60
          MF LARPSFALRP WIFSLYLR SCSL TST R QA HA PTF NLK LNS ISN MR+G
Sbjct: 1  MFLLARPSFALRPKWIFSLYLRNSCSLTTSTCRSQASHATPTFPNLKLLNSDISNCMRSG 60

Query: 61 LVEEAQKLFDEMPRR 76
          LVE+AQ+LFDEMP+R
Sbjct: 61 LVEQAQRLFDEMPQR 75

The following BLAST results are available for this feature:
BLAST of Bhi01G000469 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi01G000469 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi01G000469 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L9N2|A0A0A0L9N2_CUCSA3.7e-2481.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134600 PE=4 SV=1[more]
tr|A0A1S3AWI6|A0A1S3AWI6_CUCME2.0e-2278.67pentatricopeptide repeat-containing protein At4g02750-like OS=Cucumis melo OX=36... [more]
tr|A0A2P5FAN4|A0A2P5FAN4_9ROSA1.5e-0649.35Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=... [more]
tr|A0A2P5ANQ9|A0A2P5ANQ9_PARAD1.5e-0648.05Tetratricopeptide-like helical domain containing protein OS=Parasponia andersoni... [more]
tr|A0A2P6QRH4|A0A2P6QRH4_ROSCH2.0e-0660.00Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinen... [more]
BLAST of Bhi01G000469 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022937344.15.0e-2582.67pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita moschata][more]
XP_022974531.11.9e-2482.67pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita maxima][more]
XP_004134397.15.5e-2481.33PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis s... [more]
XP_023538642.16.1e-2380.00pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp... [more]
XP_008438461.13.0e-2278.67PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cucumis m... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi01M000469Bhi01M000469mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 234..263
e-value: 9.8E-6
score: 23.4
coord: 171..201
e-value: 1.9E-5
score: 22.5
coord: 140..167
e-value: 8.2E-7
score: 26.8
coord: 109..140
e-value: 2.2E-5
score: 22.3
coord: 78..108
e-value: 1.8E-6
score: 25.8
coord: 265..291
e-value: 0.0023
score: 16.0
coord: 202..228
e-value: 1.1E-7
score: 29.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 140..168
e-value: 7.4E-9
score: 35.2
coord: 358..384
e-value: 0.057
score: 13.6
coord: 109..138
e-value: 4.3E-5
score: 23.4
coord: 78..107
e-value: 3.1E-7
score: 30.1
coord: 234..263
e-value: 1.3E-6
score: 28.2
coord: 265..292
e-value: 0.011
score: 15.8
coord: 53..77
e-value: 5.2E-5
score: 23.1
coord: 327..353
e-value: 0.013
score: 15.6
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 200..227
e-value: 8.0E-9
score: 35.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 200..234
score: 11.783
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 111..137
score: 5.799
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 76..110
score: 10.83
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 235..261
score: 7.015
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 262..292
score: 8.67
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 45..75
score: 8.769
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 324..358
score: 7.739
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 293..323
score: 5.459
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 138..172
score: 11.827
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 173..199
score: 6.358
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 137..229
e-value: 7.7E-25
score: 90.1
coord: 323..388
e-value: 9.1E-7
score: 30.7
coord: 25..136
e-value: 1.3E-20
score: 76.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 230..322
e-value: 2.7E-15
score: 58.2
NoneNo IPR availablePANTHERPTHR24015:SF461SUBFAMILY NOT NAMEDcoord: 91..180
coord: 44..93
coord: 178..283
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 44..93
coord: 178..283
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 91..180
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 236..339
NoneNo IPR availablePANTHERPTHR24015:SF461SUBFAMILY NOT NAMEDcoord: 236..339

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Bhi01G000469Csa3G134600Cucumber (Chinese Long) v2cuwgoB293
Bhi01G000469MELO3C006375Melon (DHL92) v3.5.1mewgoB545
Bhi01G000469CSPI03G11550Wild cucumber (PI 183967)cpiwgoB292
Bhi01G000469Cucsa.255800Cucumber (Gy14) v1cgywgoB517
Bhi01G000469CmaCh06G012900Cucurbita maxima (Rimu)cmawgoB1022
Bhi01G000469CmoCh06G012980Cucurbita moschata (Rifu)cmowgoB1017
Bhi01G000469Lsi05G017730Bottle gourd (USVL1VR-Ls)lsiwgoB438
Bhi01G000469Cp4.1LG08g03160Cucurbita pepo (Zucchini)cpewgoB1108
Bhi01G000469CsGy3G011620Cucumber (Gy14) v2cgybwgoB261
Bhi01G000469MELO3C006375.2Melon (DHL92) v3.6.1medwgoB548
Bhi01G000469Carg06250Silver-seed gourdcarwgoB1116
Bhi01G000469CsaV3_3G011670Cucumber (Chinese Long) v3cucwgoB295
Bhi01G000469Cla021483Watermelon (97103) v1wgowmB218
Bhi01G000469Cla97C05G084610Watermelon (97103) v2wgowmbB195
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi01G000469Melon (DHL92) v3.6.1medwgoB542
Bhi01G000469Melon (DHL92) v3.5.1mewgoB540
Bhi01G000469Watermelon (Charleston Gray)wcgwgoB439
Bhi01G000469Watermelon (Charleston Gray)wcgwgoB443
Bhi01G000469Watermelon (97103) v2wgowmbB191
Bhi01G000469Watermelon (97103) v1wgowmB212
Bhi01G000469Cucumber (Gy14) v2cgybwgoB279
Bhi01G000469Wild cucumber (PI 183967)cpiwgoB284
Bhi01G000469Cucumber (Chinese Long) v3cucwgoB288
Bhi01G000469Cucumber (Chinese Long) v2cuwgoB284
Bhi01G000469Bottle gourd (USVL1VR-Ls)lsiwgoB433