CsGy3G001160 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G001160
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionVacuolar protein sorting-associated protein 25
LocationChr3 : 855729 .. 860114 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCATGAGCTTGCGCTATAAGGTATTAGGTTAAGTCCCACAACTAACACATCCTTCATGTTTAGTTGCTAATGGGTGAGGTTAGAATCCTAAGCAAACGGTCGAGGATAAACATGTATCGAAATTTGAATTTTATGAATTTATGGATAAAATATCTAACATCCACAAATTTTTTTTAAAGTCACAAAATTGCTTCTATAATGAGAGTTTAGATAAAAGCTTTGAAAAACGAATATTTTCTTCCTTCGTTAATGTTCGTTGTCTACCCGGCAAAAAGAAAACCCTCACCTTAGTCTCCTTCTTCCTCACTCTCGCAACGTTCACTCCCCGCGAATACCGAGTGGCACGAACTCCGGTTGACGGCAATCGAACGGCGGCGACAAACACGATTTAGGTATTATTCATTTGTTCCTTTACCCTCTCTTCACTTCCATCTACGATCGCTCAGCGTTGTTTGATCTGAATATCGAAACACGCCATTTGAAGATTGTGATCACACGGGAACTCTGGAACTTCAGCGTTTTCGACATTCAGCTGAATCAAGATCCTGTGAAGGATTTGGAAGTCGATTCTTGAGTTTTGATTTCTCAGTTTATCGTTTTCTCTTACCCTGAAATCAGGCGGTCAATCATTTCGAACACGGCTGGATTTGATTACTGCACTTTTTTAACTTTGAAAATTTGAGTCACTAAATCTCGTTTTCTCTGCGCATCGTTGGTTCTGTGTCTTAATTTTTCATTTTCAATCATTAGATCGATGATTATGATTTTCTTACAGATGTAATAATGAGATTGGGATGACTTTCGAATCATGGAGTGTGTTTTGTTTGTAGTGTTTTGATTAGAGGATTTAAAGTGATCATGGATATTCTAAAACATTTGAGTAGTTTAGGAGTAGTTGTTCAATTTCTTCCAAAAATGTTCTTTACAGCACTTTTTTCAATTTCAAATCCTCCTGAAGTTCTGTGAAATCTTGCCTCGATTAATTTCACAAGCCATTTTACTGTAGGCAATAGCATGCTAGTCATGAAGTTGTTCAGTGTTTCTTCAACAATTTTGCATGTTTAAGTAGTTCCTCAGCCCCTATTTGATAGCCAGTTCAATCTCTTGGTTTGGTTTTTTATCATTGAAAATTAAACTTATAGTCACTTCTTTTACTTTTGGATTTCTTTGGTTTGTTATATTCCTTTTACAAATGTTTTCAAACCCAAGTCAAAGCAAACACTTGGTTTTGTTTTTTGAATTGAACTACCATGTAAAGAAATGGGGGAGAAATTAGGCGCAATTTTCAAGAACCAAATGGATCAAATGGGGTTCTTTTACATGTTAACTATATAGACCCCAAGAGGTGGTGCTCAATCATGGATCTCTTGTCTTCCAACAAAGTCAGACTTGATATTATGGTCTTTTTCAGTCTTGTATCCTGTTACTGTGAAGTTTTCATGCCATTTGATGTTTTTTAGAAATAGCTTCATCAGATGAAATTTATTGTTCGGTTCTCACCACTGATCTGATTCATAGAACACGAAAACTTGATTCTATTTTGACGTGTTCGTTTGCTATCATAATCGGGTACAGGATAAAATTAGAAGAGGAAAGCAACTTGCAGTTCATAACAAGTTTATATAGTTCTTTAATGACAAGGTTTTATTAGTTTGCAAGTCTCTAGTGTCATCGTATCATTTATGAATCTCTGCGTTCTTTTGTCTCTTCATTTTATCTTTAAATTTCTTTCTGAAATTTCTCAGTTCTAGAGATAAGATGCTTCCATAGAACTCAACTCACTTCCAGAGGACACAATAGAGAAGATGCAGAAATTGGGAGATTTCAAGCTACCGCATTTCTTCAATTATCCTCCATATTTCACGTAATGTTCACCATCTGTTTCATTTATTATTCTTTTTACATCATTATTAGCAACTTGTAAGCTGTGTGAGTCAATTTCTGATGATGTTGATATCTTGGTTTTGTCGACAATTTCCTAAGTGAAGAAAACTAACAGGATACAGTATTTACAACCTATAATTTTCCCACCAGCCTCATATATACGAATGTGCTAGTTGTACCTTACCGGAATGTTGATTGTTTCACTTGTCTTCAGTTGCATATATAACCTTTTTATTGCATGTCATCTCAGTTTGCAACCAGTGAGGGACACCCGTGAGAAGCAAATTCAACTTTGGAAGGAACTTATCCTTGATTACTGCCGAACGCAAAAGATATTTGTCATTGGACTTGAAGAGGACTTTCCTCTATTTTCAAATTCTGTGATTGAAAGTAAATTTCATGGCCTTTTTTGGTCCTAATTGGGTGTTAAAACCTTTTTGTGTTTTAGACTCAGTTGCATAGCTTTGTATTACTGTTTCAGTTGTTTGATGTATTTTATAGCGTGGTTGTGATGCTACAGGATCTCTCAGTCATGAAGCTAGACAAGCTTTTATCTCAGCTTTAGTTTCAGATGGTTAGGGCCTGCTTGTTTAGTTCGATAATTCTATCTGTTTACAGTTCCCATTCTCTTTCATGGGGAAAAAAACTGATACGTGTTCATTTTAATGGTCCTTATAGGTCGTGCAGAATGGCTGGATAAAGGACATAGGAAATGCCTTATTTTATGGCACCGGATTCAAGATTGGGCTGACATCATTTTGCACTTTGTAAGACTAATTACTTTGGTTAAATTAGTCTCAAATTTTTGGTCTATTTGTCCTTGAACTTTAAAAAATGTCCAATAGGTCTTAGTTCAATTCTAAGTTTCATAGATCCTTGAAAATTTTGAAAATGTTAAAAATTATGCGATCCATTAGGTGTAAATTTGGATTTATGCTAATGGAACTCTAAATCAAAGGTTCGGAGTCTAAATTTGTAAATTTGAAAGTTCAAGGTCCAAATAGGCACAAGTTTCAAAAGTTAAATTAAGAGACTGAATTTATTACTTAACCAAATACCATTTTAACTGCCATAGTTATCAGTAAGTTTGAAATGATTTTGAAAGAGTAAAAGTTGCTTAATTCCATTGAAAGAAGTAGGTAAAATTCCACAAGTTTTTTGATAGAAATCAGAAGTGCTTTGAAAATTCGTTATGCTTAAATTGTTTCTTAATAAATAGGTGAAAAATAATGGACTTGAAGATAGTGTTATGACAGTCGAGGAAATACGTTCAGGAGTTGAATCTAGAGGAACAGGTACTTTCTTTGCTTATGTTCTCAAGGTACTAAATGCCCACCTTTCGATGATAATTAATGGAATGAAATAATGAGATTAAACTGCTGATCATTTCACTTTTTAAATATGTTAATATATTTTATTTATTTTATGTTCTCGTTAGTGCCATTTTATATGTTTCTGAATGTGTTCCCAAAGGTGATATTAAAACATTTATTGCACACTGTATAGCTTTTGATAGAATAAGGACATTCTTGAAACAAGGGACAGTTCATAGTTTATCTTTTTTAGCCAATTTGTGTATACAAATTCATTAGCTCAGCCTTAATTGACATGTAATATCTTCATACCTCACATTTGTTGCGTTAAACGTTGTTAGAAACGTATAAGTAGAGTGATGATGTATATTTGTTATTTGCCATGAGCACAGCGTAGCTATAGTTGACATGTACTTCTCTTTGAGCCCCCCAGGCCATACCTTACTTTTTGTTGAACTAAAACTTAATGTAAAAGATTTTACGTAAACATTTCCTCACCAGATCTGTTGTAGAGACAATATATGCTTGCTTTCTGCAAAACTACGTAGCTGTTTTGTGCTTAAACATTACCATATCTTGAAACAGCAATTTTGCTTCATTATAATTTGTAAGAAAAGAGTTATTTGGTTTTGTGTTTTATAAATCAGAGCTTGAAGGGATTGATCGTACGATATTAATGAGAGCATTGAAGCTACTTGAACAAAAGGGGAAGCTTGCAATTTTCAAAGGTTCTTCGACAGATGATGAAGGCATTAAATTCTCTGTATAAACTACCAATGTTTATTATTCACATTGACTGCCAATCTTTCTTTTTTCAACACTTCTAAATGCAACTTTTCATTTAGTTTCCCCCCAATTCCAACTGGGATTGATGGGATTATAGGTTCTTGGTGCAGTTCATTGAATGTAACCAAGTGGACCTCCCAATTGAACTTAAAAGGACCTAAGCTTGGGAGTGAGGATTAAAATATTGATGTCGATATTGATATTAAGGTCTTAAACTTACAGATATATCGACCCAGCGACATATATTTTCATCCTTTTTTCGCGAGTGCTTTGGAAAATATTTGTTGTGCATTGTTGAAAAAAGAACTAAAAACAATCATATAATCCTCCTGTTATTTGGATTGGTTTATGAGATGTGTTTAATTTTTTTAAAAATAAAATTATAGAAATTTTAGGGTAAAA

mRNA sequence

ATCATGAGCTTGCGCTATAAGGTATTAGGTTAAGTCCCACAACTAACACATCCTTCATGTTTAGTTGCTAATGGGTGAGGTTAGAATCCTAAGCAAACGGTCGAGGATAAACATGTATCGAAATTTGAATTTTATGAATTTATGGATAAAATATCTAACATCCACAAATTTTTTTTAAAGTCACAAAATTGCTTCTATAATGAGAGTTTAGATAAAAGCTTTGAAAAACGAATATTTTCTTCCTTCGTTAATGTTCGTTGTCTACCCGGCAAAAAGAAAACCCTCACCTTAGTCTCCTTCTTCCTCACTCTCGCAACGTTCACTCCCCGCGAATACCGAGTGGCACGAACTCCGGTTGACGGCAATCGAACGGCGGCGACAAACACGATTTAGTTCTAGAGATAAGATGCTTCCATAGAACTCAACTCACTTCCAGAGGACACAATAGAGAAGATGCAGAAATTGGGAGATTTCAAGCTACCGCATTTCTTCAATTATCCTCCATATTTCACTTTGCAACCAGTGAGGGACACCCGTGAGAAGCAAATTCAACTTTGGAAGGAACTTATCCTTGATTACTGCCGAACGCAAAAGATATTTGTCATTGGACTTGAAGAGGACTTTCCTCTATTTTCAAATTCTCGTGGTTGTGATGCTACAGGATCTCTCAGTCATGAAGCTAGACAAGCTTTTATCTCAGCTTTAGTGAAAAATAATGGACTTGAAGATAGTGTTATGACAGTCGAGGAAATACGTTCAGGAGTTGAATCTAGAGGAACAGAGCTTGAAGGGATTGATCGTACGATATTAATGAGAGCATTGAAGCTACTTGAACAAAAGGGGAAGCTTGCAATTTTCAAAGGTTCTTCGACAGATGATGAAGGCATTAAATTCTCTGTATAAACTACCAATGTTTATTATTCACATTGACTGCCAATCTTTCTTTTTTCAACACTTCTAAATGCAACTTTTCATTTAGTTTCCCCCCAATTCCAACTGGGATTGATGGGATTATAGGTTCTTGGTGCAGTTCATTGAATGTAACCAAGTGGACCTCCCAATTGAACTTAAAAGGACCTAAGCTTGGGAGTGAGGATTAAAATATTGATGTCGATATTGATATTAAGGTCTTAAACTTACAGATATATCGACCCAGCGACATATATTTTCATCCTTTTTTCGCGAGTGCTTTGGAAAATATTTGTTGTGCATTGTTGAAAAAAGAACTAAAAACAATCATATAATCCTCCTGTTATTTGGATTGGTTTATGAGATGTGTTTAATTTTTTTAAAAATAAAATTATAGAAATTTTAGGGTAAAA

Coding sequence (CDS)

ATGCAGAAATTGGGAGATTTCAAGCTACCGCATTTCTTCAATTATCCTCCATATTTCACTTTGCAACCAGTGAGGGACACCCGTGAGAAGCAAATTCAACTTTGGAAGGAACTTATCCTTGATTACTGCCGAACGCAAAAGATATTTGTCATTGGACTTGAAGAGGACTTTCCTCTATTTTCAAATTCTCGTGGTTGTGATGCTACAGGATCTCTCAGTCATGAAGCTAGACAAGCTTTTATCTCAGCTTTAGTGAAAAATAATGGACTTGAAGATAGTGTTATGACAGTCGAGGAAATACGTTCAGGAGTTGAATCTAGAGGAACAGAGCTTGAAGGGATTGATCGTACGATATTAATGAGAGCATTGAAGCTACTTGAACAAAAGGGGAAGCTTGCAATTTTCAAAGGTTCTTCGACAGATGATGAAGGCATTAAATTCTCTGTATAA

Protein sequence

MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLFSNSRGCDATGSLSHEARQAFISALVKNNGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKFSV
Homology
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BLAST of CsGy3G001160 vs. NCBI nr
Match: XP_004146105.1 (PREDICTED: vacuolar protein sorting-associated protein 25 isoform X1 [Cucumis sativus] >KGN55713.1 hypothetical protein Csa_3G006740 [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 8.4e-66
Identity = 142/182 (78.02%), Postives = 142/182 (78.02%), Query Frame = 0 

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60

Query: 61  SNSRGCDATGSLSHEARQAFISAL---------------------------------VKN 120
           SNS       SLSHEARQAFISAL                                 VKN
Sbjct: 61  SNS---VIERSLSHEARQAFISALVSDGRAEWLDKGHRKCLILWHRIQDWADIILHFVKN 120

Query: 121 NGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 150
           NGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF
Sbjct: 121 NGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 179

[Close]
BLAST of CsGy3G001160 vs. NCBI nr
Match: XP_008448627.1 (PREDICTED: vacuolar protein sorting-associated protein 25 isoform X1 [Cucumis melo])

HSP 1 Score: 257.3 bits (656), Expect = 3.2e-65
Identity = 140/182 (76.92%), Postives = 142/182 (78.02%), Query Frame = 0 

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60

Query: 61  SNSRGCDATGSLSHEARQAFISAL---------------------------------VKN 120
           SNS       SLSHEARQAF+SAL                                 VKN
Sbjct: 61  SNS---VIERSLSHEARQAFLSALVSDGRAEWLDKGHRKCLILWHRIQDWADIILHFVKN 120

Query: 121 NGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 150
           NGLEDSVMTVEEIRSGVESRGTEL+GIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF
Sbjct: 121 NGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 179

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BLAST of CsGy3G001160 vs. NCBI nr
Match: XP_022145259.1 (vacuolar protein sorting-associated protein 25 [Momordica charantia])

HSP 1 Score: 251.1 bits (640), Expect = 2.3e-63
Identity = 134/182 (73.63%), Postives = 142/182 (78.02%), Query Frame = 0 

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEE+FP+F
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPIF 60

Query: 61  SNSRGCDATGSLSHEARQAFISAL---------------------------------VKN 120
           +N+       SLSHEAR+AF+SAL                                 VKN
Sbjct: 61  TNTA---IERSLSHEAREAFLSALVSDGRAEWLDKGHRKCLILWHRIQDWADIILHFVKN 120

Query: 121 NGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 150
           NGLEDSVMTVEE+RSGVESRGTEL+GIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF
Sbjct: 121 NGLEDSVMTVEEMRSGVESRGTELQGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 179

[Close]
BLAST of CsGy3G001160 vs. NCBI nr
Match: XP_022949655.1 (vacuolar protein sorting-associated protein 25 [Cucurbita moschata] >XP_023005573.1 vacuolar protein sorting-associated protein 25 [Cucurbita maxima])

HSP 1 Score: 249.6 bits (636), Expect = 6.7e-63
Identity = 136/182 (74.73%), Postives = 140/182 (76.92%), Query Frame = 0 

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPV+DTREKQIQLWKELILDYCRTQKIFVIGLEE+FPLF
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLF 60

Query: 61  SNSRGCDATGSLSHEARQAFISAL---------------------------------VKN 120
           SNS       SLSHEAR AF+SAL                                 VKN
Sbjct: 61  SNS---VIERSLSHEARVAFLSALVSDGRAEWLDKGHRKCLILWHRIQDWADIILHFVKN 120

Query: 121 NGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 150
           NGLEDSVMTVEEIRSGVESRGTEL+GIDRTILMRALK LEQKGKLAIFKGSSTDDEGIKF
Sbjct: 121 NGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQLEQKGKLAIFKGSSTDDEGIKF 179

[Close]
BLAST of CsGy3G001160 vs. NCBI nr
Match: XP_023540532.1 (vacuolar protein sorting-associated protein 25 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.1 bits (632), Expect = 1.9e-62
Identity = 135/182 (74.18%), Postives = 139/182 (76.37%), Query Frame = 0 

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPV+DTREKQIQLWKELILDYCRTQKIFVIGLEE+FPLF
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLF 60

Query: 61  SNSRGCDATGSLSHEARQAFISAL---------------------------------VKN 120
           SNS       SLSHEAR  F+SAL                                 VKN
Sbjct: 61  SNS---VIERSLSHEARVVFLSALVSDGRAEWLDKGHRKCLILWHRIQDWADIILHFVKN 120

Query: 121 NGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 150
           NGLEDSVMTVEEIRSGVESRGTEL+GIDRTILMRALK LEQKGKLAIFKGSSTDDEGIKF
Sbjct: 121 NGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQLEQKGKLAIFKGSSTDDEGIKF 179

[Close]
BLAST of CsGy3G001160 vs. TAIR10
Match: AT4G19003.2 (E2F/DP family winged-helix DNA-binding domain)

HSP 1 Score: 230.7 bits (587), Expect = 5.8e-61
Identity = 122/182 (67.03%), Postives = 135/182 (74.18%), Query Frame = 0 

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60
           MQKL DFKLP FFNYPPYFTLQPVRDTREKQIQLWKELILDYC++QKIF+IG+EEDFPLF
Sbjct: 1   MQKLADFKLPQFFNYPPYFTLQPVRDTREKQIQLWKELILDYCKSQKIFLIGVEEDFPLF 60

Query: 61  SNSRGCDATGSLSHEARQAFISAL---------------------------------VKN 120
           SNS       SLSHEAR+ F+SA+                                 V++
Sbjct: 61  SNSA---IDRSLSHEARETFLSAIVGEGRAEWLDKGHRKCLILWHRIQDWADIVLQFVRD 120

Query: 121 NGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 150
           NGLEDSVMTVEEIRSG ES GTEL+GIDRTILMRALKLLE KGKLA+FKG+S DDEG+KF
Sbjct: 121 NGLEDSVMTVEEIRSGTESLGTELQGIDRTILMRALKLLENKGKLALFKGTSADDEGVKF 179

[Close]
BLAST of CsGy3G001160 vs. Swiss-Prot
Match: sp|Q8VZC9|VPS25_ARATH (Vacuolar protein sorting-associated protein 25 OS=Arabidopsis thaliana OX=3702 GN=VPS25 PE=1 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.0e-59
Identity = 122/182 (67.03%), Postives = 135/182 (74.18%), Query Frame = 0 

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60
           MQKL DFKLP FFNYPPYFTLQPVRDTREKQIQLWKELILDYC++QKIF+IG+EEDFPLF
Sbjct: 1   MQKLADFKLPQFFNYPPYFTLQPVRDTREKQIQLWKELILDYCKSQKIFLIGVEEDFPLF 60

Query: 61  SNSRGCDATGSLSHEARQAFISAL---------------------------------VKN 120
           SNS       SLSHEAR+ F+SA+                                 V++
Sbjct: 61  SNSA---IDRSLSHEARETFLSAIVGEGRAEWLDKGHRKCLILWHRIQDWADIVLQFVRD 120

Query: 121 NGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 150
           NGLEDSVMTVEEIRSG ES GTEL+GIDRTILMRALKLLE KGKLA+FKG+S DDEG+KF
Sbjct: 121 NGLEDSVMTVEEIRSGTESLGTELQGIDRTILMRALKLLENKGKLALFKGTSADDEGVKF 179

[Close]
BLAST of CsGy3G001160 vs. Swiss-Prot
Match: sp|Q6AX45|VPS25_XENLA (Vacuolar protein-sorting-associated protein 25 OS=Xenopus laevis OX=8355 GN=vps25 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.9e-18
Identity = 56/176 (31.82%), Postives = 87/176 (49.43%), Query Frame = 0 

Query: 7   FKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEE--DFPLFSNSR 66
           F+ P  +N+PP+FTLQP  DTR+KQ+  W  L+L YCR  K++ + L E  + PLF+N +
Sbjct: 3   FEWPWQYNFPPFFTLQPNVDTRQKQLSAWSSLVLSYCRQNKLYTMNLMEIQESPLFNNKK 62

Query: 67  GCDATGSLSHEARQAFISAL---------------------------------VKNNGLE 126
                  LS E+ Q  +  L                                 V  NG+ 
Sbjct: 63  ---IQRKLSLESVQVVLEELRKKGNLEWIDKNKSRFLIMWRRPDEWGKVIYQWVSKNGMT 122

Query: 127 DSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 148
           +SV T+ E+ SG ++ G E  G+D  +L+R+L+ L+Q+ K  I   +  +  G+KF
Sbjct: 123 NSVFTLYELISGDDTEGEEFHGLDEAMLLRSLEALQQEHKAEII--TLNESRGVKF 173

[Close]
BLAST of CsGy3G001160 vs. Swiss-Prot
Match: sp|Q55GD9|VPS25_DICDI (Vacuolar protein-sorting-associated protein 25 OS=Dictyostelium discoideum OX=44689 GN=vps25 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.5e-16
Identity = 55/191 (28.80%), Postives = 94/191 (49.21%), Query Frame = 0 

Query: 7   FKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFP----LFSN 66
           F+ P +++  P+FT+QP+ +TR+KQ Q+W++LIL YCR  KI+ + + E       LF+N
Sbjct: 6   FQFPPYYHKEPFFTIQPILNTRKKQFQMWQDLILQYCRYYKIYELDINESIKSNSVLFNN 65

Query: 67  SRGCDATGSLSHEARQAFISALVKNN---------------------------------- 126
            +       LS EA ++ I  +++N                                   
Sbjct: 66  EK---INRKLSREALKSIIDDIIENGFAEWVDKXXXXXXXXXXXXXXXXXXLIMWRKPDE 125

Query: 127 ------------GLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFK 148
                       GL ++V+TV EI++G +S+  E   ++ TILM++LK+LE++ K   F 
Sbjct: 126 WASLIYKWVADCGLLNTVLTVWEIQNGDDSKKQEFHQLNTTILMKSLKVLEKQSKCQTF- 185

[Close]
BLAST of CsGy3G001160 vs. Swiss-Prot
Match: sp|Q6NWF4|VPS25_DANRE (Vacuolar protein-sorting-associated protein 25 OS=Danio rerio OX=7955 GN=vps25 PE=2 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 6.0e-15
Identity = 53/176 (30.11%), Postives = 86/176 (48.86%), Query Frame = 0 

Query: 7   FKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEE--DFPLFSNSR 66
           F+ P  +N+PP+FTLQP  DTR+KQ+  W  L+L YCR +K++ + + E  + P+F+N +
Sbjct: 3   FEWPWQYNFPPFFTLQPNVDTRQKQLAAWCSLVLSYCRHRKLYTLDVLEAQESPVFNNKK 62

Query: 67  GCDATGSLSHEARQAFISAL---------------------------------VKNNGLE 126
                  LS EA Q     L                                 V  NG+ 
Sbjct: 63  ---IERKLSVEAIQVVFEELRKKGNLEWLDKNKSRCLIMWRRPEEWGKLIYQWVSKNGMV 122

Query: 127 DSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 148
           +SV T+ E+ +G ++   E  G++  +L+R+L+ L+  GK  I   +  D +G+KF
Sbjct: 123 NSVFTLYELANGDDTEKEEFHGLEDWMLLRSLQALQTDGKAEII--TMDDGKGVKF 173

[Close]
BLAST of CsGy3G001160 vs. Swiss-Prot
Match: sp|Q9CQ80|VPS25_MOUSE (Vacuolar protein-sorting-associated protein 25 OS=Mus musculus OX=10090 GN=Vps25 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12
Identity = 52/176 (29.55%), Postives = 80/176 (45.45%), Query Frame = 0 

Query: 7   FKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCR--TQKIFVIGLEEDFPLFSNSR 66
           F+ P  + +PP+FTLQP  DTR+KQ+  W  L+L +CR   Q    +   ++ PLF+N +
Sbjct: 5   FEWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVK 64

Query: 67  GCDATGSLSHEARQAFISALVKNNGLE--------------------------------- 126
                  L  E+ Q  +  L K   LE                                 
Sbjct: 65  ---LQRKLPVESIQIVLEELRKKGNLEWLDKNKSSFLIMWRRPEEWGKLIYQWVSRSGQN 124

Query: 127 DSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 148
           +SV T+ E+ SG ++   E  G+D   L+RAL+ L+Q+ K  I   + +D  G+KF
Sbjct: 125 NSVFTLYELTSGEDTEDEEFHGLDEATLLRALQALQQEHKAEII--TVSDGRGVKF 175

[Close]
BLAST of CsGy3G001160 vs. TrEMBL
Match: tr|A0A0A0L1R7|A0A0A0L1R7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006740 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 5.6e-66
Identity = 142/182 (78.02%), Postives = 142/182 (78.02%), Query Frame = 0 

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60

Query: 61  SNSRGCDATGSLSHEARQAFISAL---------------------------------VKN 120
           SNS       SLSHEARQAFISAL                                 VKN
Sbjct: 61  SNS---VIERSLSHEARQAFISALVSDGRAEWLDKGHRKCLILWHRIQDWADIILHFVKN 120

Query: 121 NGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 150
           NGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF
Sbjct: 121 NGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 179

[Close]
BLAST of CsGy3G001160 vs. TrEMBL
Match: tr|A0A1S3BKR8|A0A1S3BKR8_CUCME (vacuolar protein sorting-associated protein 25 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490745 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.1e-65
Identity = 140/182 (76.92%), Postives = 142/182 (78.02%), Query Frame = 0 

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60

Query: 61  SNSRGCDATGSLSHEARQAFISAL---------------------------------VKN 120
           SNS       SLSHEARQAF+SAL                                 VKN
Sbjct: 61  SNS---VIERSLSHEARQAFLSALVSDGRAEWLDKGHRKCLILWHRIQDWADIILHFVKN 120

Query: 121 NGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 150
           NGLEDSVMTVEEIRSGVESRGTEL+GIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF
Sbjct: 121 NGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 179

[Close]
BLAST of CsGy3G001160 vs. TrEMBL
Match: tr|A0A2I4H7U9|A0A2I4H7U9_9ROSI (vacuolar protein sorting-associated protein 25 OS=Juglans regia OX=51240 GN=LOC109014272 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 7.1e-61
Identity = 128/182 (70.33%), Postives = 138/182 (75.82%), Query Frame = 0 

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPVRDTR+KQ+QLWKELILDYCRTQKIFV+GLEEDFPLF
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTRDKQVQLWKELILDYCRTQKIFVVGLEEDFPLF 60

Query: 61  SNSRGCDATGSLSHEARQAFISAL---------------------------------VKN 120
           SN        SLSHEAR+AF+ AL                                 VK+
Sbjct: 61  SNP---VVERSLSHEAREAFLLALVSEGRAEWLDKGHRKCLILWHRIQEWADIILSFVKD 120

Query: 121 NGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 150
           NGLEDSVMTVEEIRSG ESRGTEL GIDRTILMRAL+LLEQKGKLAIFKG+STDDEG+KF
Sbjct: 121 NGLEDSVMTVEEIRSGAESRGTELHGIDRTILMRALRLLEQKGKLAIFKGTSTDDEGVKF 179

[Close]
BLAST of CsGy3G001160 vs. TrEMBL
Match: tr|A0A1R3JF65|A0A1R3JF65_9ROSI (ESCRT-II complex, vps25 subunit OS=Corchorus olitorius OX=93759 GN=COLO4_16920 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 7.1e-61
Identity = 128/182 (70.33%), Postives = 139/182 (76.37%), Query Frame = 0 

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPVR+TREKQ+QLWKELILDYCRTQKIFVIGLEE+FPLF
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVRETREKQVQLWKELILDYCRTQKIFVIGLEEEFPLF 60

Query: 61  SNSRGCDATGSLSHEARQAFISAL---------------------------------VKN 120
           SNS       +L+HEAR+AF+SAL                                 VK+
Sbjct: 61  SNS---VIERTLTHEAREAFLSALVSEGRAEWLDKGRRKCLILWHRIQDWADIILNFVKD 120

Query: 121 NGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 150
           NG EDSVMTVEEIRSG+ESRGTEL GIDRTILMRALKLLEQKGKLAIFKG+S DDEG+KF
Sbjct: 121 NGFEDSVMTVEEIRSGIESRGTELHGIDRTILMRALKLLEQKGKLAIFKGTSADDEGVKF 179

[Close]
BLAST of CsGy3G001160 vs. TrEMBL
Match: tr|A0A0D2QMU3|A0A0D2QMU3_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G186000 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 9.2e-61
Identity = 128/182 (70.33%), Postives = 139/182 (76.37%), Query Frame = 0 

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPVR+TREKQIQLWKELILDYCRTQKIF++ LEE+FPLF
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVRETREKQIQLWKELILDYCRTQKIFIVRLEEEFPLF 60

Query: 61  SNSRGCDATGSLSHEARQAFISAL---------------------------------VKN 120
           SNS       +LSHEAR+AF+SAL                                 VK+
Sbjct: 61  SNS---VIERTLSHEAREAFLSALVAEGRAEWLDKGRRNCLILWHRIQEWADIIVNFVKD 120

Query: 121 NGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKF 150
           NG EDSVMTVEEIRSG+ESRGTEL GIDRTILMRALKLLEQKGKLAIFKG+STDDEG+KF
Sbjct: 121 NGFEDSVMTVEEIRSGIESRGTELHGIDRTILMRALKLLEQKGKLAIFKGTSTDDEGVKF 179

The following BLAST results are available for this feature:
BLAST of CsGy3G001160 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146105.18.4e-6678.02PREDICTED: vacuolar protein sorting-associated protein 25 isoform X1 [Cucumis sa... [more]
XP_008448627.13.2e-6576.92PREDICTED: vacuolar protein sorting-associated protein 25 isoform X1 [Cucumis me... [more]
XP_022145259.12.3e-6373.63vacuolar protein sorting-associated protein 25 [Momordica charantia][more]
XP_022949655.16.7e-6374.73vacuolar protein sorting-associated protein 25 [Cucurbita moschata] >XP_02300557... [more]
XP_023540532.11.9e-6274.18vacuolar protein sorting-associated protein 25 [Cucurbita pepo subsp. pepo][more]
BLAST of CsGy3G001160 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G19003.25.8e-6167.03E2F/DP family winged-helix DNA-binding domain[more]
BLAST of CsGy3G001160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8VZC9|VPS25_ARATH1.0e-5967.03Vacuolar protein sorting-associated protein 25 OS=Arabidopsis thaliana OX=3702 G... [more]
sp|Q6AX45|VPS25_XENLA9.9e-1831.82Vacuolar protein-sorting-associated protein 25 OS=Xenopus laevis OX=8355 GN=vps2... [more]
sp|Q55GD9|VPS25_DICDI5.5e-1628.80Vacuolar protein-sorting-associated protein 25 OS=Dictyostelium discoideum OX=44... [more]
sp|Q6NWF4|VPS25_DANRE6.0e-1530.11Vacuolar protein-sorting-associated protein 25 OS=Danio rerio OX=7955 GN=vps25 P... [more]
sp|Q9CQ80|VPS25_MOUSE1.3e-1229.55Vacuolar protein-sorting-associated protein 25 OS=Mus musculus OX=10090 GN=Vps25... [more]
BLAST of CsGy3G001160 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L1R7|A0A0A0L1R7_CUCSA5.6e-6678.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006740 PE=4 SV=1[more]
tr|A0A1S3BKR8|A0A1S3BKR8_CUCME2.1e-6576.92vacuolar protein sorting-associated protein 25 isoform X1 OS=Cucumis melo OX=365... [more]
tr|A0A2I4H7U9|A0A2I4H7U9_9ROSI7.1e-6170.33vacuolar protein sorting-associated protein 25 OS=Juglans regia OX=51240 GN=LOC1... [more]
tr|A0A1R3JF65|A0A1R3JF65_9ROSI7.1e-6170.33ESCRT-II complex, vps25 subunit OS=Corchorus olitorius OX=93759 GN=COLO4_16920 P... [more]
tr|A0A0D2QMU3|A0A0D2QMU3_GOSRA9.2e-6170.33Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G186000 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0071985multivesicular body sorting pathway
Vocabulary: Cellular Component
TermDefinition
GO:0000814ESCRT II complex
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR008570ESCRT-II_cplx_Vps25-sub
IPR014041ESCRT-II_cplx_Vps25-sub_N
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071985 multivesicular body sorting pathway
cellular_component GO:0000814 ESCRT II complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G001160.1CsGy3G001160.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014041ESCRT-II complex, Vps25 subunit, N-terminal winged helixGENE3DG3DSA:1.10.10.570coord: 4..100
e-value: 7.2E-20
score: 73.3
IPR008570ESCRT-II complex, Vps25 subunitPFAMPF05871ESCRT-IIcoord: 13..86
e-value: 6.4E-16
score: 58.7
IPR008570ESCRT-II complex, Vps25 subunitPANTHERPTHR13149VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25coord: 5..87
coord: 78..147
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILYSSF46785"Winged helix" DNA-binding domaincoord: 81..147
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILYSSF46785"Winged helix" DNA-binding domaincoord: 7..91

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G001160Csa3G006740Cucumber (Chinese Long) v2cgybcuB109
CsGy3G001160MELO3C013816Melon (DHL92) v3.5.1cgybmeB209
CsGy3G001160CSPI03G01250Wild cucumber (PI 183967)cgybcpiB110
CsGy3G001160CmaCh06G006200Cucurbita maxima (Rimu)cgybcmaB429
CsGy3G001160CmoCh06G006280Cucurbita moschata (Rifu)cgybcmoB403
CsGy3G001160Cp4.1LG08g08850Cucurbita pepo (Zucchini)cgybcpeB456
CsGy3G001160MELO3C013816.2Melon (DHL92) v3.6.1cgybmedB202
CsGy3G001160CsaV3_3G001280Cucumber (Chinese Long) v3cgybcucB117
CsGy3G001160Bhi07G000828Wax gourdcgybwgoB326
CsGy3G001160Carg23409Silver-seed gourdcarcgybB0951
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G001160Cucurbita maxima (Rimu)cgybcmaB339
CsGy3G001160Cucurbita maxima (Rimu)cgybcmaB378
CsGy3G001160Cucurbita maxima (Rimu)cgybcmaB398
CsGy3G001160Cucurbita moschata (Rifu)cgybcmoB310
CsGy3G001160Cucurbita moschata (Rifu)cgybcmoB351
CsGy3G001160Cucurbita moschata (Rifu)cgybcmoB370
CsGy3G001160Cucurbita pepo (Zucchini)cgybcpeB325
CsGy3G001160Cucurbita pepo (Zucchini)cgybcpeB334
CsGy3G001160Cucurbita pepo (Zucchini)cgybcpeB426
CsGy3G001160Bottle gourd (USVL1VR-Ls)cgyblsiB134
CsGy3G001160Bottle gourd (USVL1VR-Ls)cgyblsiB217
CsGy3G001160Watermelon (Charleston Gray)cgybwcgB174
CsGy3G001160Watermelon (97103) v1cgybwmB188
CsGy3G001160Silver-seed gourdcarcgybB0775
CsGy3G001160Silver-seed gourdcarcgybB1033
CsGy3G001160Watermelon (97103) v2cgybwmbB174
CsGy3G001160Wax gourdcgybwgoB295