Carg23409 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAACAACAGGAAAAAAATTTAGGAAAGTTTATACTAGCTATGGAATGCAAGGCTCGTCTTAGTTTGCAAGTCTCTAGTCTCATTGAACCATTTACACCACTAAAATAGTTATGCATCAATGGAAAGTGGTTAGGCCTGTCATGTTTATGAATCTCTGCGTTAATTTATCTCTTTATGTTATTGATATTGTGCTAAGTTTCTTCCCTCCCATCTGAAATTTCTCAGTTATAGAGAGAAATGCATCCATAGGACTCATTTTCAGAGAGCGCAATAGAGAAAATGCAGAAATTGGGAGATTTCAAGCTACCGCATTTCTTCAATTACCCTCCATATTTCACGTAATTTCCTTTTCCTGTTTCAGTTACCATGGTTTTTTACATGTTTATTTGCTTAACCAAGTAACTTGGAAGTTGCGAGTCAATTTCTGAAGATGTTGATCTCTTGGTTTTGATTGCTTTTTCCTGAGTGAATAAAACCAACACTTCATTGCTCAGCCAGTAGTTATGCAACAATAACAGGGTTCTGGATCACTTATGCTTCTCCGTTTGCCTCATAAGAATGAATCTGATAATTTTTTTTTTCCATAAAAAATGAATTTGATAATTCTACCTTGCTGCAATTCTGAAATTGTTATTGATAACTTCGACTGTTTCACTTTATATCAAGCTTGTCATGTCTTAAGTTTCATTTATAATCTTGTATTGCATGTCTTATCAGTTTGCAACCGGTGAAGGACACCCGTGAGAAGCAAATCCAACTTTGGAAGGAACTTATTCTCGACTACTGCCGAACACAAAAGATATTTGTCATTGGACTCGAAGAGGAATTTCCTCTATTTTCAAATTCTGTCATTGAGAGTAAATTCCTGAACTTGTTTGGTCCTCATTGACCGTTAGGACTTTTGGTACATGCATTAACATCAACGCTAATAAAGTCATTCACAGTAGCATCATGAACAGTGTAAAAAACATTAAGATATTGGCTTCATTATATGCAACCTTTTCATTCTATGGAGCATAGTACATTGGGTTTGGTGTTTAGAACTCTCAGTCATGGATCTATGTTCTATTATTCCAGTTGTTTGATGTATTTTACAGTGTGGTTGTGATGCTACAGGATCTCTCAGTCATGAAGCTAGAGTAGCTTTTCTCTCTGCCTTAGTTTCAGATGGTTAGTCCGTGCTAGTTTTGTTCTATCATTATATTTGTTTACAGTTTCCATTTATTCCCAAAACTGATAATTGTTACTTTAATTGTCCAATATAGGTCGTGCAGAATGGCTGGATAAGGGACATAGGAAATGTCTTATTTTGTGGCACCGGATTCAAGATTGGGCTGACATCATTTTGCACTTTGTAAGACTAAATACTTTGTTAACTGTCAATAGTTATGTTAAACTTGATTGGTTTAGGGTGAGTTTGGAATGATTTTTGAAAGGGTAATAAAATTTTTAACTTTCTTTAATGTTGACTGATTAAAATTAGGTTAAACCTTTTCAGTTGTGTTGGTTTGTAAAATGTTGTGAAGCGTATCTTTTGAATTCTCAAGTTTGATGCCTCTACTGACCAACTCTTGAAAATCCTTTTTACCCATCTTTTCCCACATTTCCACACTTATTTACTTTATATTACAACTGATTTTTTTTTTAAAAAAAAGTTAAAACAATTATTTTAAAGAACTACAACATTCTCAAATTGAGCCTGTTTGGAAAGATTTTTCAAGTAATATGAACATTTTTGTAACACTTAAAATCCCTTGTTTAATCACTTGGAAAATCATTCCAAACAAACTCTAATCCAGGGGGTGCTTTGAAAGATTCTTATGCAATTGCCTTATTAAATAGGTGAAAAACAATGGACTTGAAGATAGTGTTATGACAGTTGAGGAAATACGTTCAGGAGTTGAATCTAGAGGAACAGGTACTTTCCTTGCTTCTACTGAGGCGATTTAGATCTTCCAATGATTTCTAAATCTATTTTTAATTTGCTACATTGATATTGGTTTTAAAGCAACTCTAGTTGGTTATCCATTATGTGTTATTTTGATGGAAAACATCTTGGTGCTTAATAAATCCAAGAAATTTGTCTCAAGGGGAAATGTAACTCTGGCAAAACTCTTATGAATAATTAGCCTTGAAGTCTCATTTTATTGGTAAACTTTTAAACCTATCAACTTAAGATAGCTTGAGATAGCGAGAATATACGTGAGCCATTAATATAGATAATTTCTCCTTACATTCATATTAAGACGAAGAGAAGAAAAAAGTATTGAAGATAGAAATTTAATAGAAGAAAATAAAAGAAAAACTCACTCAAATCACTTAAATCTTCTTTTTCTGGGCAAACAAATTACTTTCGTAGATGAGAGTCAAGAAATCATCGTTTGAGTAAGAAGGAAGGTAGGGGAATAGAGTCAAAGGTTCCAAGTTGTACTAGTTTTCGCTTTCATTTCCCCTCTTGTGTAAAGGAATATCTGGTTTTCTTTCATTCTGGAAGCCACCACGGCCAAGAAACTTTTCTTATATTTGTAAATGTCTACTTTGATTTCTTTGGTCCTGTAGATTATATTTAACAAATTTGATGCCAAATGAAGTGGACGAGACTTGAAACATGAACTTACTCATGCAAGTCATGTAAGAGTTTTGTTAAATGCTCTAAAATGTTTCATCATAGTAAAGACAAATAATCTTTTACACAAAATTCATGAATCAAATAGGAGTATGCTTTTGATACTTGCATTACTAAATGGTTACATCCTTTGATCACATTCAAGCCTTATTTGTGCAAACCAAATACGTTTATTTTTCAGAGCTTCAAGGGATTGACCGTACGATTTTAATGAGAGCATTGAAGCAACTTGAACAGAAGGGAAAGCTTGCAATTTTCAAGGGTTCTTCAACAGACGATGAAGGCATCAAATTCTCTGTATGACTCCAATATGGAACGGCCTGAATGTGAATTTTCCAGTTCAATCTTCTTCTAAATGATACTCATCTGTAGTTTCCCTGCCTATTCAAACTGGGATTGTAAGTTTTTTATTTTTATAGAGGTTTTACATTTAATACAATGTGGGATCTTATAATCCGTCCTCTTGAGCCATTTGTACAACTCAATACCAGCAACT CAACAACAGGAAAAAAATTTAGGAAAGTTTATACTAGCTATGGAATGCAAGGCTCGTCTTAGTTTGCAAGTCTCTAGTCTCATTGAACCATTTACACCACTAAAATAGTTATGCATCAATGGAAAGTGGTTAGGCCTGTCATGTTTATGAATCTCTGCGTTAATTTATCTCTTTATGTTATTGATATTGTGCTAAGTTTCTTCCCTCCCATCTGAAATTTCTCAGTTATAGAGAGAAATGCATCCATAGGACTCATTTTCAGAGAGCGCAATAGAGAAAATGCAGAAATTGGGAGATTTCAAGCTACCGCATTTCTTCAATTACCCTCCATATTTCACTTTGCAACCGGTGAAGGACACCCGTGAGAAGCAAATCCAACTTTGGAAGGAACTTATTCTCGACTACTGCCGAACACAAAAGATATTTGTCATTGGACTCGAAGAGGAATTTCCTCTATTTTCAAATTCTGTCATTGAGAATATTGGCTTCATTATATGCAACCTTTTCATTCTATGGAGCATAGTACATTGGTGTGGTTGTGATGCTACAGGATCTCTCAGTCATGAAGCTAGAGTAGCTTTTCTCTCTGCCTTAGTTTCAGATGGTCGTGCAGAATGGCTGGATAAGGGACATAGGAAATGTCTTATTTTGTGGCACCGGATTCAAGATTGGGCTGACATCATTTTGCACTTTGTGAAAAACAATGGACTTGAAGATAGTGTTATGACAGTTGAGGAAATACGTTCAGGAGTTGAATCTAGAGGAACAGAGCTTCAAGGGATTGACCGTACGATTTTAATGAGAGCATTGAAGCAACTTGAACAGAAGGGAAAGCTTGCAATTTTCAAGGGTTCTTCAACAGACGATGAAGGCATCAAATTCTCTGTATGACTCCAATATGGAACGGCCTGAATGTGAATTTTCCAGTTCAATCTTCTTCTAAATGATACTCATCTGTAGTTTCCCTGCCTATTCAAACTGGGATTGTAAGTTTTTTATTTTTATAGAGGTTTTACATTTAATACAATGTGGGATCTTATAATCCGTCCTCTTGAGCCATTTGTACAACTCAATACCAGCAACT ATGCAGAAATTGGGAGATTTCAAGCTACCGCATTTCTTCAATTACCCTCCATATTTCACTTTGCAACCGGTGAAGGACACCCGTGAGAAGCAAATCCAACTTTGGAAGGAACTTATTCTCGACTACTGCCGAACACAAAAGATATTTGTCATTGGACTCGAAGAGGAATTTCCTCTATTTTCAAATTCTGTCATTGAGAATATTGGCTTCATTATATGCAACCTTTTCATTCTATGGAGCATAGTACATTGGTGTGGTTGTGATGCTACAGGATCTCTCAGTCATGAAGCTAGAGTAGCTTTTCTCTCTGCCTTAGTTTCAGATGGTCGTGCAGAATGGCTGGATAAGGGACATAGGAAATGTCTTATTTTGTGGCACCGGATTCAAGATTGGGCTGACATCATTTTGCACTTTGTGAAAAACAATGGACTTGAAGATAGTGTTATGACAGTTGAGGAAATACGTTCAGGAGTTGAATCTAGAGGAACAGAGCTTCAAGGGATTGACCGTACGATTTTAATGAGAGCATTGAAGCAACTTGAACAGAAGGGAAAGCTTGCAATTTTCAAGGGTTCTTCAACAGACGATGAAGGCATCAAATTCTCTGTATGA MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLFSNSVIENIGFIICNLFILWSIVHWCGCDATGSLSHEARVAFLSALVSDGRAEWLDKGHRKCLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQLEQKGKLAIFKGSSTDDEGIKFSV
BLAST of Carg23409 vs. NCBI nr
Match: XP_022949655.1 (vacuolar protein sorting-associated protein 25 [Cucurbita moschata] >XP_023005573.1 vacuolar protein sorting-associated protein 25 [Cucurbita maxima]) HSP 1 Score: 351.3 bits (900), Expect = 2.2e-93 Identity = 178/203 (87.68%), Postives = 178/203 (87.68%), Query Frame = 0
BLAST of Carg23409 vs. NCBI nr
Match: XP_023540532.1 (vacuolar protein sorting-associated protein 25 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 349.7 bits (896), Expect = 6.5e-93 Identity = 177/203 (87.19%), Postives = 177/203 (87.19%), Query Frame = 0
BLAST of Carg23409 vs. NCBI nr
Match: XP_008448627.1 (PREDICTED: vacuolar protein sorting-associated protein 25 isoform X1 [Cucumis melo]) HSP 1 Score: 344.0 bits (881), Expect = 3.5e-91 Identity = 174/203 (85.71%), Postives = 176/203 (86.70%), Query Frame = 0
BLAST of Carg23409 vs. NCBI nr
Match: XP_004146105.1 (PREDICTED: vacuolar protein sorting-associated protein 25 isoform X1 [Cucumis sativus] >KGN55713.1 hypothetical protein Csa_3G006740 [Cucumis sativus]) HSP 1 Score: 342.0 bits (876), Expect = 1.3e-90 Identity = 172/203 (84.73%), Postives = 176/203 (86.70%), Query Frame = 0
BLAST of Carg23409 vs. NCBI nr
Match: XP_022145259.1 (vacuolar protein sorting-associated protein 25 [Momordica charantia]) HSP 1 Score: 339.3 bits (869), Expect = 8.7e-90 Identity = 170/203 (83.74%), Postives = 175/203 (86.21%), Query Frame = 0
BLAST of Carg23409 vs. TAIR10
Match: AT4G19003.2 (E2F/DP family winged-helix DNA-binding domain) HSP 1 Score: 308.5 bits (789), Expect = 3.0e-84 Identity = 151/203 (74.38%), Postives = 166/203 (81.77%), Query Frame = 0
BLAST of Carg23409 vs. Swiss-Prot
Match: sp|Q8VZC9|VPS25_ARATH (Vacuolar protein sorting-associated protein 25 OS=Arabidopsis thaliana OX=3702 GN=VPS25 PE=1 SV=1) HSP 1 Score: 308.5 bits (789), Expect = 5.4e-83 Identity = 151/203 (74.38%), Postives = 166/203 (81.77%), Query Frame = 0
BLAST of Carg23409 vs. Swiss-Prot
Match: sp|Q6AX45|VPS25_XENLA (Vacuolar protein-sorting-associated protein 25 OS=Xenopus laevis OX=8355 GN=vps25 PE=2 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29 Identity = 69/197 (35.03%), Postives = 104/197 (52.79%), Query Frame = 0
BLAST of Carg23409 vs. Swiss-Prot
Match: sp|Q6NWF4|VPS25_DANRE (Vacuolar protein-sorting-associated protein 25 OS=Danio rerio OX=7955 GN=vps25 PE=2 SV=2) HSP 1 Score: 127.9 bits (320), Expect = 1.3e-28 Identity = 68/197 (34.52%), Postives = 105/197 (53.30%), Query Frame = 0
BLAST of Carg23409 vs. Swiss-Prot
Match: sp|Q55GD9|VPS25_DICDI (Vacuolar protein-sorting-associated protein 25 OS=Dictyostelium discoideum OX=44689 GN=vps25 PE=1 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 1.0e-25 Identity = 69/208 (33.17%), Postives = 114/208 (54.81%), Query Frame = 0
BLAST of Carg23409 vs. Swiss-Prot
Match: sp|Q9CQ80|VPS25_MOUSE (Vacuolar protein-sorting-associated protein 25 OS=Mus musculus OX=10090 GN=Vps25 PE=1 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 3.3e-24 Identity = 64/197 (32.49%), Postives = 97/197 (49.24%), Query Frame = 0
BLAST of Carg23409 vs. TrEMBL
Match: tr|A0A1S3BKR8|A0A1S3BKR8_CUCME (vacuolar protein sorting-associated protein 25 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490745 PE=4 SV=1) HSP 1 Score: 344.0 bits (881), Expect = 2.3e-91 Identity = 174/203 (85.71%), Postives = 176/203 (86.70%), Query Frame = 0
BLAST of Carg23409 vs. TrEMBL
Match: tr|A0A0A0L1R7|A0A0A0L1R7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006740 PE=4 SV=1) HSP 1 Score: 342.0 bits (876), Expect = 8.9e-91 Identity = 172/203 (84.73%), Postives = 176/203 (86.70%), Query Frame = 0
BLAST of Carg23409 vs. TrEMBL
Match: tr|A0A1R3JF65|A0A1R3JF65_9ROSI (ESCRT-II complex, vps25 subunit OS=Corchorus olitorius OX=93759 GN=COLO4_16920 PE=4 SV=1) HSP 1 Score: 324.3 bits (830), Expect = 1.9e-85 Identity = 161/203 (79.31%), Postives = 172/203 (84.73%), Query Frame = 0
BLAST of Carg23409 vs. TrEMBL
Match: tr|A0A2I4H7U9|A0A2I4H7U9_9ROSI (vacuolar protein sorting-associated protein 25 OS=Juglans regia OX=51240 GN=LOC109014272 PE=4 SV=1) HSP 1 Score: 321.6 bits (823), Expect = 1.2e-84 Identity = 158/203 (77.83%), Postives = 171/203 (84.24%), Query Frame = 0
BLAST of Carg23409 vs. TrEMBL
Match: tr|A0A2P4LUZ0|A0A2P4LUZ0_QUESU (Vacuolar protein sorting-associated protein 25 OS=Quercus suber OX=58331 GN=CFP56_33026 PE=4 SV=1) HSP 1 Score: 320.9 bits (821), Expect = 2.1e-84 Identity = 158/203 (77.83%), Postives = 170/203 (83.74%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |