Carg23409 (gene) Silver-seed gourd

NameCarg23409
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionVacuolar protein sorting-associated protein 25
LocationCucurbita_argyrosperma_scaffold_184 : 257618 .. 260739 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACAACAGGAAAAAAATTTAGGAAAGTTTATACTAGCTATGGAATGCAAGGCTCGTCTTAGTTTGCAAGTCTCTAGTCTCATTGAACCATTTACACCACTAAAATAGTTATGCATCAATGGAAAGTGGTTAGGCCTGTCATGTTTATGAATCTCTGCGTTAATTTATCTCTTTATGTTATTGATATTGTGCTAAGTTTCTTCCCTCCCATCTGAAATTTCTCAGTTATAGAGAGAAATGCATCCATAGGACTCATTTTCAGAGAGCGCAATAGAGAAAATGCAGAAATTGGGAGATTTCAAGCTACCGCATTTCTTCAATTACCCTCCATATTTCACGTAATTTCCTTTTCCTGTTTCAGTTACCATGGTTTTTTACATGTTTATTTGCTTAACCAAGTAACTTGGAAGTTGCGAGTCAATTTCTGAAGATGTTGATCTCTTGGTTTTGATTGCTTTTTCCTGAGTGAATAAAACCAACACTTCATTGCTCAGCCAGTAGTTATGCAACAATAACAGGGTTCTGGATCACTTATGCTTCTCCGTTTGCCTCATAAGAATGAATCTGATAATTTTTTTTTTCCATAAAAAATGAATTTGATAATTCTACCTTGCTGCAATTCTGAAATTGTTATTGATAACTTCGACTGTTTCACTTTATATCAAGCTTGTCATGTCTTAAGTTTCATTTATAATCTTGTATTGCATGTCTTATCAGTTTGCAACCGGTGAAGGACACCCGTGAGAAGCAAATCCAACTTTGGAAGGAACTTATTCTCGACTACTGCCGAACACAAAAGATATTTGTCATTGGACTCGAAGAGGAATTTCCTCTATTTTCAAATTCTGTCATTGAGAGTAAATTCCTGAACTTGTTTGGTCCTCATTGACCGTTAGGACTTTTGGTACATGCATTAACATCAACGCTAATAAAGTCATTCACAGTAGCATCATGAACAGTGTAAAAAACATTAAGATATTGGCTTCATTATATGCAACCTTTTCATTCTATGGAGCATAGTACATTGGGTTTGGTGTTTAGAACTCTCAGTCATGGATCTATGTTCTATTATTCCAGTTGTTTGATGTATTTTACAGTGTGGTTGTGATGCTACAGGATCTCTCAGTCATGAAGCTAGAGTAGCTTTTCTCTCTGCCTTAGTTTCAGATGGTTAGTCCGTGCTAGTTTTGTTCTATCATTATATTTGTTTACAGTTTCCATTTATTCCCAAAACTGATAATTGTTACTTTAATTGTCCAATATAGGTCGTGCAGAATGGCTGGATAAGGGACATAGGAAATGTCTTATTTTGTGGCACCGGATTCAAGATTGGGCTGACATCATTTTGCACTTTGTAAGACTAAATACTTTGTTAACTGTCAATAGTTATGTTAAACTTGATTGGTTTAGGGTGAGTTTGGAATGATTTTTGAAAGGGTAATAAAATTTTTAACTTTCTTTAATGTTGACTGATTAAAATTAGGTTAAACCTTTTCAGTTGTGTTGGTTTGTAAAATGTTGTGAAGCGTATCTTTTGAATTCTCAAGTTTGATGCCTCTACTGACCAACTCTTGAAAATCCTTTTTACCCATCTTTTCCCACATTTCCACACTTATTTACTTTATATTACAACTGATTTTTTTTTTAAAAAAAAGTTAAAACAATTATTTTAAAGAACTACAACATTCTCAAATTGAGCCTGTTTGGAAAGATTTTTCAAGTAATATGAACATTTTTGTAACACTTAAAATCCCTTGTTTAATCACTTGGAAAATCATTCCAAACAAACTCTAATCCAGGGGGTGCTTTGAAAGATTCTTATGCAATTGCCTTATTAAATAGGTGAAAAACAATGGACTTGAAGATAGTGTTATGACAGTTGAGGAAATACGTTCAGGAGTTGAATCTAGAGGAACAGGTACTTTCCTTGCTTCTACTGAGGCGATTTAGATCTTCCAATGATTTCTAAATCTATTTTTAATTTGCTACATTGATATTGGTTTTAAAGCAACTCTAGTTGGTTATCCATTATGTGTTATTTTGATGGAAAACATCTTGGTGCTTAATAAATCCAAGAAATTTGTCTCAAGGGGAAATGTAACTCTGGCAAAACTCTTATGAATAATTAGCCTTGAAGTCTCATTTTATTGGTAAACTTTTAAACCTATCAACTTAAGATAGCTTGAGATAGCGAGAATATACGTGAGCCATTAATATAGATAATTTCTCCTTACATTCATATTAAGACGAAGAGAAGAAAAAAGTATTGAAGATAGAAATTTAATAGAAGAAAATAAAAGAAAAACTCACTCAAATCACTTAAATCTTCTTTTTCTGGGCAAACAAATTACTTTCGTAGATGAGAGTCAAGAAATCATCGTTTGAGTAAGAAGGAAGGTAGGGGAATAGAGTCAAAGGTTCCAAGTTGTACTAGTTTTCGCTTTCATTTCCCCTCTTGTGTAAAGGAATATCTGGTTTTCTTTCATTCTGGAAGCCACCACGGCCAAGAAACTTTTCTTATATTTGTAAATGTCTACTTTGATTTCTTTGGTCCTGTAGATTATATTTAACAAATTTGATGCCAAATGAAGTGGACGAGACTTGAAACATGAACTTACTCATGCAAGTCATGTAAGAGTTTTGTTAAATGCTCTAAAATGTTTCATCATAGTAAAGACAAATAATCTTTTACACAAAATTCATGAATCAAATAGGAGTATGCTTTTGATACTTGCATTACTAAATGGTTACATCCTTTGATCACATTCAAGCCTTATTTGTGCAAACCAAATACGTTTATTTTTCAGAGCTTCAAGGGATTGACCGTACGATTTTAATGAGAGCATTGAAGCAACTTGAACAGAAGGGAAAGCTTGCAATTTTCAAGGGTTCTTCAACAGACGATGAAGGCATCAAATTCTCTGTATGACTCCAATATGGAACGGCCTGAATGTGAATTTTCCAGTTCAATCTTCTTCTAAATGATACTCATCTGTAGTTTCCCTGCCTATTCAAACTGGGATTGTAAGTTTTTTATTTTTATAGAGGTTTTACATTTAATACAATGTGGGATCTTATAATCCGTCCTCTTGAGCCATTTGTACAACTCAATACCAGCAACT

mRNA sequence

CAACAACAGGAAAAAAATTTAGGAAAGTTTATACTAGCTATGGAATGCAAGGCTCGTCTTAGTTTGCAAGTCTCTAGTCTCATTGAACCATTTACACCACTAAAATAGTTATGCATCAATGGAAAGTGGTTAGGCCTGTCATGTTTATGAATCTCTGCGTTAATTTATCTCTTTATGTTATTGATATTGTGCTAAGTTTCTTCCCTCCCATCTGAAATTTCTCAGTTATAGAGAGAAATGCATCCATAGGACTCATTTTCAGAGAGCGCAATAGAGAAAATGCAGAAATTGGGAGATTTCAAGCTACCGCATTTCTTCAATTACCCTCCATATTTCACTTTGCAACCGGTGAAGGACACCCGTGAGAAGCAAATCCAACTTTGGAAGGAACTTATTCTCGACTACTGCCGAACACAAAAGATATTTGTCATTGGACTCGAAGAGGAATTTCCTCTATTTTCAAATTCTGTCATTGAGAATATTGGCTTCATTATATGCAACCTTTTCATTCTATGGAGCATAGTACATTGGTGTGGTTGTGATGCTACAGGATCTCTCAGTCATGAAGCTAGAGTAGCTTTTCTCTCTGCCTTAGTTTCAGATGGTCGTGCAGAATGGCTGGATAAGGGACATAGGAAATGTCTTATTTTGTGGCACCGGATTCAAGATTGGGCTGACATCATTTTGCACTTTGTGAAAAACAATGGACTTGAAGATAGTGTTATGACAGTTGAGGAAATACGTTCAGGAGTTGAATCTAGAGGAACAGAGCTTCAAGGGATTGACCGTACGATTTTAATGAGAGCATTGAAGCAACTTGAACAGAAGGGAAAGCTTGCAATTTTCAAGGGTTCTTCAACAGACGATGAAGGCATCAAATTCTCTGTATGACTCCAATATGGAACGGCCTGAATGTGAATTTTCCAGTTCAATCTTCTTCTAAATGATACTCATCTGTAGTTTCCCTGCCTATTCAAACTGGGATTGTAAGTTTTTTATTTTTATAGAGGTTTTACATTTAATACAATGTGGGATCTTATAATCCGTCCTCTTGAGCCATTTGTACAACTCAATACCAGCAACT

Coding sequence (CDS)

ATGCAGAAATTGGGAGATTTCAAGCTACCGCATTTCTTCAATTACCCTCCATATTTCACTTTGCAACCGGTGAAGGACACCCGTGAGAAGCAAATCCAACTTTGGAAGGAACTTATTCTCGACTACTGCCGAACACAAAAGATATTTGTCATTGGACTCGAAGAGGAATTTCCTCTATTTTCAAATTCTGTCATTGAGAATATTGGCTTCATTATATGCAACCTTTTCATTCTATGGAGCATAGTACATTGGTGTGGTTGTGATGCTACAGGATCTCTCAGTCATGAAGCTAGAGTAGCTTTTCTCTCTGCCTTAGTTTCAGATGGTCGTGCAGAATGGCTGGATAAGGGACATAGGAAATGTCTTATTTTGTGGCACCGGATTCAAGATTGGGCTGACATCATTTTGCACTTTGTGAAAAACAATGGACTTGAAGATAGTGTTATGACAGTTGAGGAAATACGTTCAGGAGTTGAATCTAGAGGAACAGAGCTTCAAGGGATTGACCGTACGATTTTAATGAGAGCATTGAAGCAACTTGAACAGAAGGGAAAGCTTGCAATTTTCAAGGGTTCTTCAACAGACGATGAAGGCATCAAATTCTCTGTATGA

Protein sequence

MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLFSNSVIENIGFIICNLFILWSIVHWCGCDATGSLSHEARVAFLSALVSDGRAEWLDKGHRKCLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQLEQKGKLAIFKGSSTDDEGIKFSV
BLAST of Carg23409 vs. NCBI nr
Match: XP_022949655.1 (vacuolar protein sorting-associated protein 25 [Cucurbita moschata] >XP_023005573.1 vacuolar protein sorting-associated protein 25 [Cucurbita maxima])

HSP 1 Score: 351.3 bits (900), Expect = 2.2e-93
Identity = 178/203 (87.68%), Postives = 178/203 (87.68%), Query Frame = 0

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLF
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLF 60

Query: 61  SNSVIENIGFIICNLFILWSIVHWCGCDATGSLSHEARVAFLSALVSDGRAEWLDKGHRK 120
           SNSVIE                         SLSHEARVAFLSALVSDGRAEWLDKGHRK
Sbjct: 61  SNSVIER------------------------SLSHEARVAFLSALVSDGRAEWLDKGHRK 120

Query: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQL 180
           CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQL
Sbjct: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQL 179

Query: 181 EQKGKLAIFKGSSTDDEGIKFSV 204
           EQKGKLAIFKGSSTDDEGIKFSV
Sbjct: 181 EQKGKLAIFKGSSTDDEGIKFSV 179

BLAST of Carg23409 vs. NCBI nr
Match: XP_023540532.1 (vacuolar protein sorting-associated protein 25 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 349.7 bits (896), Expect = 6.5e-93
Identity = 177/203 (87.19%), Postives = 177/203 (87.19%), Query Frame = 0

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLF
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLF 60

Query: 61  SNSVIENIGFIICNLFILWSIVHWCGCDATGSLSHEARVAFLSALVSDGRAEWLDKGHRK 120
           SNSVIE                         SLSHEARV FLSALVSDGRAEWLDKGHRK
Sbjct: 61  SNSVIER------------------------SLSHEARVVFLSALVSDGRAEWLDKGHRK 120

Query: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQL 180
           CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQL
Sbjct: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQL 179

Query: 181 EQKGKLAIFKGSSTDDEGIKFSV 204
           EQKGKLAIFKGSSTDDEGIKFSV
Sbjct: 181 EQKGKLAIFKGSSTDDEGIKFSV 179

BLAST of Carg23409 vs. NCBI nr
Match: XP_008448627.1 (PREDICTED: vacuolar protein sorting-associated protein 25 isoform X1 [Cucumis melo])

HSP 1 Score: 344.0 bits (881), Expect = 3.5e-91
Identity = 174/203 (85.71%), Postives = 176/203 (86.70%), Query Frame = 0

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPV+DTREKQIQLWKELILDYCRTQKIFVIGLEE+FPLF
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60

Query: 61  SNSVIENIGFIICNLFILWSIVHWCGCDATGSLSHEARVAFLSALVSDGRAEWLDKGHRK 120
           SNSVIE                         SLSHEAR AFLSALVSDGRAEWLDKGHRK
Sbjct: 61  SNSVIER------------------------SLSHEARQAFLSALVSDGRAEWLDKGHRK 120

Query: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQL 180
           CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALK L
Sbjct: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKLL 179

Query: 181 EQKGKLAIFKGSSTDDEGIKFSV 204
           EQKGKLAIFKGSSTDDEGIKFSV
Sbjct: 181 EQKGKLAIFKGSSTDDEGIKFSV 179

BLAST of Carg23409 vs. NCBI nr
Match: XP_004146105.1 (PREDICTED: vacuolar protein sorting-associated protein 25 isoform X1 [Cucumis sativus] >KGN55713.1 hypothetical protein Csa_3G006740 [Cucumis sativus])

HSP 1 Score: 342.0 bits (876), Expect = 1.3e-90
Identity = 172/203 (84.73%), Postives = 176/203 (86.70%), Query Frame = 0

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPV+DTREKQIQLWKELILDYCRTQKIFVIGLEE+FPLF
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60

Query: 61  SNSVIENIGFIICNLFILWSIVHWCGCDATGSLSHEARVAFLSALVSDGRAEWLDKGHRK 120
           SNSVIE                         SLSHEAR AF+SALVSDGRAEWLDKGHRK
Sbjct: 61  SNSVIER------------------------SLSHEARQAFISALVSDGRAEWLDKGHRK 120

Query: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQL 180
           CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTEL+GIDRTILMRALK L
Sbjct: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLL 179

Query: 181 EQKGKLAIFKGSSTDDEGIKFSV 204
           EQKGKLAIFKGSSTDDEGIKFSV
Sbjct: 181 EQKGKLAIFKGSSTDDEGIKFSV 179

BLAST of Carg23409 vs. NCBI nr
Match: XP_022145259.1 (vacuolar protein sorting-associated protein 25 [Momordica charantia])

HSP 1 Score: 339.3 bits (869), Expect = 8.7e-90
Identity = 170/203 (83.74%), Postives = 175/203 (86.21%), Query Frame = 0

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPV+DTREKQIQLWKELILDYCRTQKIFVIGLEEEFP+F
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPIF 60

Query: 61  SNSVIENIGFIICNLFILWSIVHWCGCDATGSLSHEARVAFLSALVSDGRAEWLDKGHRK 120
           +N+ IE                         SLSHEAR AFLSALVSDGRAEWLDKGHRK
Sbjct: 61  TNTAIER------------------------SLSHEAREAFLSALVSDGRAEWLDKGHRK 120

Query: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQL 180
           CLILWHRIQDWADIILHFVKNNGLEDSVMTVEE+RSGVESRGTELQGIDRTILMRALK L
Sbjct: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEMRSGVESRGTELQGIDRTILMRALKLL 179

Query: 181 EQKGKLAIFKGSSTDDEGIKFSV 204
           EQKGKLAIFKGSSTDDEGIKFSV
Sbjct: 181 EQKGKLAIFKGSSTDDEGIKFSV 179

BLAST of Carg23409 vs. TAIR10
Match: AT4G19003.2 (E2F/DP family winged-helix DNA-binding domain)

HSP 1 Score: 308.5 bits (789), Expect = 3.0e-84
Identity = 151/203 (74.38%), Postives = 166/203 (81.77%), Query Frame = 0

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLF 60
           MQKL DFKLP FFNYPPYFTLQPV+DTREKQIQLWKELILDYC++QKIF+IG+EE+FPLF
Sbjct: 1   MQKLADFKLPQFFNYPPYFTLQPVRDTREKQIQLWKELILDYCKSQKIFLIGVEEDFPLF 60

Query: 61  SNSVIENIGFIICNLFILWSIVHWCGCDATGSLSHEARVAFLSALVSDGRAEWLDKGHRK 120
           SNS I+                         SLSHEAR  FLSA+V +GRAEWLDKGHRK
Sbjct: 61  SNSAIDR------------------------SLSHEARETFLSAIVGEGRAEWLDKGHRK 120

Query: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQL 180
           CLILWHRIQDWADI+L FV++NGLEDSVMTVEEIRSG ES GTELQGIDRTILMRALK L
Sbjct: 121 CLILWHRIQDWADIVLQFVRDNGLEDSVMTVEEIRSGTESLGTELQGIDRTILMRALKLL 179

Query: 181 EQKGKLAIFKGSSTDDEGIKFSV 204
           E KGKLA+FKG+S DDEG+KFSV
Sbjct: 181 ENKGKLALFKGTSADDEGVKFSV 179

BLAST of Carg23409 vs. Swiss-Prot
Match: sp|Q8VZC9|VPS25_ARATH (Vacuolar protein sorting-associated protein 25 OS=Arabidopsis thaliana OX=3702 GN=VPS25 PE=1 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 5.4e-83
Identity = 151/203 (74.38%), Postives = 166/203 (81.77%), Query Frame = 0

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLF 60
           MQKL DFKLP FFNYPPYFTLQPV+DTREKQIQLWKELILDYC++QKIF+IG+EE+FPLF
Sbjct: 1   MQKLADFKLPQFFNYPPYFTLQPVRDTREKQIQLWKELILDYCKSQKIFLIGVEEDFPLF 60

Query: 61  SNSVIENIGFIICNLFILWSIVHWCGCDATGSLSHEARVAFLSALVSDGRAEWLDKGHRK 120
           SNS I+                         SLSHEAR  FLSA+V +GRAEWLDKGHRK
Sbjct: 61  SNSAIDR------------------------SLSHEARETFLSAIVGEGRAEWLDKGHRK 120

Query: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQL 180
           CLILWHRIQDWADI+L FV++NGLEDSVMTVEEIRSG ES GTELQGIDRTILMRALK L
Sbjct: 121 CLILWHRIQDWADIVLQFVRDNGLEDSVMTVEEIRSGTESLGTELQGIDRTILMRALKLL 179

Query: 181 EQKGKLAIFKGSSTDDEGIKFSV 204
           E KGKLA+FKG+S DDEG+KFSV
Sbjct: 181 ENKGKLALFKGTSADDEGVKFSV 179

BLAST of Carg23409 vs. Swiss-Prot
Match: sp|Q6AX45|VPS25_XENLA (Vacuolar protein-sorting-associated protein 25 OS=Xenopus laevis OX=8355 GN=vps25 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29
Identity = 69/197 (35.03%), Postives = 104/197 (52.79%), Query Frame = 0

Query: 7   FKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEE--EFPLFSNSV 66
           F+ P  +N+PP+FTLQP  DTR+KQ+  W  L+L YCR  K++ + L E  E PLF+N  
Sbjct: 3   FEWPWQYNFPPFFTLQPNVDTRQKQLSAWSSLVLSYCRQNKLYTMNLMEIQESPLFNNKK 62

Query: 67  IENIGFIICNLFILWSIVHWCGCDATGSLSHEARVAFLSALVSDGRAEWLDKGHRKCLIL 126
           I+                          LS E+    L  L   G  EW+DK   + LI+
Sbjct: 63  IQR------------------------KLSLESVQVVLEELRKKGNLEWIDKNKSRFLIM 122

Query: 127 WHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQLEQKG 186
           W R  +W  +I  +V  NG+ +SV T+ E+ SG ++ G E  G+D  +L+R+L+ L+Q+ 
Sbjct: 123 WRRPDEWGKVIYQWVSKNGMTNSVFTLYELISGDDTEGEEFHGLDEAMLLRSLEALQQEH 173

Query: 187 KLAIFKGSSTDDEGIKF 202
           K  I   +  +  G+KF
Sbjct: 183 KAEII--TLNESRGVKF 173

BLAST of Carg23409 vs. Swiss-Prot
Match: sp|Q6NWF4|VPS25_DANRE (Vacuolar protein-sorting-associated protein 25 OS=Danio rerio OX=7955 GN=vps25 PE=2 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-28
Identity = 68/197 (34.52%), Postives = 105/197 (53.30%), Query Frame = 0

Query: 7   FKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEE--EFPLFSNSV 66
           F+ P  +N+PP+FTLQP  DTR+KQ+  W  L+L YCR +K++ + + E  E P+F+N  
Sbjct: 3   FEWPWQYNFPPFFTLQPNVDTRQKQLAAWCSLVLSYCRHRKLYTLDVLEAQESPVFNNKK 62

Query: 67  IENIGFIICNLFILWSIVHWCGCDATGSLSHEARVAFLSALVSDGRAEWLDKGHRKCLIL 126
           IE                          LS EA       L   G  EWLDK   +CLI+
Sbjct: 63  IER------------------------KLSVEAIQVVFEELRKKGNLEWLDKNKSRCLIM 122

Query: 127 WHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQLEQKG 186
           W R ++W  +I  +V  NG+ +SV T+ E+ +G ++   E  G++  +L+R+L+ L+  G
Sbjct: 123 WRRPEEWGKLIYQWVSKNGMVNSVFTLYELANGDDTEKEEFHGLEDWMLLRSLQALQTDG 173

Query: 187 KLAIFKGSSTDDEGIKF 202
           K  I   +  D +G+KF
Sbjct: 183 KAEII--TMDDGKGVKF 173

BLAST of Carg23409 vs. Swiss-Prot
Match: sp|Q55GD9|VPS25_DICDI (Vacuolar protein-sorting-associated protein 25 OS=Dictyostelium discoideum OX=44689 GN=vps25 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.0e-25
Identity = 69/208 (33.17%), Postives = 114/208 (54.81%), Query Frame = 0

Query: 7   FKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLFSNSVIE 66
           F+ P +++  P+FT+QP+ +TR+KQ Q+W++LIL YCR  KI+ + + E   + SNSV+ 
Sbjct: 6   FQFPPYYHKEPFFTIQPILNTRKKQFQMWQDLILQYCRYYKIYELDINES--IKSNSVLF 65

Query: 67  NIGFIICNLFILWSIVHWCGCDATGSLSHEARVAFLSALVSDGRAEWLDK---------- 126
           N   I                     LS EA  + +  ++ +G AEW+DK          
Sbjct: 66  NNEKI------------------NRKLSREALKSIIDDIIENGFAEWVDKXXXXXXXXXX 125

Query: 127 ---GHRKCLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTIL 186
                   LI+W +  +WA +I  +V + GL ++V+TV EI++G +S+  E   ++ TIL
Sbjct: 126 XXXXXXXXLIMWRKPDEWASLIYKWVADCGLLNTVLTVWEIQNGDDSKKQEFHQLNTTIL 185

Query: 187 MRALKQLEQKGKLAIFKGSSTDDEGIKF 202
           M++LK LE++ K   F  S  ++ G+KF
Sbjct: 186 MKSLKVLEKQSKCQTF--SQDENVGVKF 191

BLAST of Carg23409 vs. Swiss-Prot
Match: sp|Q9CQ80|VPS25_MOUSE (Vacuolar protein-sorting-associated protein 25 OS=Mus musculus OX=10090 GN=Vps25 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.3e-24
Identity = 64/197 (32.49%), Postives = 97/197 (49.24%), Query Frame = 0

Query: 7   FKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCR--TQKIFVIGLEEEFPLFSNSV 66
           F+ P  + +PP+FTLQP  DTR+KQ+  W  L+L +CR   Q    +   +E PLF+N  
Sbjct: 5   FEWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVK 64

Query: 67  IENIGFIICNLFILWSIVHWCGCDATGSLSHEARVAFLSALVSDGRAEWLDKGHRKCLIL 126
           ++                          L  E+    L  L   G  EWLDK     LI+
Sbjct: 65  LQR------------------------KLPVESIQIVLEELRKKGNLEWLDKNKSSFLIM 124

Query: 127 WHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQLEQKG 186
           W R ++W  +I  +V  +G  +SV T+ E+ SG ++   E  G+D   L+RAL+ L+Q+ 
Sbjct: 125 WRRPEEWGKLIYQWVSRSGQNNSVFTLYELTSGEDTEDEEFHGLDEATLLRALQALQQEH 175

Query: 187 KLAIFKGSSTDDEGIKF 202
           K  I   + +D  G+KF
Sbjct: 185 KAEII--TVSDGRGVKF 175

BLAST of Carg23409 vs. TrEMBL
Match: tr|A0A1S3BKR8|A0A1S3BKR8_CUCME (vacuolar protein sorting-associated protein 25 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490745 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 2.3e-91
Identity = 174/203 (85.71%), Postives = 176/203 (86.70%), Query Frame = 0

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPV+DTREKQIQLWKELILDYCRTQKIFVIGLEE+FPLF
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60

Query: 61  SNSVIENIGFIICNLFILWSIVHWCGCDATGSLSHEARVAFLSALVSDGRAEWLDKGHRK 120
           SNSVIE                         SLSHEAR AFLSALVSDGRAEWLDKGHRK
Sbjct: 61  SNSVIER------------------------SLSHEARQAFLSALVSDGRAEWLDKGHRK 120

Query: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQL 180
           CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALK L
Sbjct: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKLL 179

Query: 181 EQKGKLAIFKGSSTDDEGIKFSV 204
           EQKGKLAIFKGSSTDDEGIKFSV
Sbjct: 181 EQKGKLAIFKGSSTDDEGIKFSV 179

BLAST of Carg23409 vs. TrEMBL
Match: tr|A0A0A0L1R7|A0A0A0L1R7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006740 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 8.9e-91
Identity = 172/203 (84.73%), Postives = 176/203 (86.70%), Query Frame = 0

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPV+DTREKQIQLWKELILDYCRTQKIFVIGLEE+FPLF
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLF 60

Query: 61  SNSVIENIGFIICNLFILWSIVHWCGCDATGSLSHEARVAFLSALVSDGRAEWLDKGHRK 120
           SNSVIE                         SLSHEAR AF+SALVSDGRAEWLDKGHRK
Sbjct: 61  SNSVIER------------------------SLSHEARQAFISALVSDGRAEWLDKGHRK 120

Query: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQL 180
           CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTEL+GIDRTILMRALK L
Sbjct: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLL 179

Query: 181 EQKGKLAIFKGSSTDDEGIKFSV 204
           EQKGKLAIFKGSSTDDEGIKFSV
Sbjct: 181 EQKGKLAIFKGSSTDDEGIKFSV 179

BLAST of Carg23409 vs. TrEMBL
Match: tr|A0A1R3JF65|A0A1R3JF65_9ROSI (ESCRT-II complex, vps25 subunit OS=Corchorus olitorius OX=93759 GN=COLO4_16920 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.9e-85
Identity = 161/203 (79.31%), Postives = 172/203 (84.73%), Query Frame = 0

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPV++TREKQ+QLWKELILDYCRTQKIFVIGLEEEFPLF
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVRETREKQVQLWKELILDYCRTQKIFVIGLEEEFPLF 60

Query: 61  SNSVIENIGFIICNLFILWSIVHWCGCDATGSLSHEARVAFLSALVSDGRAEWLDKGHRK 120
           SNSVIE                         +L+HEAR AFLSALVS+GRAEWLDKG RK
Sbjct: 61  SNSVIER------------------------TLTHEAREAFLSALVSEGRAEWLDKGRRK 120

Query: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQL 180
           CLILWHRIQDWADIIL+FVK+NG EDSVMTVEEIRSG+ESRGTEL GIDRTILMRALK L
Sbjct: 121 CLILWHRIQDWADIILNFVKDNGFEDSVMTVEEIRSGIESRGTELHGIDRTILMRALKLL 179

Query: 181 EQKGKLAIFKGSSTDDEGIKFSV 204
           EQKGKLAIFKG+S DDEG+KFSV
Sbjct: 181 EQKGKLAIFKGTSADDEGVKFSV 179

BLAST of Carg23409 vs. TrEMBL
Match: tr|A0A2I4H7U9|A0A2I4H7U9_9ROSI (vacuolar protein sorting-associated protein 25 OS=Juglans regia OX=51240 GN=LOC109014272 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.2e-84
Identity = 158/203 (77.83%), Postives = 171/203 (84.24%), Query Frame = 0

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPV+DTR+KQ+QLWKELILDYCRTQKIFV+GLEE+FPLF
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTRDKQVQLWKELILDYCRTQKIFVVGLEEDFPLF 60

Query: 61  SNSVIENIGFIICNLFILWSIVHWCGCDATGSLSHEARVAFLSALVSDGRAEWLDKGHRK 120
           SN V+E                         SLSHEAR AFL ALVS+GRAEWLDKGHRK
Sbjct: 61  SNPVVER------------------------SLSHEAREAFLLALVSEGRAEWLDKGHRK 120

Query: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQL 180
           CLILWHRIQ+WADIIL FVK+NGLEDSVMTVEEIRSG ESRGTEL GIDRTILMRAL+ L
Sbjct: 121 CLILWHRIQEWADIILSFVKDNGLEDSVMTVEEIRSGAESRGTELHGIDRTILMRALRLL 179

Query: 181 EQKGKLAIFKGSSTDDEGIKFSV 204
           EQKGKLAIFKG+STDDEG+KFS+
Sbjct: 181 EQKGKLAIFKGTSTDDEGVKFSL 179

BLAST of Carg23409 vs. TrEMBL
Match: tr|A0A2P4LUZ0|A0A2P4LUZ0_QUESU (Vacuolar protein sorting-associated protein 25 OS=Quercus suber OX=58331 GN=CFP56_33026 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 2.1e-84
Identity = 158/203 (77.83%), Postives = 170/203 (83.74%), Query Frame = 0

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVKDTREKQIQLWKELILDYCRTQKIFVIGLEEEFPLF 60
           MQKLGDFKLPHFFNYPPYFTLQPV+DTREKQ+QLWK+LILDYCRTQKIFVIGLEE+F LF
Sbjct: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQVQLWKDLILDYCRTQKIFVIGLEEDFALF 60

Query: 61  SNSVIENIGFIICNLFILWSIVHWCGCDATGSLSHEARVAFLSALVSDGRAEWLDKGHRK 120
           SN VIE                         SLSHEAR AFLSALVS+GRAEWLDK HRK
Sbjct: 61  SNPVIER------------------------SLSHEAREAFLSALVSEGRAEWLDKRHRK 120

Query: 121 CLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELQGIDRTILMRALKQL 180
           CLILWHR+QDWADII HFVK+NGLEDSVMTVEEIRSG+ESRGTEL GIDRTILMRAL+ L
Sbjct: 121 CLILWHRVQDWADIIFHFVKDNGLEDSVMTVEEIRSGIESRGTELHGIDRTILMRALRVL 179

Query: 181 EQKGKLAIFKGSSTDDEGIKFSV 204
           EQKGKLAIFKG+S DDEG+KFS+
Sbjct: 181 EQKGKLAIFKGTSADDEGVKFSM 179

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022949655.12.2e-9387.68vacuolar protein sorting-associated protein 25 [Cucurbita moschata] >XP_02300557... [more]
XP_023540532.16.5e-9387.19vacuolar protein sorting-associated protein 25 [Cucurbita pepo subsp. pepo][more]
XP_008448627.13.5e-9185.71PREDICTED: vacuolar protein sorting-associated protein 25 isoform X1 [Cucumis me... [more]
XP_004146105.11.3e-9084.73PREDICTED: vacuolar protein sorting-associated protein 25 isoform X1 [Cucumis sa... [more]
XP_022145259.18.7e-9083.74vacuolar protein sorting-associated protein 25 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT4G19003.23.0e-8474.38E2F/DP family winged-helix DNA-binding domain[more]
Match NameE-valueIdentityDescription
sp|Q8VZC9|VPS25_ARATH5.4e-8374.38Vacuolar protein sorting-associated protein 25 OS=Arabidopsis thaliana OX=3702 G... [more]
sp|Q6AX45|VPS25_XENLA1.2e-2935.03Vacuolar protein-sorting-associated protein 25 OS=Xenopus laevis OX=8355 GN=vps2... [more]
sp|Q6NWF4|VPS25_DANRE1.3e-2834.52Vacuolar protein-sorting-associated protein 25 OS=Danio rerio OX=7955 GN=vps25 P... [more]
sp|Q55GD9|VPS25_DICDI1.0e-2533.17Vacuolar protein-sorting-associated protein 25 OS=Dictyostelium discoideum OX=44... [more]
sp|Q9CQ80|VPS25_MOUSE3.3e-2432.49Vacuolar protein-sorting-associated protein 25 OS=Mus musculus OX=10090 GN=Vps25... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3BKR8|A0A1S3BKR8_CUCME2.3e-9185.71vacuolar protein sorting-associated protein 25 isoform X1 OS=Cucumis melo OX=365... [more]
tr|A0A0A0L1R7|A0A0A0L1R7_CUCSA8.9e-9184.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006740 PE=4 SV=1[more]
tr|A0A1R3JF65|A0A1R3JF65_9ROSI1.9e-8579.31ESCRT-II complex, vps25 subunit OS=Corchorus olitorius OX=93759 GN=COLO4_16920 P... [more]
tr|A0A2I4H7U9|A0A2I4H7U9_9ROSI1.2e-8477.83vacuolar protein sorting-associated protein 25 OS=Juglans regia OX=51240 GN=LOC1... [more]
tr|A0A2P4LUZ0|A0A2P4LUZ0_QUESU2.1e-8477.83Vacuolar protein sorting-associated protein 25 OS=Quercus suber OX=58331 GN=CFP5... [more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000814ESCRT II complex
Vocabulary: Biological Process
TermDefinition
GO:0071985multivesicular body sorting pathway
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR008570ESCRT-II_cplx_Vps25-sub
IPR036388WH-like_DNA-bd_sf
IPR014041ESCRT-II_cplx_Vps25-sub_N
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071985 multivesicular body sorting pathway
cellular_component GO:0000814 ESCRT II complex
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23409-RACarg23409-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014041ESCRT-II complex, Vps25 subunit, N-terminal winged helixGENE3DG3DSA:1.10.10.570coord: 4..68
e-value: 1.5E-18
score: 69.0
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3DG3DSA:1.10.10.10coord: 122..202
e-value: 2.4E-23
score: 83.6
IPR008570ESCRT-II complex, Vps25 subunitPFAMPF05871ESCRT-IIcoord: 92..169
e-value: 1.2E-18
score: 67.5
coord: 13..66
e-value: 1.9E-15
score: 57.2
IPR008570ESCRT-II complex, Vps25 subunitPANTHERPTHR13149VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25coord: 92..201
coord: 5..66
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILYSSF46785"Winged helix" DNA-binding domaincoord: 126..201
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILYSSF46785"Winged helix" DNA-binding domaincoord: 7..65

The following gene(s) are paralogous to this gene:

None