CsGy3G001130 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G001130
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	ATP-dependent RNA helicase Dbp73D isoform 1
Location	Chr3 : 836471 .. 838650 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTCTTCTTCTTCTTCTTCTTTGATTCAAGAGAGAGAAAACGACTTCTGTTTCTCTTTCGAACCAGTCGAGATCCGATCCTTATTGGGTTTTTAATTTTTTGGACTCTTTTATTTGTCTATGGCGTTTGGACTATTATAGAGAGAGAAATTGAGAGACCCTTTGAAGTAGATAGAGTGAGAGAGGAGTTTATAGGGCAAAAGGCGGCGAGATCTCAATACCCATTTCATTTGTTGTGAGTAACTTTTGTTTTGGGTCTTTTATCGAACAGATGGTAGGCATTTTTTCAAGATTTTCTTCTAGCAGAACAGGGCATCGACGAGCGCAAAGTGCCCTTGTAAGTAGGCGAATTAAGTTGATTTTTATTTGCTTGTACTATCTCGAATCTGTGTATTGCCATGAATCTGTGGCTGTTTGTTTCCCTTTTGAGGTTTCGAAGTGATGGGTTATCCACTGATTGTTATATATCTTGCGCTTGAGATTATCGGTTCTGTTTTTGAAGAATCTGAACTTAATTTTCATTTCCTGGTTTTTTCGTGGCTGCTAGATTGGTTGACTTTTGATAAATTGGATTCTTACTTGCGTTGTTGTGGTGGAGAATACGATTCTATGAGGCATTTTTGTAGAATTCTTTGACTTGGGTCATCTGAAACTCGAATCTAGTGCTGATTTTTGGTCTTTTTTTTTTTATAAAAAAAATAATATTAATCATAATAAAGGTTGTTTATTCCGTAGTAATGGATCAGTTAAGCTTTTATGCTTCTGATTTCCATGGTTGTTTCAAGATTTCATCATATTTTCTATTTTACTTGTCCTGTTTTACTTTGAAACTTTAATGGAGGTAAGGAAATTACCATCTGGGTTCATGTTTTCTTTTACTCTTTTAGGTTTGTTAAACATTTATTTGGATATTTTGGGTATTTTTTATGTTAATAAAGTGTGTTCATATGGTGCAGGATGGGAGAGAAGGACTGCCTCCAAATCCAGAGAGCACTGGTGTTAGTGCTACTTCTGCTACTGCTTCTCATGGAATTGAAGTAGCAGTGGAGTTCAAGCCTGTTGAGCATCCAATTGAGCCTCTGGACAACGATCAGCCAATTCAGTGCCCATTGCCTGAACCTTCTATTCTGAATGTAAGCTGCATAGTTGATCTTGAACAATTTTGTTCAGTTTAATGTCCATCTGATCAATTATATATCTAGTTGCTTTATTGCATATATTATGTATATATGTCCAAGGGTGAAAGAGGCAGCAATTGATGGGTATCAATCCCTGAAGTCGTTTATTCATAGATTCATTTCGGGAAGTCTATTCGTGATTTTAAAGATGATATCTAGAAACTGTATAAGAAAAAGAAACCGGTATGGTAAGCATCATAAAGTAGAGTTGTCCTGTATAATAATCATAAACTTATTGCACAAAATGATCAGTTCCACCTGAAGTAACCTTTTCTTACCCCACCCCAATCATAGGATTCATATGACTACACGGTCTTGAATTATGCTTATTGCTGAATAATCTGTATCAAACACGTTGGAATGCTAGATTCTAGTAATTTTCCTTCCAGACTAGTATGTGGACAAATTGTTGTGATCTTGTAAATGTGAAATTTCAAATCTTTGTTGCCCCTCTTGAAACCATTGAAAACTCTGATTGAATATAATATTTATGATAGATGAAATTTGAAAGCCATGAAGCTGATTTTGGTTGAACTAATTGTTAGAGAATTGTGATGTTGTTGGCTTCCTTATTGATTTATCAAACCTATCACTACTAAAAGTTGTAGGTTTGTGTTATATTTTGAGATCTGATTTTGAACTCCTAACCCACTAGGATGGAAGAATATGGAAGGAACGTGTATCAAGTATGCGAAAACTGCCAGATTTACCCGTCATGAAAGAAGCTGAAGTCGGCGAGACAAGACCACGACCAACACGCACAATCTTACCATCTATCAGTGCTCCTGAACATAACATCCTAAACCTACTTGAGGAATCCGGGATATAGCACAACTAATTACTCTTCTCATCTGGAATTTAGAGTTCCCTATACAATATTTTTTAAAGTTTTCATCCCCTCCCCCTAAAATTTTTACCTTTATTGTTATTTCATGTACAATGTCATGTCACGGGTTCAGTGTTTACATAATATATCAGAAATTTAGTGTTCAAATCTTCAA

mRNA sequence

TTCTTCTTCTTCTTCTTCTTCTTTGATTCAAGAGAGAGAAAACGACTTCTGTTTCTCTTTCGAACCAGTCGAGATCCGATCCTTATTGGGTTTTTAATTTTTTGGACTCTTTTATTTGTCTATGGCGTTTGGACTATTATAGAGAGAGAAATTGAGAGACCCTTTGAAGTAGATAGAGTGAGAGAGGAGTTTATAGGGCAAAAGGCGGCGAGATCTCAATACCCATTTCATTTGTTGTGAGTAACTTTTGTTTTGGGTCTTTTATCGAACAGATGGTAGGCATTTTTTCAAGATTTTCTTCTAGCAGAACAGGGCATCGACGAGCGCAAAGTGCCCTTGATGGGAGAGAAGGACTGCCTCCAAATCCAGAGAGCACTGGTGTTAGTGCTACTTCTGCTACTGCTTCTCATGGAATTGAAGTAGCAGTGGAGTTCAAGCCTGTTGAGCATCCAATTGAGCCTCTGGACAACGATCAGCCAATTCAGTGCCCATTGCCTGAACCTTCTATTCTGAATGATGGAAGAATATGGAAGGAACGTGTATCAAGTATGCGAAAACTGCCAGATTTACCCGTCATGAAAGAAGCTGAAGTCGGCGAGACAAGACCACGACCAACACGCACAATCTTACCATCTATCAGTGCTCCTGAACATAACATCCTAAACCTACTTGAGGAATCCGGGATATAGCACAACTAATTACTCTTCTCATCTGGAATTTAGAGTTCCCTATACAATATTTTTTAAAGTTTTCATCCCCTCCCCCTAAAATTTTTACCTTTATTGTTATTTCATGTACAATGTCATGTCACGGGTTCAGTGTTTACATAATATATCAGAAATTTAGTGTTCAAATCTTCAA

Coding sequence (CDS)

ATGGTAGGCATTTTTTCAAGATTTTCTTCTAGCAGAACAGGGCATCGACGAGCGCAAAGTGCCCTTGATGGGAGAGAAGGACTGCCTCCAAATCCAGAGAGCACTGGTGTTAGTGCTACTTCTGCTACTGCTTCTCATGGAATTGAAGTAGCAGTGGAGTTCAAGCCTGTTGAGCATCCAATTGAGCCTCTGGACAACGATCAGCCAATTCAGTGCCCATTGCCTGAACCTTCTATTCTGAATGATGGAAGAATATGGAAGGAACGTGTATCAAGTATGCGAAAACTGCCAGATTTACCCGTCATGAAAGAAGCTGAAGTCGGCGAGACAAGACCACGACCAACACGCACAATCTTACCATCTATCAGTGCTCCTGAACATAACATCCTAAACCTACTTGAGGAATCCGGGATATAG

Protein sequence

MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI

Homology

[Close]

BLAST of CsGy3G001130 vs. NCBI nr
Match: XP_004146112.1 (PREDICTED: uncharacterized protein LOC101208810 [Cucumis sativus] >KGN55710.1 hypothetical protein Csa_3G006710 [Cucumis sativus])

HSP 1 Score: 276.6 bits (706), Expect = 4.7e-71
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHP 60
           MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHP
Sbjct: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHP 60

Query: 61  IEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILP 120
           IEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILP
Sbjct: 61  IEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILP 120

Query: 121 SISAPEHNILNLLEESGI 139
           SISAPEHNILNLLEESGI
Sbjct: 121 SISAPEHNILNLLEESGI 138

[Close]

BLAST of CsGy3G001130 vs. NCBI nr
Match: XP_008448622.1 (PREDICTED: uncharacterized protein LOC103490741 isoform X2 [Cucumis melo])

HSP 1 Score: 274.6 bits (701), Expect = 1.8e-70
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHP 60
           MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSA ASHGIEVAVEFKPVEHP
Sbjct: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHP 60

Query: 61  IEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILP 120
           IEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILP
Sbjct: 61  IEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILP 120

Query: 121 SISAPEHNILNLLEESGI 139
           SISAPEHNILNLLEESGI
Sbjct: 121 SISAPEHNILNLLEESGI 138

[Close]

BLAST of CsGy3G001130 vs. NCBI nr
Match: XP_022965310.1 (uncharacterized protein LOC111465213 isoform X1 [Cucurbita maxima] >XP_023552125.1 uncharacterized protein LOC111809886 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.8 bits (639), Expect = 2.8e-63
Identity = 126/138 (91.30%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHP 60
           MVGIFSRFSSSRTGHRRAQSALDG+ GLPPNPE+TGVSAT A  SHGIEVAVEFKPVEHP
Sbjct: 1   MVGIFSRFSSSRTGHRRAQSALDGK-GLPPNPENTGVSATPAAVSHGIEVAVEFKPVEHP 60

Query: 61  IEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILP 120
           IEP DND+PIQCPLPEPSILNDGRIWKERVSS+RKLPDLPVMKEAEVGETRPR TRTILP
Sbjct: 61  IEPHDNDKPIQCPLPEPSILNDGRIWKERVSSIRKLPDLPVMKEAEVGETRPRATRTILP 120

Query: 121 SISAPEHNILNLLEESGI 139
           SISAPEHNILNLL+ESG+
Sbjct: 121 SISAPEHNILNLLKESGM 137

[Close]

BLAST of CsGy3G001130 vs. NCBI nr
Match: XP_022923601.1 (uncharacterized protein LOC111431237 isoform X1 [Cucurbita moschata])

HSP 1 Score: 249.6 bits (636), Expect = 6.2e-63
Identity = 125/138 (90.58%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHP 60
           MVGIFSRFSSSRTGHRRAQSALDG+ GLPPNPE+TGVSAT A  SHGIEVAVEFKPVEHP
Sbjct: 1   MVGIFSRFSSSRTGHRRAQSALDGK-GLPPNPENTGVSATPAAVSHGIEVAVEFKPVEHP 60

Query: 61  IEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILP 120
           IEP DND+PIQCPLPEPSILNDGRIWKERVSS+RKLPDLPVMKEAEVG+TRPR TRTILP
Sbjct: 61  IEPHDNDKPIQCPLPEPSILNDGRIWKERVSSIRKLPDLPVMKEAEVGDTRPRATRTILP 120

Query: 121 SISAPEHNILNLLEESGI 139
           SISAPEHNILNLL+ESG+
Sbjct: 121 SISAPEHNILNLLKESGM 137

[Close]

BLAST of CsGy3G001130 vs. NCBI nr
Match: XP_022943295.1 (uncharacterized protein LOC111448107 isoform X1 [Cucurbita moschata])

HSP 1 Score: 248.8 bits (634), Expect = 1.1e-62
Identity = 124/139 (89.21%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVS-ATSATASHGIEVAVEFKPVEH 60
           MVGIFSRFSSSRTGHRRAQSALDGREGLP  PE+TGVS  T+A ASHGIEVAVEFKPVEH
Sbjct: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPSIPETTGVSDTTAAAASHGIEVAVEFKPVEH 60

Query: 61  PIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTIL 120
           PIEPLDND+PIQCPLPEPSILNDGRIWKERVSS+RK+PD+PVMKE E+GETRPR TRTIL
Sbjct: 61  PIEPLDNDRPIQCPLPEPSILNDGRIWKERVSSLRKMPDMPVMKEPEIGETRPRATRTIL 120

Query: 121 PSISAPEHNILNLLEESGI 139
           PS+SAPEHNILNLLEESGI
Sbjct: 121 PSMSAPEHNILNLLEESGI 139

[Close]

BLAST of CsGy3G001130 vs. TAIR10
Match: AT1G31940.1 (unknown protein)

HSP 1 Score: 172.2 bits (435), Expect = 2.3e-43
Identity = 92/146 (63.01%), Postives = 108/146 (73.97%), Query Frame = 0


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSA-TASHGIEVAVEFKPVEH 60
           MVGIFSRFS  R+ HRR QSA+D +E L PN +    + T+A TA+HGIEVA EFKPVEH
Sbjct: 1   MVGIFSRFSVGRSTHRRTQSAIDDKEVLAPNSDVIAATTTTATTATHGIEVATEFKPVEH 60

Query: 61  PIEPLDNDQPIQCPLPEPSILNDGRIWKERVS-SMRKLPDLPVMKEAEVGET-------- 120
           P+EPLDND PIQCPLPEPSILNDGRIWKERVS SMR+  DL ++K+    E+        
Sbjct: 61  PVEPLDNDLPIQCPLPEPSILNDGRIWKERVSASMRRKGDLQIVKDEAASESDGSAPKXX 120

Query: 121 -RPRPTRTILPSISAPEHNILNLLEE 136
                 R+ILPS+SAPEHN+LNLLEE
Sbjct: 121 XXXXXNRSILPSLSAPEHNLLNLLEE 146

[Close]

BLAST of CsGy3G001130 vs. TAIR10
Match: AT2G35585.1 (unknown protein)

HSP 1 Score: 166.8 bits (421), Expect = 9.6e-42
Identity = 90/149 (60.40%), Postives = 108/149 (72.48%), Query Frame = 0


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHP 60
           MVGIFSRFS  R  HRR QSA+DGRE L P  +    + T+ T +HGIEVA EFKPV+HP
Sbjct: 1   MVGIFSRFSVVRGSHRRTQSAIDGREVLSPRSDLAPATNTTTTETHGIEVATEFKPVDHP 60

Query: 61  IEPLDNDQPIQCPLPEPSILNDGRIWKERV--SSMRKLPDLPVM-----KEAEVGET--- 120
           +EPLDNDQPIQCPLPEPSILNDGR+WKERV  SSMR+  DL ++     +E++V  T   
Sbjct: 61  MEPLDNDQPIQCPLPEPSILNDGRLWKERVSASSMRRRSDLAIVQDGMDEESDVSVTSIP 120

Query: 121 ----RPRPTRTILPSISAPEHNILNLLEE 136
               +    R ILPS+SAPEH++LNLLEE
Sbjct: 121 SRTSQCNTNRPILPSLSAPEHDLLNLLEE 149

[Close]

BLAST of CsGy3G001130 vs. TAIR10
Match: AT2G01913.1 (unknown protein)

HSP 1 Score: 42.7 bits (99), Expect = 2.1e-04
Identity = 18/29 (62.07%), Postives = 23/29 (79.31%), Query Frame = 0


Query: 52 VEFKPVEHPIEPLDNDQPIQCPLPEPSIL 81
          VEF PVEHPIEP + D+P++CP+P  S L
Sbjct: 29 VEFCPVEHPIEPEEEDRPVKCPVPISSSL 57

[Close]

BLAST of CsGy3G001130 vs. TrEMBL
Match: tr|A0A0A0L159|A0A0A0L159_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006710 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 3.1e-71
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHP 60
           MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHP
Sbjct: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHP 60

Query: 61  IEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILP 120
           IEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILP
Sbjct: 61  IEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILP 120

Query: 121 SISAPEHNILNLLEESGI 139
           SISAPEHNILNLLEESGI
Sbjct: 121 SISAPEHNILNLLEESGI 138

[Close]

BLAST of CsGy3G001130 vs. TrEMBL
Match: tr|A0A1S3BL03|A0A1S3BL03_CUCME (uncharacterized protein LOC103490741 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490741 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.2e-70
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHP 60
           MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSA ASHGIEVAVEFKPVEHP
Sbjct: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHP 60

Query: 61  IEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILP 120
           IEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILP
Sbjct: 61  IEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILP 120

Query: 121 SISAPEHNILNLLEESGI 139
           SISAPEHNILNLLEESGI
Sbjct: 121 SISAPEHNILNLLEESGI 138

[Close]

BLAST of CsGy3G001130 vs. TrEMBL
Match: tr|A0A1S3BKR4|A0A1S3BKR4_CUCME (uncharacterized protein LOC103490741 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490741 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.3e-58
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 23  DGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILND 82
           DGREGLPPNPESTGVSATSA ASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILND
Sbjct: 29  DGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILND 88

Query: 83  GRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI 139
           GRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI
Sbjct: 89  GRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI 144

[Close]

BLAST of CsGy3G001130 vs. TrEMBL
Match: tr|A0A1S3ZHX6|A0A1S3ZHX6_TOBAC (uncharacterized protein LOC107786869 OS=Nicotiana tabacum OX=4097 GN=LOC107786869 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.0e-46
Identity = 102/147 (69.39%), Postives = 115/147 (78.23%), Query Frame = 0


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTG---VSATSATASHGIEVAVEFKPV 60
           MVGIFSRFS SR GHRRAQSAL   E LPPN E+TG   ++   +T  HGIE+AVEFKPV
Sbjct: 1   MVGIFSRFSVSRNGHRRAQSALGETEVLPPNTETTGAATIAGAPSTTPHGIEIAVEFKPV 60

Query: 61  EHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGE----TRPR 120
           EHP EPL ND+PIQCP+PEPSILNDGRIWKERVS++R+  D+PVM+E    E    TRPR
Sbjct: 61  EHPTEPLHNDRPIQCPIPEPSILNDGRIWKERVSAVRRRADIPVMQEGTTAEPEAGTRPR 120

Query: 121 P--TRTILPSISAPEHNILNLLEESGI 139
           P   R ILPSISAPEH+IL LLEESGI
Sbjct: 121 PPMNRVILPSISAPEHSILKLLEESGI 147

[Close]

BLAST of CsGy3G001130 vs. TrEMBL
Match: tr|B9MU90|B9MU90_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G135000v3 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.7e-46
Identity = 105/146 (71.92%), Postives = 114/146 (78.08%), Query Frame = 0


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHP 60
           MVGIFSRFS  R GHRR QSALD RE LPPN + TG +A  A A HGIEVAVEFKPVEHP
Sbjct: 1   MVGIFSRFSVGRGGHRRTQSALDEREVLPPNADVTGAAAVVAAAPHGIEVAVEFKPVEHP 60

Query: 61  IEPLDNDQPIQCPLPEPSILNDGRIWKERVS-SMRKLPDLPVMK-----EAEVGETRPRP 120
           IEPLDNDQPIQCPLPEPSILNDGR+WKERVS ++ +  DLPVMK     E+E  E+RPRP
Sbjct: 61  IEPLDNDQPIQCPLPEPSILNDGRLWKERVSATVHRRGDLPVMKEGGALESENVESRPRP 120

Query: 121 -----TRTILPSISAPEHNILNLLEE 136
                 R ILPSISAPEHN+L LLEE
Sbjct: 121 RPNQSNRLILPSISAPEHNLLKLLEE 146

The following BLAST results are available for this feature:

BLAST of CsGy3G001130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146112.1	4.7e-71	100.00	PREDICTED: uncharacterized protein LOC101208810 [Cucumis sativus] >KGN55710.1 hy...	[more]
XP_008448622.1	1.8e-70	99.28	PREDICTED: uncharacterized protein LOC103490741 isoform X2 [Cucumis melo]	[more]
XP_022965310.1	2.8e-63	91.30	uncharacterized protein LOC111465213 isoform X1 [Cucurbita maxima] >XP_023552125...	[more]
XP_022923601.1	6.2e-63	90.58	uncharacterized protein LOC111431237 isoform X1 [Cucurbita moschata]	[more]
XP_022943295.1	1.1e-62	89.21	uncharacterized protein LOC111448107 isoform X1 [Cucurbita moschata]	[more]

BLAST of CsGy3G001130 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31940.1	2.3e-43	63.01	unknown protein	[more]
AT2G35585.1	9.6e-42	60.40	unknown protein	[more]
AT2G01913.1	2.1e-04	62.07	unknown protein	[more]

BLAST of CsGy3G001130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G001130 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L159\|A0A0A0L159_CUCSA	3.1e-71	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006710 PE=4 SV=1	[more]
tr\|A0A1S3BL03\|A0A1S3BL03_CUCME	1.2e-70	99.28	uncharacterized protein LOC103490741 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3BKR4\|A0A1S3BKR4_CUCME	2.3e-58	99.14	uncharacterized protein LOC103490741 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3ZHX6\|A0A1S3ZHX6_TOBAC	2.0e-46	69.39	uncharacterized protein LOC107786869 OS=Nicotiana tabacum OX=4097 GN=LOC10778686...	[more]
tr\|B9MU90\|B9MU90_POPTR	2.7e-46	71.92	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G135000v3 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G001130.1	CsGy3G001130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..44
None	No IPR available	PANTHER	PTHR34196:SF2	SUBFAMILY NOT NAMED	coord: 1..136
None	No IPR available	PANTHER	PTHR34196	FAMILY NOT NAMED	coord: 1..136

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G001130	Cla008846	Watermelon (97103) v1	cgybwmB188
CsGy3G001130	Csa3G006710	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G001130	MELO3C013813	Melon (DHL92) v3.5.1	cgybmeB209
CsGy3G001130	ClCG10G001200	Watermelon (Charleston Gray)	cgybwcgB174
CsGy3G001130	CSPI03G01220	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G001130	CmaCh16G011980	Cucurbita maxima (Rimu)	cgybcmaB339
CsGy3G001130	CmaCh06G006160	Cucurbita maxima (Rimu)	cgybcmaB429
CsGy3G001130	CmoCh16G012450	Cucurbita moschata (Rifu)	cgybcmoB310
CsGy3G001130	CmoCh06G006230	Cucurbita moschata (Rifu)	cgybcmoB403
CsGy3G001130	Lsi07G011530	Bottle gourd (USVL1VR-Ls)	cgyblsiB217
CsGy3G001130	Cp4.1LG08g08840	Cucurbita pepo (Zucchini)	cgybcpeB456
CsGy3G001130	Cp4.1LG14g09950	Cucurbita pepo (Zucchini)	cgybcpeB325
CsGy3G001130	MELO3C013813.2	Melon (DHL92) v3.6.1	cgybmedB202
CsGy3G001130	CsaV3_3G001240	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G001130	Cla97C10G185820	Watermelon (97103) v2	cgybwmbB174
CsGy3G001130	Bhi07G000832	Wax gourd	cgybwgoB326
CsGy3G001130	Carg23414	Silver-seed gourd	carcgybB0951
CsGy3G001130	Carg23581	Silver-seed gourd	carcgybB1033

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G001130	Cucurbita maxima (Rimu)	cgybcmaB378
CsGy3G001130	Cucurbita maxima (Rimu)	cgybcmaB398
CsGy3G001130	Cucurbita moschata (Rifu)	cgybcmoB351
CsGy3G001130	Cucurbita moschata (Rifu)	cgybcmoB370
CsGy3G001130	Cucurbita pepo (Zucchini)	cgybcpeB334
CsGy3G001130	Cucurbita pepo (Zucchini)	cgybcpeB426
CsGy3G001130	Bottle gourd (USVL1VR-Ls)	cgyblsiB134
CsGy3G001130	Silver-seed gourd	carcgybB0775
CsGy3G001130	Wax gourd	cgybwgoB295