ClCG10G001200 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G001200
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	At1g31940/F5M6.6
Location	CG_Chr10 : 1223470 .. 1226473 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAATCAAATCCAAAATCACAAAACCCCATTCGTCAAGCAAAGCTACAACTTTGTTTTCCATCCAAACCAAACCTAACCTTTCGTTTTCCATAACCCAATTTGCCCTTCTTCTTCTTGTTCTTCTTCTTCTTTTCAATTCAAGAGAGAGAAAACGACTCCTGTCTTTTGGACTAGTCGAGATCCGATCCTTATTGGGTTTGAAAATTTTTGGACTCTTGTGTTTGTCTATGGCCTTTGGACTATTATAAAGAGAGAAATTGAGAGACCCTTTGAAGTACAGAGAGGGAGAGAGAGTGAGAGAGGAGTTTATAGGGCAAAAGGCGGCGAGATCTCAATACCCATTTCGTTTTTGCGAGTGATTTGTGTTTTGAGCCTTTTATCCGACAGATGGTGGGCATTTTTTCAAGGTTTTCTTCTAGCAAAACAGGGCATCGACGAGCGCAAAGTGCCCTTGTAAGTAGTTTCCTTATCTCTATTTAGCAAATGAAGATTGATTTTTATATGCTTCAACTATTTCGAATTTGTGTATTGCTATGAATCTTTCGTTTTTTGTTAGCCCTTTTGAGGTTTTGAATTGATGGGTTGTCGATGGATTGTTATATATCTTGCGATTGAGATTGTTGGTTCAAATTATTTTCTGAAGAATTTGAACTTATTTGTCGAAAGGTTCAAATAATTTTCATTTCCTGGGTTTTTCATGGCTGCTAGATTGGTTGACTTTTGATAAATTGGAATCTTACTTGCCTTGTTGTGGTGGAGAATATGATTCTTTTGGGCCATTTTGTAGAATTCTTTGACTTGGGTCATCTGAAACTCGAATCTAGTGCTAATTTTGGTCTTCTTTTTTTAAAATAAAATTAATAATAGTAAACGTTGTTGATTCCATAGTAGTGGACCAGTTGAGCTTTTATGCTTCTGATTTCCATGGCTGTTTCTGAGATCTTATCATATTTGCTATTTTACCTGTCCTGTTTTACTTTGAAACTTTGATGGAGGTAAGGAAATTACCATCTGGGTCAATGTTTTCTTTTACCTTTTGAGATTTGTTAAACATTTAGTTGGATATTTTGGGTAGTTTTGATGTCAATAAAGTTTGTTCATATGATGCAGGATGGGAGAGAAGGACTGCCTCCAAATCCAGAGAGCACTGGTGTCAGTGCTACCTCTGCTGCTGCTTCTCATGGAATTGAAGTAGCAGTGGAGTTCAAGCCTGTTGAACATCCAATTGAGCCTCTCGACAACGATAGGCCAATTCAGTGTCCATTGCCCGAACCGTCTATTCTGAATGTAAGCTGCAGAATTGATCTTCTTATACAATTTTGTTCAGTTTAATGCCCATCTGATCAATTATATATCTAGTTGATTTATTGCATATATTGACAATATATGGTCGAAGGCTGAAAGAGGCCAGTGTTTGATGGGTCTCAATTTCGGAAGTCGTTTATTCATAGATTCCTTTTGGGAAGTCTGTTCATGATTTTAGAGATGAGATTTATAACTGTACAAGAAGCCTGATATGGTAAGCATCATAAAGTAGAGATGTCCCTTATACTAAAGAGCAAAGGCAAACTTATTGCACAAAATCATGAGTTCCACCTGAAGTAACCATTTCTTAGCCCCCCCTCCCCCAATTATATGTACAAATGACGACACAGTCTCGAATTATGCTGGTTACTGAATCAGAACAGATAGTTGTGATTTTGTAAATATGAAAAATGTGAAAGATTCAAATTTGATTGTCCCTCCCTTAAGCTAATGAAAACTTTGGTTGAATATAACATTTATGATAGATGAAATTTGAAAGCCATGAAGCTGATTTTGGTTGAACTAATTGTTAGAGAATCATGATGTTGTTGGTTTCCTTATTGATGTACCAAACCTATCAGTGAAAGTTGTAGGTTGTGATATATCTTGAGATCTGATTTTGAACTCCTAAACCACTAGGATGGAAGAATATGGAAGGAACGTGTATCGAGTATACGAAAACTGCCAGATTTGCCTGTTATGAAAGAAGCTGAAGTCGGTGAGACAAGACCGCGGGCAACACGCACAATCTTACCATCTATCAGTGCTCCTGAACATAACATCCTAAACCTACTCGAGGAATCCGGGATATAGCGCAACTAATTACCTTCTCATCTGGAATTTAGAGTTTTCTATAGAATATTTTTTAAACTTTGCACCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATAAATATATCAGAAGTTTAGCGTTCAAATCTTCAACTTTCTATGTTATCTTTGTTAGTTTTGTTGTTCAGGTATTATTTTGTCATCGAGGTCCTGAAAGCTGAGGGGGATCGTTCGAGCACTCGAGAGTCGAGCTTATTGGTTTGGCATTGCAGACTTGTTTAATAATGGAAGAGGAAGATGATTGATGTTAGGTAAATACAACTCCCTGCACATGGCTCAAAAAGTTTGAAAGATTAGAGTTGCAAATTATGAATGGAAACATAGATGGATTTAGCTGGATATCAAATATTATGCATGAAAGGACCTTTACAGCTTCTTAGTTTTCTAAAATATTGGCTTTAGGATTTTCTAGGTGACCTAAAAAATGTGGGGATAGGACAACCTCGGTCCATTTGAG

mRNA sequence

AAAGAATCAAATCCAAAATCACAAAACCCCATTCGTCAAGCAAAGCTACAACTTTGTTTTCCATCCAAACCAAACCTAACCTTTCGTTTTCCATAACCCAATTTGCCCTTCTTCTTCTTGTTCTTCTTCTTCTTTTCAATTCAAGAGAGAGAAAACGACTCCTGTCTTTTGGACTAGTCGAGATCCGATCCTTATTGGGTTTGAAAATTTTTGGACTCTTGTGTTTGTCTATGGCCTTTGGACTATTATAAAGAGAGAAATTGAGAGACCCTTTGAAGTACAGAGAGGGAGAGAGAGTGAGAGAGGAGTTTATAGGGCAAAAGGCGGCGAGATCTCAATACCCATTTCGTTTTTGCGAGTGATTTGTGTTTTGAGCCTTTTATCCGACAGATGGTGGGCATTTTTTCAAGGTTTTCTTCTAGCAAAACAGGGCATCGACGAGCGCAAAGTGCCCTTGATGGGAGAGAAGGACTGCCTCCAAATCCAGAGAGCACTGGTGTCAGTGCTACCTCTGCTGCTGCTTCTCATGGAATTGAAGTAGCAGTGGAGTTCAAGCCTGTTGAACATCCAATTGAGCCTCTCGACAACGATAGGCCAATTCAGTGTCCATTGCCCGAACCGTCTATTCTGAATGATGGAAGAATATGGAAGGAACGTGTATCGAGTATACGAAAACTGCCAGATTTGCCTGTTATGAAAGAAGCTGAAGTCGGTGAGACAAGACCGCGGGCAACACGCACAATCTTACCATCTATCATTTTGTTGTATTATTTTGTCATCGAGGTCCTGAAAGCTGAGGGGGATCGTTCGAGCACTCGAGAGTCGAGCTTATTGGTTTGGCATTGCAGACTTGTTTAATAATGGAAGAGGAAGATGATTGATGTTAGGTAAATACAACTCCCTGCACATGGCTCAAAAAGTTTGAAAGATTAGAGTTGCAAATTATGAATGGAAACATAGATGGATTTAGCTGGATATCAAATATTATGCATGAAAGGACCTTTACAGCTTCTTAGTTTTCTAAAATATTGGCTTTAGGATTTTCTAGGTGACCTAAAAAATGTGGGGATAGGACAACCTCGGTCCATTTGAG

Coding sequence (CDS)

ATGGTGGGCATTTTTTCAAGGTTTTCTTCTAGCAAAACAGGGCATCGACGAGCGCAAAGTGCCCTTGATGGGAGAGAAGGACTGCCTCCAAATCCAGAGAGCACTGGTGTCAGTGCTACCTCTGCTGCTGCTTCTCATGGAATTGAAGTAGCAGTGGAGTTCAAGCCTGTTGAACATCCAATTGAGCCTCTCGACAACGATAGGCCAATTCAGTGTCCATTGCCCGAACCGTCTATTCTGAATGATGGAAGAATATGGAAGGAACGTGTATCGAGTATACGAAAACTGCCAGATTTGCCTGTTATGAAAGAAGCTGAAGTCGGTGAGACAAGACCGCGGGCAACACGCACAATCTTACCATCTATCATTTTGTTGTATTATTTTGTCATCGAGGTCCTGAAAGCTGAGGGGGATCGTTCGAGCACTCGAGAGTCGAGCTTATTGGTTTGGCATTGCAGACTTGTTTAA

Protein sequence

MVGIFSRFSSSKTGHRRAQSALDGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHPIEPLDNDRPIQCPLPEPSILNDGRIWKERVSSIRKLPDLPVMKEAEVGETRPRATRTILPSIILLYYFVIEVLKAEGDRSSTRESSLLVWHCRLV

Homology

[Close]

BLAST of ClCG10G001200 vs. TrEMBL
Match: A0A0A0L159_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006710 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 4.0e-61
Identity = 119/137 (86.86%), Postives = 127/137 (92.70%), Query Frame = 1


Query: 1   MVGIFSRFSSSKTGHRRAQSALDGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHP 60
           MVGIFSRFSSS+TGHRRAQSALDGREGLPPNPESTGVSATSA ASHGIEVAVEFKPVEHP
Sbjct: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHP 60

Query: 61  IEPLDNDRPIQCPLPEPSILNDGRIWKERVSSIRKLPDLPVMKEAEVGETRPRATRTILP 120
           IEPLDND+PIQCPLPEPSILNDGRIWKERVSS+RKLPDLPVMKEAEVGETRPR TRTILP
Sbjct: 61  IEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILP 120

Query: 121 SIILLYYFVIEVLKAEG 138
           SI    + ++ +L+  G
Sbjct: 121 SISAPEHNILNLLEESG 137

[Close]

BLAST of ClCG10G001200 vs. TrEMBL
Match: B9MU90_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s01740g PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.0e-40
Identity = 93/145 (64.14%), Postives = 110/145 (75.86%), Query Frame = 1


Query: 1   MVGIFSRFSSSKTGHRRAQSALDGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHP 60
           MVGIFSRFS  + GHRR QSALD RE LPPN + TG +A  AAA HGIEVAVEFKPVEHP
Sbjct: 1   MVGIFSRFSVGRGGHRRTQSALDEREVLPPNADVTGAAAVVAAAPHGIEVAVEFKPVEHP 60

Query: 61  IEPLDNDRPIQCPLPEPSILNDGRIWKERVS-SIRKLPDLPVMK-----EAEVGETRPR- 120
           IEPLDND+PIQCPLPEPSILNDGR+WKERVS ++ +  DLPVMK     E+E  E+RPR 
Sbjct: 61  IEPLDNDQPIQCPLPEPSILNDGRLWKERVSATVHRRGDLPVMKEGGALESENVESRPRP 120

Query: 121 ----ATRTILPSIILLYYFVIEVLK 135
               + R ILPSI    + ++++L+
Sbjct: 121 RPNQSNRLILPSISAPEHNLLKLLE 145

[Close]

BLAST of ClCG10G001200 vs. TrEMBL
Match: K4CMY5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.5e-39
Identity = 88/147 (59.86%), Postives = 105/147 (71.43%), Query Frame = 1


Query: 1   MVGIFSRFSSSKTGHRRAQSALDGREGLPPNPESTGVSATSAAAS---HGIEVAVEFKPV 60
           MVGIFSRFS S+TGHRRAQSALD  E LPPN E+ G    + A+S   HGIE+AVEFKPV
Sbjct: 1   MVGIFSRFSVSRTGHRRAQSALDETEVLPPNTETIGAVTLAGASSINPHGIEIAVEFKPV 60

Query: 61  EHPIEPLDNDRPIQCPLPEPSILNDGRIWKERVSSIRKLPDLPVMKEAEVG-------ET 120
           EHP EPL NDRPI CPLPEPSILNDGRIWKERVS++R+  D+PVM+E           + 
Sbjct: 61  EHPTEPLHNDRPILCPLPEPSILNDGRIWKERVSAVRRRADIPVMQEGTTAAPESAGTKP 120

Query: 121 RPRATRTILPSIILLYYFVIEVLKAEG 138
           RP   R ILPSI    + ++++L+  G
Sbjct: 121 RPSMNRVILPSISAPEHSILKLLEESG 147

[Close]

BLAST of ClCG10G001200 vs. TrEMBL
Match: A0A068UVV0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00034181001 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.3e-39
Identity = 90/147 (61.22%), Postives = 107/147 (72.79%), Query Frame = 1


Query: 1   MVGIFSRFSSSKTGHRRAQSALDGREGLPPNPESTG---VSATSAAASHGIEVAVEFKPV 60
           MVGIFSRFS SK GHRR+QSALD RE LPPN E+TG   ++  ++A +HGIE+AVEFKPV
Sbjct: 1   MVGIFSRFSVSKVGHRRSQSALDEREVLPPNLEATGAVTLAGATSATTHGIEIAVEFKPV 60

Query: 61  EHPIEPLDNDRPIQCPLPEPSILNDGRIWKERVSSIRKLPDLPVMKEAEVGE-------T 120
           EHPIEP DNDRPI CPLPEPSILNDGRIWKERVS+  +  DLPVM+E    E        
Sbjct: 61  EHPIEPHDNDRPIHCPLPEPSILNDGRIWKERVSAGARRSDLPVMQEGTAIEPETTGPKP 120

Query: 121 RPRATRTILPSIILLYYFVIEVLKAEG 138
           RP   R ILPSI    + ++++L+  G
Sbjct: 121 RPPPHRVILPSISAPEHNILKLLEESG 147

[Close]

BLAST of ClCG10G001200 vs. TrEMBL
Match: M5WCB0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012893mg PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.3e-39
Identity = 89/131 (67.94%), Postives = 100/131 (76.34%), Query Frame = 1


Query: 1   MVGIFSRFSSSKTGHRRAQSALDGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHP 60
           MVGIFSRFS S+  HRR QSA+D RE LPPN E TG +     ASHGIEVAVEFKPVEHP
Sbjct: 1   MVGIFSRFSVSRAAHRRTQSAIDEREVLPPNSEGTGSATAPITASHGIEVAVEFKPVEHP 60

Query: 61  IEPLDNDRPIQCPLPEPSILNDGRIWKERVS-SIRKLPDLPVMKE-----AEVGETRPRA 120
           IEPL+NDRPIQCPLPEPSILNDGR+WKERVS ++ +  DLPVMKE     +E   T+PR 
Sbjct: 61  IEPLNNDRPIQCPLPEPSILNDGRLWKERVSATVPRRGDLPVMKEGGSIDSEDSGTKPRQ 120

Query: 121 TRT---ILPSI 123
            RT   ILPS+
Sbjct: 121 KRTNRMILPSL 131

[Close]

BLAST of ClCG10G001200 vs. TAIR10
Match: AT1G31940.1 (AT1G31940.1 unknown protein)

HSP 1 Score: 149.4 bits (376), Expect = 1.8e-36
Identity = 78/133 (58.65%), Postives = 94/133 (70.68%), Query Frame = 1


Query: 1   MVGIFSRFSSSKTGHRRAQSALDGREGLPPNPESTGVSATSA-AASHGIEVAVEFKPVEH 60
           MVGIFSRFS  ++ HRR QSA+D +E L PN +    + T+A  A+HGIEVA EFKPVEH
Sbjct: 1   MVGIFSRFSVGRSTHRRTQSAIDDKEVLAPNSDVIAATTTTATTATHGIEVATEFKPVEH 60

Query: 61  PIEPLDNDRPIQCPLPEPSILNDGRIWKERVS-SIRKLPDLPVMKEAEVGET-------- 120
           P+EPLDND PIQCPLPEPSILNDGRIWKERVS S+R+  DL ++K+    E+        
Sbjct: 61  PVEPLDNDLPIQCPLPEPSILNDGRIWKERVSASMRRKGDLQIVKDEAASESDGSAPKPP 120

Query: 121 -RPRATRTILPSI 123
             P+  R+ILPS+
Sbjct: 121 RPPQPNRSILPSL 133

[Close]

BLAST of ClCG10G001200 vs. TAIR10
Match: AT2G35585.1 (AT2G35585.1 unknown protein)

HSP 1 Score: 141.4 bits (355), Expect = 4.8e-34
Identity = 75/136 (55.15%), Postives = 92/136 (67.65%), Query Frame = 1


Query: 1   MVGIFSRFSSSKTGHRRAQSALDGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHP 60
           MVGIFSRFS  +  HRR QSA+DGRE L P  +    + T+   +HGIEVA EFKPV+HP
Sbjct: 1   MVGIFSRFSVVRGSHRRTQSAIDGREVLSPRSDLAPATNTTTTETHGIEVATEFKPVDHP 60

Query: 61  IEPLDNDRPIQCPLPEPSILNDGRIWKERV--SSIRKLPDLPVM-----KEAEVGET--- 120
           +EPLDND+PIQCPLPEPSILNDGR+WKERV  SS+R+  DL ++     +E++V  T   
Sbjct: 61  MEPLDNDQPIQCPLPEPSILNDGRLWKERVSASSMRRRSDLAIVQDGMDEESDVSVTSIP 120

Query: 121 ----RPRATRTILPSI 123
               +    R ILPS+
Sbjct: 121 SRTSQCNTNRPILPSL 136

[Close]

BLAST of ClCG10G001200 vs. NCBI nr
Match: gi|659095515|ref|XP_008448622.1| (PREDICTED: uncharacterized protein LOC103490741 isoform X2 [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 2.0e-61
Identity = 120/137 (87.59%), Postives = 128/137 (93.43%), Query Frame = 1


Query: 1   MVGIFSRFSSSKTGHRRAQSALDGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHP 60
           MVGIFSRFSSS+TGHRRAQSALDGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHP
Sbjct: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHP 60

Query: 61  IEPLDNDRPIQCPLPEPSILNDGRIWKERVSSIRKLPDLPVMKEAEVGETRPRATRTILP 120
           IEPLDND+PIQCPLPEPSILNDGRIWKERVSS+RKLPDLPVMKEAEVGETRPR TRTILP
Sbjct: 61  IEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILP 120

Query: 121 SIILLYYFVIEVLKAEG 138
           SI    + ++ +L+  G
Sbjct: 121 SISAPEHNILNLLEESG 137

[Close]

BLAST of ClCG10G001200 vs. NCBI nr
Match: gi|449456751|ref|XP_004146112.1| (PREDICTED: uncharacterized protein LOC101208810 [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 5.7e-61
Identity = 119/137 (86.86%), Postives = 127/137 (92.70%), Query Frame = 1


Query: 1   MVGIFSRFSSSKTGHRRAQSALDGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHP 60
           MVGIFSRFSSS+TGHRRAQSALDGREGLPPNPESTGVSATSA ASHGIEVAVEFKPVEHP
Sbjct: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHP 60

Query: 61  IEPLDNDRPIQCPLPEPSILNDGRIWKERVSSIRKLPDLPVMKEAEVGETRPRATRTILP 120
           IEPLDND+PIQCPLPEPSILNDGRIWKERVSS+RKLPDLPVMKEAEVGETRPR TRTILP
Sbjct: 61  IEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILP 120

Query: 121 SIILLYYFVIEVLKAEG 138
           SI    + ++ +L+  G
Sbjct: 121 SISAPEHNILNLLEESG 137

[Close]

BLAST of ClCG10G001200 vs. NCBI nr
Match: gi|659095513|ref|XP_008448621.1| (PREDICTED: uncharacterized protein LOC103490741 isoform X1 [Cucumis melo])

HSP 1 Score: 203.8 bits (517), Expect = 2.2e-49
Identity = 99/115 (86.09%), Postives = 106/115 (92.17%), Query Frame = 1


Query: 23  DGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHPIEPLDNDRPIQCPLPEPSILND 82
           DGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHPIEPLDND+PIQCPLPEPSILND
Sbjct: 29  DGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILND 88

Query: 83  GRIWKERVSSIRKLPDLPVMKEAEVGETRPRATRTILPSIILLYYFVIEVLKAEG 138
           GRIWKERVSS+RKLPDLPVMKEAEVGETRPR TRTILPSI    + ++ +L+  G
Sbjct: 89  GRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESG 143

[Close]

BLAST of ClCG10G001200 vs. NCBI nr
Match: gi|743809240|ref|XP_011018460.1| (PREDICTED: uncharacterized protein LOC105121500 [Populus euphratica])

HSP 1 Score: 173.3 bits (438), Expect = 3.3e-40
Identity = 93/145 (64.14%), Postives = 111/145 (76.55%), Query Frame = 1


Query: 1   MVGIFSRFSSSKTGHRRAQSALDGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHP 60
           MVGIFSRFS  + GHRR QSALD RE LPPN + TG +A +AAA HGIEVAVEFKPVEHP
Sbjct: 1   MVGIFSRFSVGRGGHRRTQSALDEREVLPPNADVTGAAAVAAAAPHGIEVAVEFKPVEHP 60

Query: 61  IEPLDNDRPIQCPLPEPSILNDGRIWKERVS-SIRKLPDLPVMK-----EAEVGETRPR- 120
           IEPLDND+PIQCPLPEPSILNDGR+WKERVS ++ +  DLPVMK     E+E  E+RPR 
Sbjct: 61  IEPLDNDQPIQCPLPEPSILNDGRLWKERVSATVHRRGDLPVMKEGGALESENVESRPRP 120

Query: 121 ----ATRTILPSIILLYYFVIEVLK 135
               + R ILPSI    + ++++L+
Sbjct: 121 RPNQSNRLILPSISAPEHNLLKLLE 145

[Close]

BLAST of ClCG10G001200 vs. NCBI nr
Match: gi|566146649|ref|XP_006368336.1| (hypothetical protein POPTR_0001s01740g [Populus trichocarpa])

HSP 1 Score: 172.2 bits (435), Expect = 7.2e-40
Identity = 93/145 (64.14%), Postives = 110/145 (75.86%), Query Frame = 1


Query: 1   MVGIFSRFSSSKTGHRRAQSALDGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHP 60
           MVGIFSRFS  + GHRR QSALD RE LPPN + TG +A  AAA HGIEVAVEFKPVEHP
Sbjct: 1   MVGIFSRFSVGRGGHRRTQSALDEREVLPPNADVTGAAAVVAAAPHGIEVAVEFKPVEHP 60

Query: 61  IEPLDNDRPIQCPLPEPSILNDGRIWKERVS-SIRKLPDLPVMK-----EAEVGETRPR- 120
           IEPLDND+PIQCPLPEPSILNDGR+WKERVS ++ +  DLPVMK     E+E  E+RPR 
Sbjct: 61  IEPLDNDQPIQCPLPEPSILNDGRLWKERVSATVHRRGDLPVMKEGGALESENVESRPRP 120

Query: 121 ----ATRTILPSIILLYYFVIEVLK 135
               + R ILPSI    + ++++L+
Sbjct: 121 RPNQSNRLILPSISAPEHNLLKLLE 145

The following BLAST results are available for this feature:

BLAST of ClCG10G001200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L159_CUCSA	4.0e-61	86.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006710 PE=4 SV=1	[more]
B9MU90_POPTR	5.0e-40	64.14	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s01740g PE=4 SV=1	[more]
K4CMY5_SOLLC	2.5e-39	59.86	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A068UVV0_COFCA	3.3e-39	61.22	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00034181001 PE=4 SV=1	[more]
M5WCB0_PRUPE	7.3e-39	67.94	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012893mg PE=4 SV=1	[more]

BLAST of ClCG10G001200 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31940.1	1.8e-36	58.65	unknown protein	[more]
AT2G35585.1	4.8e-34	55.15	unknown protein	[more]

BLAST of ClCG10G001200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095515\|ref\|XP_008448622.1\|	2.0e-61	87.59	PREDICTED: uncharacterized protein LOC103490741 isoform X2 [Cucumis melo]	[more]
gi\|449456751\|ref\|XP_004146112.1\|	5.7e-61	86.86	PREDICTED: uncharacterized protein LOC101208810 [Cucumis sativus]	[more]
gi\|659095513\|ref\|XP_008448621.1\|	2.2e-49	86.09	PREDICTED: uncharacterized protein LOC103490741 isoform X1 [Cucumis melo]	[more]
gi\|743809240\|ref\|XP_011018460.1\|	3.3e-40	64.14	PREDICTED: uncharacterized protein LOC105121500 [Populus euphratica]	[more]
gi\|566146649\|ref\|XP_006368336.1\|	7.2e-40	64.14	hypothetical protein POPTR_0001s01740g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G001200.1	ClCG10G001200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34196	FAMILY NOT NAMED	coord: 1..131 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G001200	Csa3G006710	Cucumber (Chinese Long) v2	cuwcgB189
ClCG10G001200	MELO3C013813	Melon (DHL92) v3.5.1	mewcgB415
ClCG10G001200	Cla008846	Watermelon (97103) v1	wcgwmB056
ClCG10G001200	Cla97C10G185820	Watermelon (97103) v2	wcgwmbB038
ClCG10G001200	Bhi07G000832	Wax gourd	wcgwgoB128
ClCG10G001200	CSPI03G01220	Wild cucumber (PI 183967)	cpiwcgB190
ClCG10G001200	Cucsa.322190	Cucumber (Gy14) v1	cgywcgB556
ClCG10G001200	CmaCh16G011980	Cucurbita maxima (Rimu)	cmawcgB284
ClCG10G001200	CmaCh06G006160	Cucurbita maxima (Rimu)	cmawcgB721
ClCG10G001200	CmoCh06G006230	Cucurbita moschata (Rifu)	cmowcgB724
ClCG10G001200	CmoCh16G012450	Cucurbita moschata (Rifu)	cmowcgB276
ClCG10G001200	Lsi07G011530	Bottle gourd (USVL1VR-Ls)	lsiwcgB389
ClCG10G001200	Cp4.1LG14g09950	Cucurbita pepo (Zucchini)	cpewcgB193
ClCG10G001200	Cp4.1LG08g08840	Cucurbita pepo (Zucchini)	cpewcgB772
ClCG10G001200	CsGy3G001130	Cucumber (Gy14) v2	cgybwcgB174
ClCG10G001200	MELO3C013813.2	Melon (DHL92) v3.6.1	medwcgB401
ClCG10G001200	Carg23581	Silver-seed gourd	carwcgB1021
ClCG10G001200	Carg23414	Silver-seed gourd	carwcgB0941
ClCG10G001200	CsaV3_3G001240	Cucumber (Chinese Long) v3	cucwcgB194

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G001200	Wax gourd	wcgwgoB113
ClCG10G001200	Cucurbita maxima (Rimu)	cmawcgB452
ClCG10G001200	Cucurbita maxima (Rimu)	cmawcgB515
ClCG10G001200	Cucurbita moschata (Rifu)	cmowcgB453
ClCG10G001200	Cucurbita moschata (Rifu)	cmowcgB513
ClCG10G001200	Cucurbita pepo (Zucchini)	cpewcgB227
ClCG10G001200	Cucurbita pepo (Zucchini)	cpewcgB631
ClCG10G001200	Bottle gourd (USVL1VR-Ls)	lsiwcgB001
ClCG10G001200	Silver-seed gourd	carwcgB0754