Cp4.1LG08g08840 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g08840
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	ATP-dependent RNA helicase Dbp73D isoform 1
Location	Cp4.1LG08 : 7005365 .. 7007751 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACTTCGCATAAAAGAAAAGGAATCAAAAGCCCCATTCGTTAAGTAAAGCGCTACGCGCAGTTTTCATCATCCAAATCGCAGCTATAAGTTCATCTTCTTGTTCTCTCTCCTGAATTGAAGAGAGAGAAAGCGACTTCTGTTTCTCTGTTGGATTGGTCGTGATCCGATCCTTACTGGGTTTGAAATTTTTTGGACTCGTTGTGTTTGTCCATGGCCTCTGCTGCTGCACTATTTTAAAGGGAATTAGAGACCCTGAGAGAGAGATTTCAATATCTATTTCGTTTTTGTGAGTAATTTTTGTTTTGGGCATTTTGTCGAACAGATGGTGGGCATATTTTCAAGGTTTTCATCTAGTAGAACAGGGCATCGACGAGCTCAAAGTGCACTTGTAAGTTGCTTCTTCTCTTTATTTGAATTTGTCTTTTGTTATGAATTGGTCGCTCTTTCTATGGGGATTTTGAGGAATTTAAGCTATGGGTTTGATGATCGATTGTTCTTTCTGTTTCTAAAGAATCTGAACTTGTTCTGTTCTCTTGATTTGCTGTTTCTTGTCTAAACGTTTGAAGTGTATACCATTTCTTGGTTGTTCATGGCTGCTAGATTGGTTGACTTTTAGCGAATTGGAATCTGTACTCGCCATTTTTGTAGAATTCTTTGACTTAGGTCATATGAAACTCGAATCTAGTGCTGATTTTGGTCTATTTTTTTAAAAAAGAATCGATTCCATGGCTGTTTCTGAGATCTTTTCATACTTGATCTTTTACCTGTCCTGTTCTACTCAGGAAATTACCATCTGGGTCATTGTTTTTCTTTACTTTTGTGGATTTGTTGAACATTTAGTAGGATATTTAGGTAAATTTTGATGCAGGATGGAAGAGAAGGACTGCCTTCAATCCCAGAAAGTACTGGTGTTAGTGATACCACTGCTGCTGCTGCTTCTCATGGAATTGAAGTGGCTGTGGAGTTCAAGCCTGTTGAACACCCGATCGAGCCTCTCGACAACGACAGGCCAATTCAGTGCCCGTTGCCTGAACCGTCTATTCTGAATGTAAGCTGCAGACTCGATCTTCTTATACAATTTTGTTTGGCTTAATCCCTATTTAATTGATTATACTGTGAGATCCCATGTCGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGGAACCTCTCTCTAACGTTTTAAAACCTTGAGGGGAAGCACATAAGGGAAACCCAAAGAGCACTATGTGCTAGCGTTGAGCGTGAGAGCCAGACATCGGGTGGTGTGCCAGCGAGGACGCTGGGCCCCGAAGAGGGGTGGATTGTGAGATCTCACATCGGTTGGAGAGGGGAACGAAACATTCCTTACAAGGGTGTGAAAACCTCTCTCTAACAGACGCGTTTTAAAATCTTAAGGTGCAGCGTAGCTGGAAAAGTCCAAAAAGGACAATACCTACTAGCGGTAGGCTTGGGCTATTACATATCTAGTTACCTTATTGCATATATTGATGTATATATGTCCACGGGCTAATAGAAAGGCCAAAGACTTATCTGATTAAGTGTTTGGTAGGGCACGATCTCGACTCAAAAGTTGCTTATTCATATATTCCTTTTGGAAAGTCTATTCATGATTTTAAAGATGAGATTTAGAACCGTAGAAAAGACCAATACGATAAGCATCATGAAGTAAAGATGTTCCTTGTTCCTTTATATTAAAGAACAAACTCATTGCATACACTCATAAGTGATTATAGTCTACACGGTCTCGAGTTATGTTGATCACTCGATCATTTGTATTGAACGTGTTGGAATGCTAGATTTCGATATACCTATTGACGAACTTTGATCGTAAATCAAATTTGAAAGCCATGAAGCTGATCTTGATTGAACTAGTCAAAGAAGAATTATGATGTTGTTGGCTTCGTTGTTAATTTTCTTAACTTATTAGTGGAAGTTGTAGGTTTGTGATATGTATTGAGATCTGATTTTGAACTCCTCGACCACTAGGACGGAAGAATATGGAAGGAACGAGTATCGAGTCTTCGAAGAATGCCAGATATGCCTGTCATGAAAGAACCCGAAATTTGTGAGACTAGATCACGGGCAACACGGACAATCTTACCATCAATGAGTGCTCCTGAACATAACATCCTAAACCTACTCGAGGAATCCGGGATATAGCACGACTAATTACTTCTCATATGGAGTCTAGAGTTGCCTANCCCCCCCCCCCCCCCCCCATCTTTACCTTTATTATTGTTTTTCCATGTACAATACCATGTCACAAGTTAAGTGTTTACATAGTATATCAACATTTCTTATAAGGGTGTGACAACCTTTCCCTAGAAAACGCGTTTTAAAATCGTGAGACTGATGATATTACGTAATGGGCCAAAGC

mRNA sequence

TACTTCGCATAAAAGAAAAGGAATCAAAAGCCCCATTCGTTAAGTAAAGCGCTACGCGCAGTTTTCATCATCCAAATCGCAGCTATAAGTTCATCTTCTTGTTCTCTCTCCTGAATTGAAGAGAGAGAAAGCGACTTCTGTTTCTCTGTTGGATTGGTCGTGATCCGATCCTTACTGGGTTTGAAATTTTTTGGACTCGTTGTGTTTGTCCATGGCCTCTGCTGCTGCACTATTTTAAAGGGAATTAGAGACCCTGAGAGAGAGATTTCAATATCTATTTCGTTTTTGTGAGTAATTTTTGTTTTGGGCATTTTGTCGAACAGATGGTGGGCATATTTTCAAGGTTTTCATCTAGTAGAACAGGGCATCGACGAGCTCAAAGTGCACTTGATGGAAGAGAAGGACTGCCTTCAATCCCAGAAAGTACTGGTGTTAGTGATACCACTGCTGCTGCTGCTTCTCATGGAATTGAAGTGGCTGTGGAGTTCAAGCCTGTTGAACACCCGATCGAGCCTCTCGACAACGACAGGCCAATTCAGTGCCCGTTGCCTGAACCGTCTATTCTGAATGACGGAAGAATATGGAAGGAACGAGTATCGAGTCTTCGAAGAATGCCAGATATGCCTGTCATGAAAGAACCCGAAATTTGTGAGACTAGATCACGGGCAACACGGACAATCTTACCATCAATGAGTGCTCCTGAACATAACATCCTAAACCTACTCGAGGAATCCGGGATATAGCACGACTAATTACTTCTCATATGGAGTCTAGAGTTGCCTANCCCCCCCCCCCCCCCCCCATCTTTACCTTTATTATTGTTTTTCCATGTACAATACCATGTCACAAGTTAAGTGTTTACATAGTATATCAACATTTCTTATAAGGGTGTGACAACCTTTCCCTAGAAAACGCGTTTTAAAATCGTGAGACTGATGATATTACGTAATGGGCCAAAGC

Coding sequence (CDS)

ATGGTGGGCATATTTTCAAGGTTTTCATCTAGTAGAACAGGGCATCGACGAGCTCAAAGTGCACTTGATGGAAGAGAAGGACTGCCTTCAATCCCAGAAAGTACTGGTGTTAGTGATACCACTGCTGCTGCTGCTTCTCATGGAATTGAAGTGGCTGTGGAGTTCAAGCCTGTTGAACACCCGATCGAGCCTCTCGACAACGACAGGCCAATTCAGTGCCCGTTGCCTGAACCGTCTATTCTGAATGACGGAAGAATATGGAAGGAACGAGTATCGAGTCTTCGAAGAATGCCAGATATGCCTGTCATGAAAGAACCCGAAATTTGTGAGACTAGATCACGGGCAACACGGACAATCTTACCATCAATGAGTGCTCCTGAACATAACATCCTAAACCTACTCGAGGAATCCGGGATATAG

Protein sequence

MVGIFSRFSSSRTGHRRAQSALDGREGLPSIPESTGVSDTTAAAASHGIEVAVEFKPVEHPIEPLDNDRPIQCPLPEPSILNDGRIWKERVSSLRRMPDMPVMKEPEICETRSRATRTILPSMSAPEHNILNLLEESGI

Homology

[Close]

BLAST of Cp4.1LG08g08840 vs. TrEMBL
Match: A0A0A0L159_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006710 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.1e-61
Identity = 122/139 (87.77%), Postives = 130/139 (93.53%), Query Frame = 1


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPSIPESTGVSDTTAAAASHGIEVAVEFKPVEH 60
           MVGIFSRFSSSRTGHRRAQSALDGREGLP  PESTGVS  T+A ASHGIEVAVEFKPVEH
Sbjct: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVS-ATSATASHGIEVAVEFKPVEH 60

Query: 61  PIEPLDNDRPIQCPLPEPSILNDGRIWKERVSSLRRMPDMPVMKEPEICETRSRATRTIL 120
           PIEPLDND+PIQCPLPEPSILNDGRIWKERVSS+R++PD+PVMKE E+ ETR R TRTIL
Sbjct: 61  PIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTIL 120

Query: 121 PSMSAPEHNILNLLEESGI 140
           PS+SAPEHNILNLLEESGI
Sbjct: 121 PSISAPEHNILNLLEESGI 138

[Close]

BLAST of Cp4.1LG08g08840 vs. TrEMBL
Match: A5BYJ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022546 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43
Identity = 100/148 (67.57%), Postives = 112/148 (75.68%), Query Frame = 1


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPSIPESTGVSDTTAAAAS---HGIEVAVEFKP 60
           MVGIFSRFS SR  HRR QSALD RE LPS  E TG ++  A AA+   HGIEVAVEFKP
Sbjct: 1   MVGIFSRFSVSRAAHRRTQSALDEREVLPSNSEVTGAANAVAVAAAVAPHGIEVAVEFKP 60

Query: 61  VEHPIEPLDNDRPIQCPLPEPSILNDGRIWKERVS-SLRRMPDMPVMKEPEICETRS--- 120
           VEHP EPLDNDRP+QCPLPEPSILNDGRIWKERVS S+RR  D+ VMKE    E+ +   
Sbjct: 61  VEHPTEPLDNDRPVQCPLPEPSILNDGRIWKERVSASVRRRSDLSVMKEGNFLESEAAGK 120

Query: 121 -----RATRTILPSMSAPEHNILNLLEE 137
                ++ R ILPS+SAPEHN+LNLLEE
Sbjct: 121 PPRPPQSNRLILPSLSAPEHNLLNLLEE 148

[Close]

BLAST of Cp4.1LG08g08840 vs. TrEMBL
Match: A0A059CJ80_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02636 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43
Identity = 101/146 (69.18%), Postives = 111/146 (76.03%), Query Frame = 1


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPSIPESTGVSDTTAAAASHGIEVAVEFKPVEH 60
           MVG+FS+FS  R GHRRAQSALDGRE  P   E    + T AAAASHGIEVAVEFKPVEH
Sbjct: 1   MVGLFSKFSVHRGGHRRAQSALDGREVGPPNAEDASAA-TAAAAASHGIEVAVEFKPVEH 60

Query: 61  PIEPLDNDRPIQCPLPEPSILNDGRIWKERVS-SLRRMPDMPVMKEPEICETRSRA---- 120
           PIEPLDND+PIQCPLPEPSILNDGRIWKERVS ++RR  D+P+MKE    E+ S A    
Sbjct: 61  PIEPLDNDQPIQCPLPEPSILNDGRIWKERVSATVRRRVDLPIMKESGSIESESTAGSRQ 120

Query: 121 -----TRTILPSMSAPEHNILNLLEE 137
                 R ILPSMSAPEHN+L LLEE
Sbjct: 121 RPATINRMILPSMSAPEHNLLKLLEE 145

[Close]

BLAST of Cp4.1LG08g08840 vs. TrEMBL
Match: D7TTN1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g02670 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-43
Identity = 100/148 (67.57%), Postives = 112/148 (75.68%), Query Frame = 1


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPSIPESTGVSDTTAAAAS---HGIEVAVEFKP 60
           MVGIFSRFS SR  HRR QSALD RE LPS  E TG ++  A AA+   HGIEVAVEFKP
Sbjct: 1   MVGIFSRFSVSRAAHRRTQSALDERELLPSNSEVTGAANAVAVAAAVAPHGIEVAVEFKP 60

Query: 61  VEHPIEPLDNDRPIQCPLPEPSILNDGRIWKERVS-SLRRMPDMPVMKEPEICETRS--- 120
           VEHP EPLDNDRP+QCPLPEPSILNDGRIWKERVS S+RR  D+ VMKE    E+ +   
Sbjct: 61  VEHPTEPLDNDRPVQCPLPEPSILNDGRIWKERVSASVRRRSDLSVMKEGNFLESEAAGK 120

Query: 121 -----RATRTILPSMSAPEHNILNLLEE 137
                ++ R ILPS+SAPEHN+LNLLEE
Sbjct: 121 PPRPPQSNRLILPSLSAPEHNLLNLLEE 148

[Close]

BLAST of Cp4.1LG08g08840 vs. TrEMBL
Match: W9SD56_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022798 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.0e-43
Identity = 108/164 (65.85%), Postives = 118/164 (71.95%), Query Frame = 1


Query: 1   MVGIFSRFSSSRTGHRRAQSAL----------------DGREGLPSIPESTGVSDTTAAA 60
           MVGIFSRFS SRTGHRR+QSAL                D RE LP  P S   S   AAA
Sbjct: 1   MVGIFSRFSVSRTGHRRSQSALGKAETAKTEQTAGLVRDEREVLP--PNSEITSANAAAA 60

Query: 61  ASHGIEVAVEFKPVEHPIEPLDNDRPIQCPLPEPSILNDGRIWKERVS-SLRRMPDMPVM 120
           +SHGIEVAVEFKPVEHP EPLDNDRPIQCPLPEPSILNDGRIWKERVS ++RR  D+PVM
Sbjct: 61  SSHGIEVAVEFKPVEHPNEPLDNDRPIQCPLPEPSILNDGRIWKERVSATVRRRADLPVM 120

Query: 121 K------EPEICETR-----SRATRTILPSMSAPEHNILNLLEE 137
           K      EPE  ET+     ++A R+ILPS+SAPEHNILNLLEE
Sbjct: 121 KEGAASLEPESAETKPKPAQTQANRSILPSLSAPEHNILNLLEE 162

[Close]

BLAST of Cp4.1LG08g08840 vs. TAIR10
Match: AT1G31940.1 (AT1G31940.1 unknown protein)

HSP 1 Score: 170.6 bits (431), Expect = 6.7e-43
Identity = 90/146 (61.64%), Postives = 106/146 (72.60%), Query Frame = 1


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPSIPESTGVSDTTAAAASHGIEVAVEFKPVEH 60
           MVGIFSRFS  R+ HRR QSA+D +E L    +    + TTA  A+HGIEVA EFKPVEH
Sbjct: 1   MVGIFSRFSVGRSTHRRTQSAIDDKEVLAPNSDVIAATTTTATTATHGIEVATEFKPVEH 60

Query: 61  PIEPLDNDRPIQCPLPEPSILNDGRIWKERVS-SLRRMPDMPVMKEPEICETRSRA---- 120
           P+EPLDND PIQCPLPEPSILNDGRIWKERVS S+RR  D+ ++K+    E+   A    
Sbjct: 61  PVEPLDNDLPIQCPLPEPSILNDGRIWKERVSASMRRKGDLQIVKDEAASESDGSAPKPP 120

Query: 121 -----TRTILPSMSAPEHNILNLLEE 137
                 R+ILPS+SAPEHN+LNLLEE
Sbjct: 121 RPPQPNRSILPSLSAPEHNLLNLLEE 146

[Close]

BLAST of Cp4.1LG08g08840 vs. TAIR10
Match: AT2G35585.1 (AT2G35585.1 unknown protein)

HSP 1 Score: 157.1 bits (396), Expect = 7.6e-39
Identity = 86/150 (57.33%), Postives = 106/150 (70.67%), Query Frame = 1


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPSIPESTGVSDTTAAAASHGIEVAVEFKPVEH 60
           MVGIFSRFS  R  HRR QSA+DGRE L    +    ++TT    +HGIEVA EFKPV+H
Sbjct: 1   MVGIFSRFSVVRGSHRRTQSAIDGREVLSPRSDLAPATNTT-TTETHGIEVATEFKPVDH 60

Query: 61  PIEPLDNDRPIQCPLPEPSILNDGRIWKERV--SSLRRMPDMPVM-----KEPEICET-- 120
           P+EPLDND+PIQCPLPEPSILNDGR+WKERV  SS+RR  D+ ++     +E ++  T  
Sbjct: 61  PMEPLDNDQPIQCPLPEPSILNDGRLWKERVSASSMRRRSDLAIVQDGMDEESDVSVTSI 120

Query: 121 -----RSRATRTILPSMSAPEHNILNLLEE 137
                +    R ILPS+SAPEH++LNLLEE
Sbjct: 121 PSRTSQCNTNRPILPSLSAPEHDLLNLLEE 149

[Close]

BLAST of Cp4.1LG08g08840 vs. NCBI nr
Match: gi|659095515|ref|XP_008448622.1| (PREDICTED: uncharacterized protein LOC103490741 isoform X2 [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 1.0e-61
Identity = 123/139 (88.49%), Postives = 131/139 (94.24%), Query Frame = 1


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPSIPESTGVSDTTAAAASHGIEVAVEFKPVEH 60
           MVGIFSRFSSSRTGHRRAQSALDGREGLP  PESTGVS  T+AAASHGIEVAVEFKPVEH
Sbjct: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVS-ATSAAASHGIEVAVEFKPVEH 60

Query: 61  PIEPLDNDRPIQCPLPEPSILNDGRIWKERVSSLRRMPDMPVMKEPEICETRSRATRTIL 120
           PIEPLDND+PIQCPLPEPSILNDGRIWKERVSS+R++PD+PVMKE E+ ETR R TRTIL
Sbjct: 61  PIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTIL 120

Query: 121 PSMSAPEHNILNLLEESGI 140
           PS+SAPEHNILNLLEESGI
Sbjct: 121 PSISAPEHNILNLLEESGI 138

[Close]

BLAST of Cp4.1LG08g08840 vs. NCBI nr
Match: gi|449456751|ref|XP_004146112.1| (PREDICTED: uncharacterized protein LOC101208810 [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 3.0e-61
Identity = 122/139 (87.77%), Postives = 130/139 (93.53%), Query Frame = 1


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPSIPESTGVSDTTAAAASHGIEVAVEFKPVEH 60
           MVGIFSRFSSSRTGHRRAQSALDGREGLP  PESTGVS  T+A ASHGIEVAVEFKPVEH
Sbjct: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVS-ATSATASHGIEVAVEFKPVEH 60

Query: 61  PIEPLDNDRPIQCPLPEPSILNDGRIWKERVSSLRRMPDMPVMKEPEICETRSRATRTIL 120
           PIEPLDND+PIQCPLPEPSILNDGRIWKERVSS+R++PD+PVMKE E+ ETR R TRTIL
Sbjct: 61  PIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTIL 120

Query: 121 PSMSAPEHNILNLLEESGI 140
           PS+SAPEHNILNLLEESGI
Sbjct: 121 PSISAPEHNILNLLEESGI 138

[Close]

BLAST of Cp4.1LG08g08840 vs. NCBI nr
Match: gi|659095513|ref|XP_008448621.1| (PREDICTED: uncharacterized protein LOC103490741 isoform X1 [Cucumis melo])

HSP 1 Score: 203.8 bits (517), Expect = 2.0e-49
Identity = 101/117 (86.32%), Postives = 109/117 (93.16%), Query Frame = 1


Query: 23  DGREGLPSIPESTGVSDTTAAAASHGIEVAVEFKPVEHPIEPLDNDRPIQCPLPEPSILN 82
           DGREGLP  PESTGVS  T+AAASHGIEVAVEFKPVEHPIEPLDND+PIQCPLPEPSILN
Sbjct: 29  DGREGLPPNPESTGVS-ATSAAASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILN 88

Query: 83  DGRIWKERVSSLRRMPDMPVMKEPEICETRSRATRTILPSMSAPEHNILNLLEESGI 140
           DGRIWKERVSS+R++PD+PVMKE E+ ETR R TRTILPS+SAPEHNILNLLEESGI
Sbjct: 89  DGRIWKERVSSMRKLPDLPVMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI 144

[Close]

BLAST of Cp4.1LG08g08840 vs. NCBI nr
Match: gi|729342911|ref|XP_010540733.1| (PREDICTED: uncharacterized protein LOC104814407 [Tarenaya hassleriana])

HSP 1 Score: 186.0 bits (471), Expect = 4.3e-44
Identity = 97/140 (69.29%), Postives = 109/140 (77.86%), Query Frame = 1


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPSIPESTGVSDTTAAAASHGIEVAVEFKPVEH 60
           MVGIFSRFS SR+GHRR+QS +D RE LP   +S     TT  A SHGIEVA EFKPVEH
Sbjct: 1   MVGIFSRFSVSRSGHRRSQSTVDEREVLPPASDSAATVSTTIPAVSHGIEVATEFKPVEH 60

Query: 61  PIEPLDNDRPIQCPLPEPSILNDGRIWKERVS-SLRRMPDMPVMKEPEICETRSRAT--- 120
           PIEPLDND+PIQCPLPEPSILNDGRIWKERVS S+RR  D+PV+K+    E+    T   
Sbjct: 61  PIEPLDNDQPIQCPLPEPSILNDGRIWKERVSASMRRRGDLPVVKDGSAVESGGSGTKPP 120

Query: 121 RTILPSMSAPEHNILNLLEE 137
           R ILPS+SAPEHN+LNLLEE
Sbjct: 121 RLILPSLSAPEHNLLNLLEE 140

[Close]

BLAST of Cp4.1LG08g08840 vs. NCBI nr
Match: gi|1009166328|ref|XP_015901534.1| (PREDICTED: uncharacterized protein LOC107434571 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 184.9 bits (468), Expect = 9.7e-44
Identity = 98/145 (67.59%), Postives = 116/145 (80.00%), Query Frame = 1


Query: 1   MVGIFSRFSSSRTGHRRAQSALDGREGLPSIPESTGVSDTTAAAASHGIEVAVEFKPVEH 60
           MVGIFSRFS++R+GHRR+QSA++ RE  P   E T  +   AAA+SHGIEVAVEFKPVEH
Sbjct: 1   MVGIFSRFSANRSGHRRSQSAINVREASPPNSEITSAAPAAAAASSHGIEVAVEFKPVEH 60

Query: 61  PIEPLDNDRPIQCPLPEPSILNDGRIWKERVS-SLRRMPDMPVMK-----EPEICETRSR 120
           P EPLDNDRP+QCPLPEPSILNDGRIWK+RVS ++RR  D+ VMK     EPE  E ++R
Sbjct: 61  PTEPLDNDRPVQCPLPEPSILNDGRIWKQRVSANVRRRSDLSVMKEGESLEPEGHEMKTR 120

Query: 121 ATRT---ILPSMSAPEHNILNLLEE 137
            T+T   ILPS+SAPEHN+LNLLEE
Sbjct: 121 PTQTNRMILPSLSAPEHNLLNLLEE 145

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g08840 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g08840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L159_CUCSA	2.1e-61	87.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006710 PE=4 SV=1	[more]
A5BYJ6_VITVI	1.2e-43	67.57	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022546 PE=4 SV=1	[more]
A0A059CJ80_EUCGR	1.2e-43	69.18	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02636 PE=4 SV=1	[more]
D7TTN1_VITVI	1.5e-43	67.57	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g02670 PE=4 SV=...	[more]
W9SD56_9ROSA	2.0e-43	65.85	Uncharacterized protein OS=Morus notabilis GN=L484_022798 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g08840 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31940.1	6.7e-43	61.64	unknown protein	[more]
AT2G35585.1	7.6e-39	57.33	unknown protein	[more]

BLAST of Cp4.1LG08g08840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095515\|ref\|XP_008448622.1\|	1.0e-61	88.49	PREDICTED: uncharacterized protein LOC103490741 isoform X2 [Cucumis melo]	[more]
gi\|449456751\|ref\|XP_004146112.1\|	3.0e-61	87.77	PREDICTED: uncharacterized protein LOC101208810 [Cucumis sativus]	[more]
gi\|659095513\|ref\|XP_008448621.1\|	2.0e-49	86.32	PREDICTED: uncharacterized protein LOC103490741 isoform X1 [Cucumis melo]	[more]
gi\|729342911\|ref\|XP_010540733.1\|	4.3e-44	69.29	PREDICTED: uncharacterized protein LOC104814407 [Tarenaya hassleriana]	[more]
gi\|1009166328\|ref\|XP_015901534.1\|	9.7e-44	67.59	PREDICTED: uncharacterized protein LOC107434571 isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g08840.1	Cp4.1LG08g08840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34196	FAMILY NOT NAMED	coord: 1..137 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g08840	Cucsa.322190	Cucumber (Gy14) v1	cgycpeB0854
Cp4.1LG08g08840	CmaCh16G011980	Cucurbita maxima (Rimu)	cmacpeB363
Cp4.1LG08g08840	CmaCh06G006160	Cucurbita maxima (Rimu)	cmacpeB852
Cp4.1LG08g08840	CmoCh06G006230	Cucurbita moschata (Rifu)	cmocpeB797
Cp4.1LG08g08840	CmoCh16G012450	Cucurbita moschata (Rifu)	cmocpeB327
Cp4.1LG08g08840	Cla008846	Watermelon (97103) v1	cpewmB829
Cp4.1LG08g08840	Csa3G006710	Cucumber (Chinese Long) v2	cpecuB863
Cp4.1LG08g08840	MELO3C013813	Melon (DHL92) v3.5.1	cpemeB808
Cp4.1LG08g08840	ClCG10G001200	Watermelon (Charleston Gray)	cpewcgB772
Cp4.1LG08g08840	CSPI03G01220	Wild cucumber (PI 183967)	cpecpiB865
Cp4.1LG08g08840	Lsi07G011530	Bottle gourd (USVL1VR-Ls)	cpelsiB725
Cp4.1LG08g08840	MELO3C013813.2	Melon (DHL92) v3.6.1	cpemedB952
Cp4.1LG08g08840	CsaV3_3G001240	Cucumber (Chinese Long) v3	cpecucB1059
Cp4.1LG08g08840	Bhi07G000832	Wax gourd	cpewgoB1134
Cp4.1LG08g08840	CsGy3G001130	Cucumber (Gy14) v2	cgybcpeB456
Cp4.1LG08g08840	Carg23581	Silver-seed gourd	carcpeB1463
Cp4.1LG08g08840	Carg23414	Silver-seed gourd	carcpeB1337

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG08g08840	Cp4.1LG14g09950	Cucurbita pepo (Zucchini)	cpecpeB249

The following block(s) are covering this gene:

None