CsGy2G005600 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G005600
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionCytochrome c oxidase subunit
LocationChr2 : 3890505 .. 3895958 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTGTTTAAAAATTTAATACAATTATAGTTTTAATTAAATTTAATTGTGAATTAACGGGCTGTCTTGATGGGCCGAAGAAGGCCCATATAGAACGGCCCACTTATATATGATTTCATTGGACAAAAATCCAACATCTTCTTCGTTCAACTTAAACTGCGCCTTCCTCTACGTTGCATTACAGAGTCTTCCATTTGATCTCCAAAATTTCTAGGACCTTCAATCCGATCAGTCATGGACGAGGTAAGCCTTGTTCTGCTCTCTTTCCCTGTTTATTTGCTAGAAAAATCAATGCTATTGTATCGATTTTTCATTTCTTCTTTTGATGTTCTGAATTTTTCCATTCATTAACGGCCTCGATTTGGATGCCAATCATTTTCTGTATAGAAGTATGATGCTTTCGTCAAATCAGCTTCATTGGTCGAAATCTCCGACGTAATCGTATGTTTGAGATTTCATTAGAGTTTTGAAGATGGATTACCTAATGGTAGGATTGAGATTTCGTTTGATTTCATTAGGATTTAAATTCTTTGAAAGCTTGGTGGGTATCTTGCTCGGAGTCTTCAAGCTTTTATTTGTTACCTTTTCTTTCATTTTGGACGGGATAGGACGCTGGAAGCTGCAAAACTGTTAGGAAGAAAATGACTTATTTTATTTTATTTAAACGAGAAGTTGTGGTTATGAAAGAAAATGGAGAAGAAGAAGGACTTTTATGTTGATGTCGCTGATAAAACTTGTGATTTAAAGTTTAGGAAGGAATTCTTGTTTGCAATTGAAAATCTGCAAACTCTCCTTTTAGATTGGCCCGTCGCTACCAAATTTGATACTCGCATCATGAATACTGCTCTTATGAGCAAAGAACTGAACGCACTAAATCTCACTACAGTGTCTTCTTAGAAGAACATCCCAAACATATATTGGATTAGGCAACGAGGATTCTGAATTGAAAGGCAACTTAACTATTATGTTTGTAGAATAAGGGTTTAAAAAGAGAAAATGCAGCACCATGTATCCTGTCAAATATAAATTATTTGGCAGTTGTCAAATAAACTTCACACAAGGGGAGAATGAATTGATCATTTGAGAAATATAATTGTAGAAGACAAGACATGTTCACATGGGAAGGATGGATCTTTTATCAAATTCACATCCGAGAAGGATGGTAAATAGAAATCCCAAGAAGCAATAATAGAAGGAAGATAAGAACATCAAACTGCATCAATTTAGAATGATTTTGCACATGAAATTAATGTTTATGTTAAAAAAAATCTGTTTTGCATGTATATATCATGTTTACCCATGCTTCATACATGACAATGTGTACATCTAGATAATGTTTTCTTATTGTTGTCAATAACTGAATGTTGTAACCTAGGTGAGTCAGTTCGTGTTCTGTTGTTTGCCATGAGTTGAGGTATGGTATAGAAGGCACAAGGTACTTGGTTGTTGGTACCAATGTTGAAATGTGCCGGTTGTTATTTTGGAAGAATGTTATTGGGAAAACGTAACTACCCATATCAGATAGAATAAAAATTTAAGGATGTGTATTAAATGAGTATCTATAGATGAGTGGTGATCGTTCATCAAGATGATACCCTTCAGTCTTCAGTCTTCAATGTCTTTTTCCATCATTATTTTTATTTGTTCCTTTTCTTCTTGTTTGTCACCTCAGATTGAGCTGAAAACAGCACCTGCTGACTTCCGATTCCCTACTACAAATCAAACTAGGCACTGTTTCACTCGTTACATCGAGTTCCACAGGTGCATTTTCTCATATAACTTAGAATGAGAGTTAAAGTGGAAAAACGGAAATGGTCTGCAGCCTTCTCTGTTTCGTAGTTTACTTTCCCCTTATATATGCGAAACCTTCCACAGGTGCCTGACAGTAAAGGGTGAGGAGTCTGGTGAATGTGAAAGATTTGCAAAGTACTATCGTGCTCTTTGCCCTGGTGAATGGGTGAGTTCTTTGTTGCATTTGGTGTTGTTAAAAGCATATTAAAATTTTCTTATCCTATTTTTACTGCTCATGTTGATGCAGTTCTGGATCTTAGGTGCATAGCCACAATAACTCTTTGCCTTTTTCCGATATTAGTATTACTCAAGTTTTTTGTGCATACACTCTAGATTGAATTCTAAGTTCCAATTGTAACATGTTCTCTATGAACCTAGGAAATCTTCTTTTGATATCTTGGTGTCCAGCATTACAAGCTATTTGTGCCTTGAAAGCTTTTACAAGTATATGATATAGTTCCAATTATGGTTTATCTTGACCTTCAAATCTTTTGTATTCTTTTGATAAAGCGATATTAGCTAATTACAGACTCGGGTTTGATATACTTCCTCACATGTTGGGCATAAGATTTATTCTGGTTAATCAGTCTTGAGTTATTAACTTTTAGTCTTCAAACTGAGAGAACTTAATGTAGGGATAAAAAATTGTCATAAGCTAATATTGTCTCAGAATTAATGAAATCATTATATATATTGTGCAGTTATAAAACTTGTGGAATTTTTAGTTGATAGTCCTGTTTGCATTATATTGTATAGAAAGGTTAAACGAATAAAACAACTCACATAATATTATTTAAACCTTTATAGACAGGAGCACTCATAAGCTCCCTTGTAAAAAAGAAAAAAAAAAGGGTGTGGAGCTCTCTAGGTGACATTTCCTCTTCAAACACTCACGTGTAGTTGTGATCAATATGGGGACATTTTTACATAACGTTGTCAAATCTATAGCAAGAAATTCAGTTTGGATTCCAAGTTTTACTTTGAAGGAAGTTATGTCTTGCGGATGATTTTTTTTGCTGGGCGAGTTGAAGACCTGCAAATGTTTGGAAGACCATATGGTTAAGGGTTTGATGAACCATAAAGTTTAAGCGATGCGGATATGTCTTGGTTACAGATGATGAGAAATACCCAAGAAAAATATATTGAATTGTTATGGTTGGCAAAAAGTGGAAAAAGATTGTGCTTATTGTTCTGGTGAACGAATTAGAATTTGGGTGAGAATCAATTTGGATGAACTCTAATTTCTTGGAAAGTGTGACCGTTATATGGAAATTGGCGTATGATAGAAAATTTATTAGGGTAGAAGTTAGAAATACTTTTGGGTATTAAGGTAAATTAGTCCTCTTCTTAGCAACGGAGTGGGAGGTCATGGATATGGAAATATTTTTGGGTATTAAGGGTATATTAGTCCTCTTAGTAACGGAGCTGGTTTAGGCTTGAAGGAGGTGAGCTCAAAGATGGGATGGTCTCAATACCTTCAATTATTTGGGAATTAGAAGTTAATTTAATTGACCATCAATTAATTGGGAATTAGGAGTCAATTGTAATTGTTTTATTTATATCTTTCGTTGTCATTTCAGCTCCTAGGTTCTTGCAGGTAGGCACTGATATGTGAACTTTAGTAGAAATTGAAAGATTAAAATTAAAAATTTTACGAAGTATAGGGACCCCAATTTTACAAAATGGATAGATTAGATATTTAGGAACCAAAACTCCATTTGAACCTATGAGTTCTGTGAATGATTGGTTAAAATACCATTTTGGGCCCTATACTTGAAGTTTGTTCAATTGTCCCTGCACATTCAATAAATTTGAAATTTAGTCCATGTAAGTTAATTTTTACCCAATTTGGTTAAATAATGATAATAATTTTCATGTGAAGAAATACAATATGTAAGTGTCTTCAAAATTTATAATAAAAATGCTAATATCTTAACAAAGTATTTTTAAAATTTCAGCAATGAACTAGCCGTAAGACTAAATTTAAAGACTTATTGAAACTAAAAAGGACTAGAATTGGACAATTGAAAATACATGGACTAAGATTGAACTTGGACGAAGATGGTCTTTTAACCAATTAATAGATGATCCTGTCATTAAGAACTAGAGTCATGTGTATTTGCAAATCAAATATGCTGATTACATTAGGACCATCCAACTTCCTTGGATAGGGTCATATTTTTTGTTACAGATGCTACACACTTGAATGCTTACTCCATAATTCTATGGGTTGTTGAGTCTATCGGCCATGATTACTCTACAAGAAATGTGATTATATCGCATATGTAATTCTTTTAACATTTTATTTTACCGCCATGCTAAATATTAATTTATACATTTAATCCAGAAAAGTGGAAAATCTGTCATGAACGTCTGCTTGTTGATATGCTTAATCTTAGGGGATAGTCCTGCTGGAAACAGGATGAAAGTGAAACCTATTCAACAAGTTTATTTCATATGTTACATGCATGTTAATAACTGCATCTTTTCCGCAGGTCGACAAATGGAATGAGCAGAGGGAGAACGGTACTTTCCCTGGTCCTCTCTGAACTTGTTCATCACCGGGAAAGCACAGATTGTTAATTTATGTTTGTTCTCAAGTTTTATCAAAAAACTGTTTGGGAGTTCCATTATTTTTCATTGCCATCTTCTCAGAGAATAATAAAGGATAGCCATTTTGTTTCGTGTCTTCTTGAGTAGTTATAACTCAATTGTTGATTGTGGATACGCTGAATGGATCCCAAAATGCACCTTACCATTTCTCTACCCTTTCTTGTCCATTCGACTCCCGTTTGATTTGTTTTCAATCTTCTGTGTAATTAGATCTTTAAACCAACTTAATTTGCTCCATTTGTTGTTGACTTCTAAAGAAAGTTTCTTGTAATTTTAGTATATAACAGATGAAAGCAACGATGGATGGGCTCCAAACTGGATGGCCTAAGAGACATGCGAAGCTGAAATGTTATGGATCGCAAGTTGGTAATAATTTTTATTGATTTAGAAAATGAAATTTATATTTAAAAAAAAAAAAAATTATTGATTTATTGAGTGCATATCTCATTGGTAGGATCACTTATTTGATCAAATCCTCAGCTTTGCATAAACTAGGTCTATGCTTGCTTGCTGTTGATTGTAAATATAGAAAATGGGTGTAGATAGACTTGAGGCAAATGATTTGGCTCTACAAAGATGCTATCTGTAACTTAATATTCCTGCCTTGAAAACAAGGGTTGCTATGAGAACTCCCATGTTGGTTGGGATTTGGAATGGACTGAAAATTTTCTACTATGAAATTATAGAGACAAATTTGTAAGGTACAAGGACTAAAATATTGTCTGAATATATTGAGATTGACCAGCATATCATGCGGATTACTAGCTGGATTTGGGTTTTGGAGTATGGGTCTGACTCAAATCTTGGGAAGATTTTACACAATTTTGATTTCATCATGGTGGGTGGGTCATAGGGGCTTTAGATTTTGATGGGATAATTACATTGGGTAGCTGGATTGGAGTTTTTGAGTACGGGTCTCACTCAAATCAAATCTTGGGTTGTGTTGAAGGAAGTATTTGAATGATTTAGATTTAGATTTCATGGTGGGTCACAGGGCCTTAAGATTTTGATGGGATTTTGTTTTTGTTTTTCATTTAAAGTCGGGAGTTAG

mRNA sequence

GCTTGTTTAAAAATTTAATACAATTATAGTTTTAATTAAATTTAATTGTGAATTAACGGGCTGTCTTGATGGGCCGAAGAAGGCCCATATAGAACGGCCCACTTATATATGATTTCATTGGACAAAAATCCAACATCTTCTTCGTTCAACTTAAACTGCGCCTTCCTCTACGTTGCATTACAGAGTCTTCCATTTGATCTCCAAAATTTCTAGGACCTTCAATCCGATCAGTCATGGACGAGATTGAGCTGAAAACAGCACCTGCTGACTTCCGATTCCCTACTACAAATCAAACTAGGCACTGTTTCACTCGTTACATCGAGTTCCACAGGTGCCTGACAGTAAAGGGTGAGGAGTCTGGTGAATGTGAAAGATTTGCAAAGTACTATCGTGCTCTTTGCCCTGGTGAATGGGTCGACAAATGGAATGAGCAGAGGGAGAACGTCGGGAGTTAG

Coding sequence (CDS)

ATGGACGAGATTGAGCTGAAAACAGCACCTGCTGACTTCCGATTCCCTACTACAAATCAAACTAGGCACTGTTTCACTCGTTACATCGAGTTCCACAGGTGCCTGACAGTAAAGGGTGAGGAGTCTGGTGAATGTGAAAGATTTGCAAAGTACTATCGTGCTCTTTGCCCTGGTGAATGGGTCGACAAATGGAATGAGCAGAGGGAGAACGTCGGGAGTTAG

Protein sequence

MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEWVDKWNEQRENVGS
Homology
[Close]
BLAST of CsGy2G005600 vs. NCBI nr
Match: XP_004144709.1 (PREDICTED: cytochrome c oxidase subunit 6b-2 [Cucumis sativus] >KGN61078.1 hypothetical protein Csa_2G037250 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 5.8e-36
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW 60
          MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW
Sbjct: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW 60

Query: 61 VDKWNEQREN 71
          VDKWNEQREN
Sbjct: 61 VDKWNEQREN 70

[Close]
BLAST of CsGy2G005600 vs. NCBI nr
Match: XP_008452371.1 (PREDICTED: cytochrome c oxidase subunit 6b-2 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.7e-35
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW 60
          MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLT KGEESGECERFAKYYRALCPGEW
Sbjct: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60

Query: 61 VDKWNEQREN 71
          VDKWNEQREN
Sbjct: 61 VDKWNEQREN 70

[Close]
BLAST of CsGy2G005600 vs. NCBI nr
Match: XP_022929560.1 (cytochrome c oxidase subunit 6b-2 [Cucurbita moschata] >XP_023536781.1 cytochrome c oxidase subunit 6b-2 [Cucurbita pepo subsp. pepo] >XP_023547233.1 cytochrome c oxidase subunit 6b-2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.9 bits (385), Expect = 4.2e-34
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW 60
          M EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLT KGEESGECERFAKYYRALCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60

Query: 61 VDKWNEQREN 71
          V+KWNEQREN
Sbjct: 61 VEKWNEQREN 70

[Close]
BLAST of CsGy2G005600 vs. NCBI nr
Match: XP_022997477.1 (cytochrome c oxidase subunit 6b-2 [Cucurbita maxima])

HSP 1 Score: 151.8 bits (382), Expect = 9.3e-34
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW 60
          M EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLT KGEESGECERFAKYYRALCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60

Query: 61 VDKWNEQREN 71
          V++WNEQREN
Sbjct: 61 VERWNEQREN 70

[Close]
BLAST of CsGy2G005600 vs. NCBI nr
Match: XP_022969669.1 (cytochrome c oxidase subunit 6b-2-like [Cucurbita maxima])

HSP 1 Score: 151.8 bits (382), Expect = 9.3e-34
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW 60
          M EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLT KGEESGECERFAKYYRALCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60

Query: 61 VDKWNEQREN 71
          V+KWN+QREN
Sbjct: 61 VEKWNDQREN 70

[Close]
BLAST of CsGy2G005600 vs. TAIR10
Match: AT5G57815.1 (Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 147.9 bits (372), Expect = 2.4e-36
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0 

Query: 2  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEWV 61
          DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC T KGEES +CERFAKYYRALCPGEWV
Sbjct: 3  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWV 62

Query: 62 DKWNEQREN 71
          DKWNEQRE+
Sbjct: 63 DKWNEQRES 71

[Close]
BLAST of CsGy2G005600 vs. TAIR10
Match: AT4G28060.1 (Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 146.4 bits (368), Expect = 7.1e-36
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0 

Query: 2  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEWV 61
          DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC T KGE++ ECERFAKYYRALCPGEWV
Sbjct: 3  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWV 62

Query: 62 DKWNEQRE 70
          DKWNEQRE
Sbjct: 63 DKWNEQRE 70

[Close]
BLAST of CsGy2G005600 vs. TAIR10
Match: AT1G22450.1 (cytochrome C oxidase 6B)

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-31
Identity = 52/69 (75.36%), Postives = 65/69 (94.20%), Query Frame = 0 

Query: 2   DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEWV 61
           DEI+L+TAPADFRFPTTNQTRHCFTRY+E+HRC+  KG+++ EC++FAK+YR+LCP EWV
Sbjct: 115 DEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWV 174

Query: 62  DKWNEQREN 71
           D+WNEQREN
Sbjct: 175 DRWNEQREN 183

[Close]
BLAST of CsGy2G005600 vs. TAIR10
Match: AT1G32710.1 (Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-11
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0 

Query: 9   APADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEWVDK-WNEQ 68
           A  + RFP TN+TRHCF R++++H+C+   G ++ +C     Y R++CP E V K W + 
Sbjct: 59  AAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSKIWLKS 118

Query: 69  REN 71
             N
Sbjct: 119 GRN 121

[Close]
BLAST of CsGy2G005600 vs. Swiss-Prot
Match: sp|Q945L0|CX6B2_ARATH (Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.4e-35
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0 

Query: 2  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEWV 61
          DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC T KGEES +CERFAKYYRALCPGEWV
Sbjct: 3  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWV 62

Query: 62 DKWNEQREN 71
          DKWNEQRE+
Sbjct: 63 DKWNEQRES 71

[Close]
BLAST of CsGy2G005600 vs. Swiss-Prot
Match: sp|Q9SUD3|CX6B3_ARATH (Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=2 SV=2)

HSP 1 Score: 146.4 bits (368), Expect = 1.3e-34
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0 

Query: 2  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEWV 61
          DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC T KGE++ ECERFAKYYRALCPGEWV
Sbjct: 3  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWV 62

Query: 62 DKWNEQRE 70
          DKWNEQRE
Sbjct: 63 DKWNEQRE 70

[Close]
BLAST of CsGy2G005600 vs. Swiss-Prot
Match: sp|Q9S7L9|CX6B1_ARATH (Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-30
Identity = 52/69 (75.36%), Postives = 65/69 (94.20%), Query Frame = 0 

Query: 2   DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEWV 61
           DEI+L+TAPADFRFPTTNQTRHCFTRY+E+HRC+  KG+++ EC++FAK+YR+LCP EWV
Sbjct: 115 DEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWV 174

Query: 62  DKWNEQREN 71
           D+WNEQREN
Sbjct: 175 DRWNEQREN 183

[Close]
BLAST of CsGy2G005600 vs. Swiss-Prot
Match: sp|O94581|COX12_SCHPO (Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cox12 PE=3 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 2.7e-16
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 0 

Query: 8  TAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEWVDKWNEQ 67
          T   D RFP TNQT+HCF  YI++ RC+  KGE+   C++F   Y++LCP EWV++W+EQ
Sbjct: 17 TVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQ 76

Query: 68 REN 71
          REN
Sbjct: 77 REN 79

[Close]
BLAST of CsGy2G005600 vs. Swiss-Prot
Match: sp|Q01519|COX12_YEAST (Cytochrome c oxidase subunit 6B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=COX12 PE=1 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-15
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 0 

Query: 6  LKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEWVDKWN 65
          L T   D RFP  NQT+HC+  Y+++H+C+ +KGE+   C+ F K Y ALCP +W++KW+
Sbjct: 9  LHTVGFDARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWIEKWD 68

Query: 66 EQRE 70
          +QRE
Sbjct: 69 DQRE 72

[Close]
BLAST of CsGy2G005600 vs. TrEMBL
Match: tr|A0A0A0LH49|A0A0A0LH49_CUCSA (Cytochrome c oxidase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G037250 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.8e-36
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW 60
          MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW
Sbjct: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW 60

Query: 61 VDKWNEQREN 71
          VDKWNEQREN
Sbjct: 61 VDKWNEQREN 70

[Close]
BLAST of CsGy2G005600 vs. TrEMBL
Match: tr|A0A1S3BUT2|A0A1S3BUT2_CUCME (Cytochrome c oxidase subunit OS=Cucumis melo OX=3656 GN=LOC103493433 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW 60
          MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLT KGEESGECERFAKYYRALCPGEW
Sbjct: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60

Query: 61 VDKWNEQREN 71
          VDKWNEQREN
Sbjct: 61 VDKWNEQREN 70

[Close]
BLAST of CsGy2G005600 vs. TrEMBL
Match: tr|A0A218XXT3|A0A218XXT3_PUNGR (Cytochrome c oxidase subunit OS=Punica granatum OX=22663 GN=CDL15_Pgr012592 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.0e-33
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 2  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEWV 61
          DEI+LKTAPADFRFPTTNQTRHCFTRYIEFHRCLT KGEESGECE+FA+YYR+LCPGEWV
Sbjct: 3  DEIDLKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECEKFARYYRSLCPGEWV 62

Query: 62 DKWNEQREN 71
          +KWNEQREN
Sbjct: 63 EKWNEQREN 71

[Close]
BLAST of CsGy2G005600 vs. TrEMBL
Match: tr|I3SE54|I3SE54_LOTJA (Cytochrome c oxidase subunit OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 5.2e-33
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0 

Query: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW 60
          M EIELKTAP DFRFPTTNQTRHCFTRYIEFHRCL VKGEESGECERFAKYYR+LCPGEW
Sbjct: 1  MAEIELKTAPVDFRFPTTNQTRHCFTRYIEFHRCLAVKGEESGECERFAKYYRSLCPGEW 60

Query: 61 VDKWNEQREN 71
          V+KWNEQR+N
Sbjct: 61 VEKWNEQRDN 70

[Close]
BLAST of CsGy2G005600 vs. TrEMBL
Match: tr|A0A178UHL9|A0A178UHL9_ARATH (Cytochrome c oxidase subunit OS=Arabidopsis thaliana OX=3702 GN=AXX17_At5g57100 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 8.9e-33
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0 

Query: 2  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEWV 61
          DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC T KGEES +CERFAKYYRALCPGEWV
Sbjct: 3  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWV 62

Query: 62 DKWNEQREN 71
          DKWNEQRE+
Sbjct: 63 DKWNEQRES 71

The following BLAST results are available for this feature:
BLAST of CsGy2G005600 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144709.15.8e-36100.00PREDICTED: cytochrome c oxidase subunit 6b-2 [Cucumis sativus] >KGN61078.1 hypot... [more]
XP_008452371.11.7e-3598.57PREDICTED: cytochrome c oxidase subunit 6b-2 [Cucumis melo][more]
XP_022929560.14.2e-3495.71cytochrome c oxidase subunit 6b-2 [Cucurbita moschata] >XP_023536781.1 cytochrom... [more]
XP_022997477.19.3e-3494.29cytochrome c oxidase subunit 6b-2 [Cucurbita maxima][more]
XP_022969669.19.3e-3494.29cytochrome c oxidase subunit 6b-2-like [Cucurbita maxima][more]
BLAST of CsGy2G005600 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G57815.12.4e-3692.75Cytochrome c oxidase, subunit Vib family protein[more]
AT4G28060.17.1e-3692.65Cytochrome c oxidase, subunit Vib family protein[more]
AT1G22450.11.1e-3175.36cytochrome C oxidase 6B[more]
AT1G32710.11.2e-1139.68Cytochrome c oxidase, subunit Vib family protein[more]
BLAST of CsGy2G005600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q945L0|CX6B2_ARATH4.4e-3592.75Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=... [more]
sp|Q9SUD3|CX6B3_ARATH1.3e-3492.65Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=... [more]
sp|Q9S7L9|CX6B1_ARATH1.9e-3075.36Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=... [more]
sp|O94581|COX12_SCHPO2.7e-1653.97Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe (strain 972 / ATCC ... [more]
sp|Q01519|COX12_YEAST1.7e-1548.44Cytochrome c oxidase subunit 6B OS=Saccharomyces cerevisiae (strain ATCC 204508 ... [more]
BLAST of CsGy2G005600 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LH49|A0A0A0LH49_CUCSA3.8e-36100.00Cytochrome c oxidase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G037250 PE=3 SV=... [more]
tr|A0A1S3BUT2|A0A1S3BUT2_CUCME1.1e-3598.57Cytochrome c oxidase subunit OS=Cucumis melo OX=3656 GN=LOC103493433 PE=3 SV=1[more]
tr|A0A218XXT3|A0A218XXT3_PUNGR4.0e-3391.30Cytochrome c oxidase subunit OS=Punica granatum OX=22663 GN=CDL15_Pgr012592 PE=3... [more]
tr|I3SE54|I3SE54_LOTJA5.2e-3391.43Cytochrome c oxidase subunit OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
tr|A0A178UHL9|A0A178UHL9_ARATH8.9e-3392.75Cytochrome c oxidase subunit OS=Arabidopsis thaliana OX=3702 GN=AXX17_At5g57100 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR036549Cyt_c_oxidase_su6B_sf
IPR003213Cyt_c_oxidase_su6B
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G005600.1CsGy2G005600.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003213Cytochrome c oxidase, subunit VIbPFAMPF02297COX6Bcoord: 14..68
e-value: 5.3E-17
score: 61.7
IPR003213Cytochrome c oxidase, subunit VIbPANTHERPTHR11387CYTOCHROME C OXIDASE POLYPEPTIDE VIBcoord: 3..70
IPR003213Cytochrome c oxidase, subunit VIbCDDcd00926Cyt_c_Oxidase_VIbcoord: 2..70
e-value: 1.30989E-30
score: 103.157
IPR036549Cytochrome c oxidase, subunit VIb superfamilyGENE3DG3DSA:1.10.10.140coord: 2..72
e-value: 5.1E-31
score: 108.9
IPR036549Cytochrome c oxidase, subunit VIb superfamilySUPERFAMILYSSF47694Cytochrome c oxidase subunit hcoord: 4..70
NoneNo IPR availablePANTHERPTHR11387:SF30SUBFAMILY NOT NAMEDcoord: 3..70
NoneNo IPR availablePRODOMPD015172coord: 10..70
e-value: 1.0E-28
score: 308.0
NoneNo IPR availablePROSITEPS51808CHCHcoord: 21..64
score: 12.93

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G005600Cla022868Watermelon (97103) v1cgybwmB155
CsGy2G005600Csa2G037250Cucumber (Chinese Long) v2cgybcuB056
CsGy2G005600MELO3C004105Melon (DHL92) v3.5.1cgybmeB120
CsGy2G005600ClCG11G012640Watermelon (Charleston Gray)cgybwcgB102
CsGy2G005600CSPI02G05470Wild cucumber (PI 183967)cgybcpiB056
CsGy2G005600CmaCh12G008300Cucurbita maxima (Rimu)cgybcmaB181
CsGy2G005600CmaCh05G006580Cucurbita maxima (Rimu)cgybcmaB252
CsGy2G005600CmoCh12G008340Cucurbita moschata (Rifu)cgybcmoB172
CsGy2G005600CmoCh05G006900Cucurbita moschata (Rifu)cgybcmoB240
CsGy2G005600Lsi11G007130Bottle gourd (USVL1VR-Ls)cgyblsiB089
CsGy2G005600Cp4.1LG07g06880Cucurbita pepo (Zucchini)cgybcpeB274
CsGy2G005600Cp4.1LG11g05870Cucurbita pepo (Zucchini)cgybcpeB164
CsGy2G005600MELO3C004105.2Melon (DHL92) v3.6.1cgybmedB118
CsGy2G005600CsaV3_2G007830Cucumber (Chinese Long) v3cgybcucB064
CsGy2G005600Cla97C11G218510Watermelon (97103) v2cgybwmbB104
CsGy2G005600Bhi06G001190Wax gourdcgybwgoB132
CsGy2G005600Carg08347Silver-seed gourdcarcgybB0061
CsGy2G005600Carg16409Silver-seed gourdcarcgybB0902
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G005600Cucumber (Gy14) v2cgybcgybB010
CsGy2G005600Cucurbita maxima (Rimu)cgybcmaB155
CsGy2G005600Cucurbita maxima (Rimu)cgybcmaB164
CsGy2G005600Cucurbita moschata (Rifu)cgybcmoB149
CsGy2G005600Cucurbita moschata (Rifu)cgybcmoB157
CsGy2G005600Cucurbita pepo (Zucchini)cgybcpeB206
CsGy2G005600Cucurbita pepo (Zucchini)cgybcpeB233
CsGy2G005600Cucumber (Chinese Long) v2cgybcuB052
CsGy2G005600Melon (DHL92) v3.5.1cgybmeB097
CsGy2G005600Melon (DHL92) v3.6.1cgybmedB094
CsGy2G005600Watermelon (Charleston Gray)cgybwcgB139
CsGy2G005600Watermelon (97103) v1cgybwmB160
CsGy2G005600Wild cucumber (PI 183967)cgybcpiB050
CsGy2G005600Silver-seed gourdcarcgybB0138
CsGy2G005600Silver-seed gourdcarcgybB0510
CsGy2G005600Cucumber (Chinese Long) v3cgybcucB058
CsGy2G005600Watermelon (97103) v2cgybwmbB138
CsGy2G005600Wax gourdcgybwgoB207