Carg16409 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16409
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cytochrome c oxidase subunit
Location	Cucurbita_argyrosperma_scaffold_130 : 262158 .. 267138 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCACGTTATTACAGAGTCTTCCGTTTGATCTCCATTTCTTGGAGCTTGAATCTGATCAGTCATGGCCGAGGTAAGCTTCGTTTCGCCTTCTTATGTGTTTAGTTTCAAGAAAAATCTATGGCAGTGAATCAATTTTTTCTTTTTTCTTTTTTCATTTCATATTCTGTATTTATCATTTCCTTTTCCCAATCATTAACGGCCTCGATTTGGGTGCAATAATCGTTTTCTGTATAAGGAGTATGTTTCTGTTAATGCTTGTTTTGTTCTCTGTTTTTTTTTTTTTGTTTAACTATTTTTTCGGTTTGGATTATACGCATAATCTGGATTAAGTTTAGAGGAATAGTGTTTCTGCTTTATTTCTTTTTCAATGCATTCTACAAACCAGCTTCACCGTTCATAATTTCCAACGTAGTTGTAGGATTGGAATTTCTTTAGAATTTAGATGAGGGATTATGTTCCGCGTGCGACGAGCCATGGAATTCTTCGACGCTTGTTGGATGTGTTGACCGGAGTCTTAACCTTCGATCTGTTACCTTTAGGTTAATTTTGGGCATAATAAGATGCTGGAAGCTGCAAAAATGTAAGGAAAATAATGGCTATTTTAATTTGAATGACAAACATTGGTTATGAAATGAATGAAACAACAGGAAAACAGAGGAGAGGAATGTTTTTTCTGTTTATGTCGCTGATAAAGTTGTGAATTGAAGTTTGAGAAGGAATTTTCTTGTTTACAAACGAAGAGACTAGAAAATCCCCTTTTTTGAATTTTCCCATCATTACCAAAATTAAGATTCACATCATGAATACTGACATATTCCGAGAAAATAAGGATTCTACTAAAATGTTTTTGATTGAAGATTATTGACATATTGTGAAAATATATATATATATATATATATATATATATATATTATATATATATATCTGAGGAGAAGAGATTCAACACTGTATATCGTGTCAAATACAAATTCTTTGACCCTTTCCTAAGTAAACTTCACACTATGGCATATAGAATTGATGCTTTCAGAAATATCTTTTTATTAGAATAGTAGAAGATAAGACATGGGAAGGACGAGACATCATCTCCATTCAAGAAGGATAGTAAACAGAACTCCCAATAAGCAGTAATAGATGAAAGATCAGAATCACATCAAACTGTGTCAATTTAGCATAATTTTATGCATGAAACAAATGTTTAGATTAAATTAAAAAAAAAAAAAAAAAATCCGTTTTTCATGTATATATTGTATCTATCCGTTCTTCATACTTGACATTGCGAACATATTGTAGATAATGTTTCTTACTGTTGTCAACAATTGAAGATTGTAACCTAGGGATGTCAGTTTGCATCTTGTTGTATGCCAGAGTTGGCGTGTAGGACACAAGATAATTAGTAAAATGTTGCAATGTTGGAAAAATGTTATCAGGAAAATGATTACAAACTACTCATATCTGACTGGATGAAACTTTAGTGATGTGTATCTTTTTGTCGCACTGGCAAACAGATATATTGAGTATTTATAAGGCAAGCGGTAATCCTTCAAGAAGATGATGCTCTTCAATGTCTATTCTATATTTTTATTAGTTCTATGTCTTCTTGTTTGTCGTCCCAGATTGAGCTGAAAACAGCACCTGCTGACTTCCGATTCCCTACTACAAATCAAACCAGGCACTGTTTCACTCGTTACATTGAGTTCCACAGGTGCATTTTTCTTACAACTTGAGATGAGAGTTAAAATGGAAAAATGAAAGGGTCTACAACGGTATAGTCTTCTCTGTTCTGATCGTTAGTTTTCCCCTTAAATGTGCAAAACTTTCTACAGGTGCCTGGCAGCAAAGGGTGAGGAATCTGGTGAATGTGAGAGATTTGCAAAGTATTATCGTGCCCTTTGCCCTGGTGAATGGGTGAGTTCTTTGTTGCACTTGGTGTTTTTAAAGTAATTAGAATTTGTCTGATCCTATTTTTCCTTCTCAAATTGATGTTGTTCTGCTAACATTTATGTGCATGGCCATAAGAACTCATTTTTTCCTTTTTTTCAATATTAGCATTGCTCAAGTTTGTTACGCTCTAGATTAGATTCTATGTTCCAATCAGAAAATATTCTCTGATCCAGGGGAAGTCTTCTTTTGATTTCTTTGCGCCCTGTGGCATCAGATTAAATGTTTATAATATAATCAGCTACTGAAGTTATTTTCGCTTTGAAATTCGTTTATCTTTTACATGCATATGATTTTTGATTCTATAATCTACAGTACATTTATGATTTATCTTTGCGCCCTGTGGCATCAGATTAAATGTTTATAATAATGTTTGAAATGTTATATTATTAACCAATTGTGAAGTTAGGATTGATATTTTTCCTCACGTATGAGGCATAAACTTTATTAACTATTAGTGTCTTGGGTATTAACTATTAGTCTTGAAATTGGGAGAATATTAAATGCAGGGACTAACAAAATATTATTTAAACCTTTATGAACAAGAGCACTCCTAAGAAGCTCCCTTGTGAAAAAGAAAATGGAGCTCTCTCTAGGTGACATTTCCTCTTCTGCACGCACGTGCAGTTTCTTATGTAACATAGGTTCTAGATGGTTGATCAGTATAATCACTATAGGAAAATGTTTACATCTACAGTGTGTGCTTGTAGGATCTAAAGTTAGAAATTCAGATTGGATTTCAAGTTGGACTTTAAAGGAAGTTTTGCCCAGAGGAAGTGGGAAGACATAAATTTGATTTTCTGCTAGGCGAGTTGAAAATCTTTGTGAGATCCCACATCGATTGGAGAGATGTGTCAGCGAGGACGCTAGGTTCCAAATGGGGGTGGATTGTAAGATCCCACATTGGTTGGAGAAGAGAACAAAACATTCTTTATGAGAGTGTGGAAATCTCTAGCAGACGCGTTTTAAAAACCTTGAGGGGAAACCCGAAAGGTAAAGTCTAAAAAGTACAATATCTGCTAGCGGTGGGTTTGTGGGCTTGGGCTGTTACAATCTTGGAATGGTTGGACGACTATATCATACTGCTGAAGTCCTAGAGCTATCATATTGCTGAGTGTCTGATGAGCCGTAAAGTTTATGTAGAAATTATGAAGGACATATCCATGTTGTGGTTACAGAAAGAGATAAATACCCAAGGAAAACATAATGAAATGTCATGATTGGCAAGACGTGGAAAAATGGGAATTTATGTGGAAATCTTTTGCTTGGATGAACTGTAATTTCTTAAAAACAGTATGAGAGTGAAAGGAACATTGGTGGTTGATAGAAATGTGATTAGGGTAGAAGTTAGAAATATTAGTAGGGTATTAAGAGTGTATTAGGCATCAGCATCGAACCTGGTTATAAATATAGGGAGTGAGAGGAGATGGAGATGGGCAATAGTTTAGTTGGTTCGGGCTTGAGTGGGTGAGCTCAAAGAGGGGATGGTCCAAATATCTTGAATTATTTGGGAGTTAATTGTAGTTCTTTTATCTTTTGTCTTTCAATATCATTTCAGTTCTTAGGTTTCTATCAGTTTAGGCACTAACATATATAAATTTTAGTGAAAGTTGAAAGATTAAACTTGAAATTTTAGAAGTCTAGGGACAACCATTAAAAAAAAAAAATAAAAGGGACAGATTAGATATTTAGGAACCATCCAAACTTTTGTAGATGGGGTTATACTTTTTGTCATAGGTGTCACGTTTCACAATCGCACTTTTCTTGGCAGTCGATTGTGCGGCACTCACTTCTCAACAGCAAATGAGTCAAACCAACCTATATTCGCGTTGCCTATGGCCAGACAACGTATTCTCAAGCCTCTCACCTTGATTTGAGAAGAGAAGGTTTTAGAAAACGGGGGCGGGGAGATTTTGAAAGAGAGTTTGAAAGCAAAATTGAGAGCAATGTTATATGGCATACAAGCAAAAGGCAACACAACAACATAAGTAGCATATAACTTTTTTGGGTAGGGAGAATTTGACAACTAGTTGCATCCCCCCCTATAGTACATTTTGAGGCGATTCAGGTGTGACAGACCTAGACGTGATTTTGCCAAATGGTCATACAAAATCAGGGGAGGAGTTAGACAACTAGTCACACCCTCGATAGGGCGATTCAGGGTCTAGCTGGTCTAGACATGATTTCGCCGAATGGTTATACAAAATCAGGGGAGGAGTTAGACAACTAGTCACACCCCCAATAGTGCGATTTAGGTCTAGCTGGCCTAGACATGATTTCGCCGAATGGTCATACAACCAAAAAAATATAATAGTAAGGCAATACAACATAAAATAAGTTAAAAGGGTTTGGCATGGCATGGTATGTAGCCATGGGCATCACTCCTTACACGAGCATGACCTTGACACCATGCTCATGCATATCTGCACCATAATTCTATGACTTATGGAGTGTCTATCAGCCATGGTTACTCCATAAGAAATGGGAATATCATCTGTAGTTCTTTTAGATCATACAAATACAGTTACTATTATTACTATTATAATTATTATAGTTATTGTTTATACAATAAATCCTTCTCGTTTTAGCATTTTATTACCTTGCTTCTACTATAAATTGTATAAATCAATTCAGAAAAGTACAAAAATTGATTATGAACAGCTTATTGGTATGCTTAATTGGGACGTCCTGCTCAAATGGGATGAAACCTAATAAACGAGTTTCTTCCACTCATTACATGCATGTGAATAACCGCATCTTTTCTGCAGGTCGAAAAATGGAACGAGCAAAGAGAGAACGGCACATTCCCTGGCCCTCTTTGAAGGAATGTTCATCACCTGGAAAGCACAGATTGTGAATTTATGTTTGTTCCAAAGTTCTATGAAGAAACTTTCCGAGTTCCATAATTTTTCCTCGCATCTCAAAAAATAATAAAGGATAGCATTTTTCTTTCAAGTCTTCTTGAGTAGTTATAACTCTCAATTGTTGATTGTGGACAAGGGTGAATTGATCCAAATGCATTATTCTCATCATTTGACTTCC

mRNA sequence

TCCACGTTATTACAGAGTCTTCCGTTTGATCTCCATTTCTTGGAGCTTGAATCTGATCAGTCATGGCCGAGATTGAGCTGAAAACAGCACCTGCTGACTTCCGATTCCCTACTACAAATCAAACCAGGCACTGTTTCACTCGTTACATTGAGTTCCACAGGTGCCTGGCAGCAAAGGGTGAGGAATCTGGTGAATGTGAGAGATTTGCAAAGTATTATCGTGCCCTTTGCCCTGGTGAATGGGTCGAAAAATGGAACGAGCAAAGAGAGAACGGCACATTCCCTGGCCCTCTTTGAAGGAATGTTCATCACCTGGAAAGCACAGATTGTGAATTTATGTTTGTTCCAAAGTTCTATGAAGAAACTTTCCGAGTTCCATAATTTTTCCTCGCATCTCAAAAAATAATAAAGGATAGCATTTTTCTTTCAAGTCTTCTTGAGTAGTTATAACTCTCAATTGTTGATTGTGGACAAGGGTGAATTGATCCAAATGCATTATTCTCATCATTTGACTTCC

Coding sequence (CDS)

ATGGCCGAGATTGAGCTGAAAACAGCACCTGCTGACTTCCGATTCCCTACTACAAATCAAACCAGGCACTGTTTCACTCGTTACATTGAGTTCCACAGGTGCCTGGCAGCAAAGGGTGAGGAATCTGGTGAATGTGAGAGATTTGCAAAGTATTATCGTGCCCTTTGCCCTGGTGAATGGGTCGAAAAATGGAACGAGCAAAGAGAGAACGGCACATTCCCTGGCCCTCTTTGA

Protein sequence

MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEWVEKWNEQRENGTFPGPL

Homology

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BLAST of Carg16409 vs. NCBI nr
Match: XP_022937604.1 (cytochrome c oxidase subunit 6b-2-like [Cucurbita moschata] >XP_022937605.1 cytochrome c oxidase subunit 6b-2-like [Cucurbita moschata])

HSP 1 Score: 174.1 bits (440), Expect = 1.8e-40
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VEKWNEQRENGTFPGPL
Sbjct: 61 VEKWNEQRENGTFPGPL 77

[Close]

BLAST of Carg16409 vs. NCBI nr
Match: XP_022153389.1 (cytochrome c oxidase subunit 6b-2 [Momordica charantia])

HSP 1 Score: 172.9 bits (437), Expect = 4.1e-40
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCL+AKGEESGECERFAKYYRALCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLSAKGEESGECERFAKYYRALCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VEKWNEQRENGTFPGPL
Sbjct: 61 VEKWNEQRENGTFPGPL 77

[Close]

BLAST of Carg16409 vs. NCBI nr
Match: XP_022929560.1 (cytochrome c oxidase subunit 6b-2 [Cucurbita moschata] >XP_023536781.1 cytochrome c oxidase subunit 6b-2 [Cucurbita pepo subsp. pepo] >XP_023547233.1 cytochrome c oxidase subunit 6b-2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.6 bits (436), Expect = 5.4e-40
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCL AKGEESGECERFAKYYRALCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VEKWNEQRENGTFPGPL
Sbjct: 61 VEKWNEQRENGTFPGPL 77

[Close]

BLAST of Carg16409 vs. NCBI nr
Match: XP_022997477.1 (cytochrome c oxidase subunit 6b-2 [Cucurbita maxima])

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-39
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCL AKGEESGECERFAKYYRALCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VE+WNEQRENGTFPGPL
Sbjct: 61 VERWNEQRENGTFPGPL 77

[Close]

BLAST of Carg16409 vs. NCBI nr
Match: XP_022969669.1 (cytochrome c oxidase subunit 6b-2-like [Cucurbita maxima])

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-39
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCL AKGEESGECERFAKYYRALCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VEKWN+QRENGTFPGPL
Sbjct: 61 VEKWNDQRENGTFPGPL 77

[Close]

BLAST of Carg16409 vs. TAIR10
Match: AT5G57815.1 (Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 160.2 bits (404), Expect = 5.0e-40
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 3  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEWVE 62
          EIELKTAPADFRFPTTNQTRHCFTRYIEFHRC  AKGEES +CERFAKYYRALCPGEWV+
Sbjct: 4  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVD 63

Query: 63 KWNEQRENGTFPGPL 78
          KWNEQRE+GTFPGPL
Sbjct: 64 KWNEQRESGTFPGPL 78

[Close]

BLAST of Carg16409 vs. TAIR10
Match: AT4G28060.1 (Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 158.7 bits (400), Expect = 1.5e-39
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 3  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEWVE 62
          EIELKTAPADFRFPTTNQTRHCFTRYIEFHRC  AKGE++ ECERFAKYYRALCPGEWV+
Sbjct: 4  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVD 63

Query: 63 KWNEQRENGTFPGPL 78
          KWNEQRE GTFPGPL
Sbjct: 64 KWNEQRETGTFPGPL 78

[Close]

BLAST of Carg16409 vs. TAIR10
Match: AT1G22450.1 (cytochrome C oxidase 6B)

HSP 1 Score: 148.3 bits (373), Expect = 2.0e-36
Identity = 59/75 (78.67%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 3   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEWVE 62
           EI+L+TAPADFRFPTTNQTRHCFTRY+E+HRC+AAKG+++ EC++FAK+YR+LCP EWV+
Sbjct: 116 EIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVD 175

Query: 63  KWNEQRENGTFPGPL 78
           +WNEQRENGTFPGPL
Sbjct: 176 RWNEQRENGTFPGPL 190

[Close]

BLAST of Carg16409 vs. TAIR10
Match: AT1G32710.1 (Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-11
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 9   APADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEWVEK-WNEQ 68
           A  + RFP TN+TRHCF R++++H+C+   G ++ +C     Y R++CP E V K W + 
Sbjct: 59  AAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSKIWLKS 118

Query: 69  REN 71
             N
Sbjct: 119 GRN 121

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BLAST of Carg16409 vs. Swiss-Prot
Match: sp|Q945L0|CX6B2_ARATH (Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 9.0e-39
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 3  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEWVE 62
          EIELKTAPADFRFPTTNQTRHCFTRYIEFHRC  AKGEES +CERFAKYYRALCPGEWV+
Sbjct: 4  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVD 63

Query: 63 KWNEQRENGTFPGPL 78
          KWNEQRE+GTFPGPL
Sbjct: 64 KWNEQRESGTFPGPL 78

[Close]

BLAST of Carg16409 vs. Swiss-Prot
Match: sp|Q9SUD3|CX6B3_ARATH (Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=2 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 2.6e-38
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 3  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEWVE 62
          EIELKTAPADFRFPTTNQTRHCFTRYIEFHRC  AKGE++ ECERFAKYYRALCPGEWV+
Sbjct: 4  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVD 63

Query: 63 KWNEQRENGTFPGPL 78
          KWNEQRE GTFPGPL
Sbjct: 64 KWNEQRETGTFPGPL 78

[Close]

BLAST of Carg16409 vs. Swiss-Prot
Match: sp|Q9S7L9|CX6B1_ARATH (Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.5e-35
Identity = 59/75 (78.67%), Postives = 73/75 (97.33%), Query Frame = 0


Query: 3   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEWVE 62
           EI+L+TAPADFRFPTTNQTRHCFTRY+E+HRC+AAKG+++ EC++FAK+YR+LCP EWV+
Sbjct: 116 EIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVD 175

Query: 63  KWNEQRENGTFPGPL 78
           +WNEQRENGTFPGPL
Sbjct: 176 RWNEQRENGTFPGPL 190

[Close]

BLAST of Carg16409 vs. Swiss-Prot
Match: sp|O94581|COX12_SCHPO (Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cox12 PE=3 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 5.0e-21
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 8  TAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEWVEKWNEQ 67
          T   D RFP TNQT+HCF  YI++ RC+ AKGE+   C++F   Y++LCP EWVE+W+EQ
Sbjct: 17 TVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQ 76

Query: 68 RENGTFPGPL 78
          RENGTFP P+
Sbjct: 77 RENGTFPAPI 86

[Close]

BLAST of Carg16409 vs. Swiss-Prot
Match: sp|P14854|CX6B1_HUMAN (Cytochrome c oxidase subunit 6B1 OS=Homo sapiens OX=9606 GN=COX6B1 PE=1 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 8.8e-18
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 7  KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESGECERFAKYYRALCPGEWVEK 66
          KTAP D RFP  NQTR+C+  Y++FHRC   + AKG +   CE + + Y++LCP  WV  
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTD 72

Query: 67 WNEQRENGTFPGPL 78
          W+EQR  GTFPG +
Sbjct: 73 WDEQRAEGTFPGKI 86

[Close]

BLAST of Carg16409 vs. TrEMBL
Match: tr|A0A2P5FNE5|A0A2P5FNE5_9ROSA (Cytochrome c oxidase subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_048130 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.0e-39
Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECE+FA+YYR+LCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECEKFARYYRSLCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VEKWNEQR+NGTFPGPL
Sbjct: 61 VEKWNEQRDNGTFPGPL 77

[Close]

BLAST of Carg16409 vs. TrEMBL
Match: tr|A0A2P5BI56|A0A2P5BI56_PARAD (Cytochrome c oxidase subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_237120 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.0e-39
Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECE+FA+YYR+LCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECEKFARYYRSLCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VEKWNEQR+NGTFPGPL
Sbjct: 61 VEKWNEQRDNGTFPGPL 77

[Close]

BLAST of Carg16409 vs. TrEMBL
Match: tr|A0A1S3BUT2|A0A1S3BUT2_CUCME (Cytochrome c oxidase subunit OS=Cucumis melo OX=3656 GN=LOC103493433 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.9e-39
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEW 60
          M EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCL AKGEESGECERFAKYYRALCPGEW
Sbjct: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          V+KWNEQRENGTFPGPL
Sbjct: 61 VDKWNEQRENGTFPGPL 77

[Close]

BLAST of Carg16409 vs. TrEMBL
Match: tr|A0A2P6QU01|A0A2P6QU01_ROSCH (Cytochrome c oxidase subunit OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0405051 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.9e-39
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEW 60
          MAE+ELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERF+KYYR+LCPGEW
Sbjct: 1  MAEVELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFSKYYRSLCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VEKWNEQRE GTFPGPL
Sbjct: 61 VEKWNEQRETGTFPGPL 77

[Close]

BLAST of Carg16409 vs. TrEMBL
Match: tr|I3SE54|I3SE54_LOTJA (Cytochrome c oxidase subunit OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.1e-39
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAP DFRFPTTNQTRHCFTRYIEFHRCLA KGEESGECERFAKYYR+LCPGEW
Sbjct: 1  MAEIELKTAPVDFRFPTTNQTRHCFTRYIEFHRCLAVKGEESGECERFAKYYRSLCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VEKWNEQR+NGTFPGPL
Sbjct: 61 VEKWNEQRDNGTFPGPL 77

The following BLAST results are available for this feature:

BLAST of Carg16409 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937604.1	1.8e-40	100.00	cytochrome c oxidase subunit 6b-2-like [Cucurbita moschata] >XP_022937605.1 cyto...	[more]
XP_022153389.1	4.1e-40	98.70	cytochrome c oxidase subunit 6b-2 [Momordica charantia]	[more]
XP_022929560.1	5.4e-40	98.70	cytochrome c oxidase subunit 6b-2 [Cucurbita moschata] >XP_023536781.1 cytochrom...	[more]
XP_022997477.1	1.2e-39	97.40	cytochrome c oxidase subunit 6b-2 [Cucurbita maxima]	[more]
XP_022969669.1	1.2e-39	97.40	cytochrome c oxidase subunit 6b-2-like [Cucurbita maxima]	[more]

BLAST of Carg16409 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57815.1	5.0e-40	92.00	Cytochrome c oxidase, subunit Vib family protein	[more]
AT4G28060.1	1.5e-39	90.67	Cytochrome c oxidase, subunit Vib family protein	[more]
AT1G22450.1	2.0e-36	78.67	cytochrome C oxidase 6B	[more]
AT1G32710.1	1.3e-11	39.68	Cytochrome c oxidase, subunit Vib family protein	[more]

BLAST of Carg16409 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q945L0\|CX6B2_ARATH	9.0e-39	92.00	Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=...	[more]
sp\|Q9SUD3\|CX6B3_ARATH	2.6e-38	90.67	Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=...	[more]
sp\|Q9S7L9\|CX6B1_ARATH	3.5e-35	78.67	Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=...	[more]
sp\|O94581\|COX12_SCHPO	5.0e-21	58.57	Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
sp\|P14854\|CX6B1_HUMAN	8.8e-18	51.35	Cytochrome c oxidase subunit 6B1 OS=Homo sapiens OX=9606 GN=COX6B1 PE=1 SV=2	[more]

BLAST of Carg16409 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5FNE5\|A0A2P5FNE5_9ROSA	3.0e-39	94.81	Cytochrome c oxidase subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_048130 P...	[more]
tr\|A0A2P5BI56\|A0A2P5BI56_PARAD	3.0e-39	94.81	Cytochrome c oxidase subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_2371...	[more]
tr\|A0A1S3BUT2\|A0A1S3BUT2_CUCME	3.9e-39	96.10	Cytochrome c oxidase subunit OS=Cucumis melo OX=3656 GN=LOC103493433 PE=3 SV=1	[more]
tr\|A0A2P6QU01\|A0A2P6QU01_ROSCH	3.9e-39	94.81	Cytochrome c oxidase subunit OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0405051...	[more]
tr\|I3SE54\|I3SE54_LOTJA	5.1e-39	94.81	Cytochrome c oxidase subunit OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005739	mitochondrion

Vocabulary: **INTERPRO**
Term	Definition
IPR036549	Cyt_c_oxidase_su6B_sf
IPR003213	Cyt_c_oxidase_su6B

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16409-RA	Carg16409-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003213	Cytochrome c oxidase, subunit VIb	PFAM	PF02297	COX6B	coord: 14..73 e-value: 1.2E-17 score: 63.8
IPR003213	Cytochrome c oxidase, subunit VIb	PIRSF	PIRSF000278	COX_VIb	coord: 1..77 e-value: 5.0E-37 score: 124.0
IPR003213	Cytochrome c oxidase, subunit VIb	PANTHER	PTHR11387	CYTOCHROME C OXIDASE POLYPEPTIDE VIB	coord: 2..77
IPR003213	Cytochrome c oxidase, subunit VIb	CDD	cd00926	Cyt_c_Oxidase_VIb	coord: 3..76 e-value: 3.26904E-36 score: 117.794
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	GENE3D	G3DSA:1.10.10.140		coord: 1..77 e-value: 7.3E-36 score: 124.4
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	SUPERFAMILY	SSF47694	Cytochrome c oxidase subunit h	coord: 4..76
None	No IPR available	PANTHER	PTHR11387:SF30	SUBFAMILY NOT NAMED	coord: 2..77
None	No IPR available	PRODOM	PD015172		coord: 10..77 e-value: 1.0E-32 score: 343.0
None	No IPR available	PROSITE	PS51808	CHCH	coord: 21..64 score: 13.593

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16409	Cla022868	Watermelon (97103) v1	carwmB0914
Carg16409	Csa2G037250	Cucumber (Chinese Long) v2	carcuB0929
Carg16409	MELO3C004105	Melon (DHL92) v3.5.1	carmeB0900
Carg16409	ClCG11G012640	Watermelon (Charleston Gray)	carwcgB0888
Carg16409	CSPI02G05470	Wild cucumber (PI 183967)	carcpiB0952
Carg16409	Cucsa.089880	Cucumber (Gy14) v1	carcgyB1029
Carg16409	CmaCh12G008300	Cucurbita maxima (Rimu)	carcmaB1254
Carg16409	CmoCh12G008340	Cucurbita moschata (Rifu)	carcmoB1223
Carg16409	Lsi11G007130	Bottle gourd (USVL1VR-Ls)	carlsiB829
Carg16409	Cp4.1LG07g06880	Cucurbita pepo (Zucchini)	carcpeB1263
Carg16409	CsGy2G005600	Cucumber (Gy14) v2	carcgybB0902
Carg16409	MELO3C004105.2	Melon (DHL92) v3.6.1	carmedB0908
Carg16409	CsaV3_2G007830	Cucumber (Chinese Long) v3	carcucB0952
Carg16409	Cla97C11G218510	Watermelon (97103) v2	carwmbB0954
Carg16409	Bhi06G001190	Wax gourd	carwgoB1054

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16409	Watermelon (97103) v2	carwmbB0959
Carg16409	Silver-seed gourd	carcarB493
Carg16409	Cucumber (Gy14) v2	carcgybB0901
Carg16409	Cucurbita maxima (Rimu)	carcmaB1253
Carg16409	Wild cucumber (PI 183967)	carcpiB0951
Carg16409	Cucumber (Chinese Long) v3	carcucB0951
Carg16409	Melon (DHL92) v3.5.1	carmeB0898
Carg16409	Melon (DHL92) v3.6.1	carmedB0907
Carg16409	Watermelon (Charleston Gray)	carwcgB0892
Carg16409	Watermelon (97103) v1	carwmB0915