Cp4.1LG11g05870 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g05870
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Cytochrome c oxidase subunit 6b
Location	Cp4.1LG11 : 3486670 .. 3489699 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGATCGATCCCTTTTTGTTCAACTTATACGGCTCCTTCGTCCACCTTCCATTGCAGAGTCTTCCGTTTGATCTCCTCACTTTCTTGGAGCTTGAATCCGATCAGTCATGGCCGAGGTAAGCTTCGTTTCGTTCTGTTTCTATGTTTAGTTGCGTGAAAAATCGATGGCAGTGAATTTTTCTTTTCATTTTCCCATCATTAACGGCTCCGATTTGGATGGGATAATCGTTTTCTGTATGAAAAATATGTTTCCGTAATGTTTGTTTTGTTTGGATTTCACGTATAATCTCGATTATAGTTTAGAGGAATGGTTTTTTTGCTTTTTCTTTTTAGATGCTTCCGACAAACCGGCTTCACTCGTCACATTTTCTGACGTACTGGTAGGATTTAGATTTCCTTAGAATTTAGAAGATGGATTGTGTTCGAAACTGGATTATGTTTTGCGTGCAACGAGCGATGAAATTCTTCAACGCTTGTTGGATATATACCCGGAGTCTTTACACTTGTATTTGTTGCATTTTGGACGCAGTAAAGAGATTGGAAGCTGTAAAACCTGTTAGGAAAAGAACATGAATTTCTTTTATTTAAACGAGAAGCAGAGGTTATGAAATAAATTAAACAGCTGGAAAACAAAGAAGAAGAATGCCTTTTCTATTGATGTCGCCAATGAAGTTGTGATTTAATATGTGGGACGGAATTCTTGTTTACAATTGAAAAACCTACGAATCCCCTCTTTGGCCTGTCCGATTGTTACCAAAATTAAGGTTCACGTCATGAATACTGCTCACGAGAATAGAGAACTGAACGCTCTAAATCTCTCTACAGTTTCTTCGTAGTGGCAGATCCCAATAATGATTTGATAAGAGAAATTCTACCCAAATGATTCTGGTTGAAAGAAAATTGATATACTTGTGGAAAAAGAATATAAAGAGGAGATGCAGGTCCTGGCAAATGCAAATTCTCTGACCACTGTCCAAGCAAACATCACACTGGGGGAGAAAGAACTGATGATTTGAGAAATATATGCTTATTAGAATAGTAGATAATAGGACATGGGAAGGATGAAACATATCTCCAGTACATCTGAAAAAGGATAGTAAATAGAACTCCCAATAAGCAATAATAGGAGAAAGATCAGAAGTACAAAAGCTATGTCAATTTAGCATAACTTTACTCATGTAATGAATGTTTATGTTTAAAAAATCTGTTTTTCATGGATGTATTGTCTACCCATGCTTCATACTTGACACTGTACGTATTGTATGTAATGTTTCTTGCTGTTGTCAATAATTGAAGATTGTAACCTAGGAATGTCAGCTAGCATATTGCTGTTTGCCATGAGTTGAGGTAAAGAAGGCACAAGATAATTTGTAAAATGTTGCAATGTTCTATTCACTCATATTGGAAGGATGTTATTAAGAAATCGATTACTAGATACCTGTATCTGATTGAATGAAAATTTAATGATGCGTATCTCTTTGTTACATCGACAAACAGATATATTGAGTATGTATTAGACAAGTGGTTAATCCTTCATCAAGATAATCCTCTTCAATGTCCATTTTATTTTATTTTTCCTATGCCTTTTTGTTCTTTTATCTCAGATTGAGCTGAAAACAGCACCTGCTGACTTCCGATTCCCTACTACAAATCAAACCAGGCACTGTTTCACTCGTTACATTGAGTTCCACAGGTCCATTTTTCTTACAACTTGGAACGAGAGTTAAAATTAAAAAATGAAAGGGTCTATAGTCTTCTCTGTTTTCATCATTAGTTTTCCCCTGAAGTATGCGGAACTTTCCACAGGTGCCTGACAGCGAAGGGCGAGGAGTCCGGTGAATGCGAGAGATTTGCAAAGTATTATCGTGCCCTTTGCCCTGGTGAATGGGTGAGTTCTTTGTTGCACTTGGTGTTGCTAAAAGTAAATATAATGTTTTTTATCCTATTTTCCCTCTCATATTGATGCAGTCCTGCCAACATTTTGGTGGATGGCCACAAGAATTCTTTTGCCTCTTTCAATAGCATTGCTTGATTTTTTTAATGCAAACTCTCTGGATTTAATCCTAAGTTCCATTCATAAAATTTTCTCTATGAACCAGGAAGATTCTTCTTTGATACCTCTATGCCCTGTGGCGTTAGATTACATGTTTATATTCTTATTGGCTACTGAAGCTATTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTATCAGGTTAGGCAATAATATTTAAATTTTAGTTGATGTTGAATGATTAAAATCAAAATTGTGAAAGTCTAGGACCACAATTCTAAAAAATGATAGATCAGATATTTAGGAACTGAAACTATATCTGAACCACGCCCATGAATAGAGCACCATGATTCTATGGGTTGTTGAGTCTATCAGCCCACCTTTATGAACCTCTGCCTGTTGATATGCTTAAACCGCATCGTTCCTGCAGGTCGAAAAATGGAATGAGCAGAGAGAGAATGGCACATTCCCCGGCCCTCTTTGAACGAATGTTCATCACCCCAGAAAAGCACAGATTGTCAATTTTATGTTTGTTCTCAAGTTGTATCAAAAAACTGTTTGGGAGTTCCATTATTTTTCATTGCCTTGATCTATTGTGTATCTCATGTTCTATAAGTAAAGAACATCATTCTGTTGCTTTGAGGAAGTGGAAGCATTGTGTTTAATATGGTCAAAAGGTTAAAGACAGAGAGAGGGCCAAGATTGCAATTTCCCATATGCTTTTGGGGCTTTGTGAATTGGTTTTGAAGCTTTCCATATTATAAACTATCTTCAACAGAATTGCTGCATGGAAGGAAGAGCTTCTGAATTGAATGAATCTTCGTCCATTTGCTGCCTTTCAAATTCAAAACTTGAGCTTAAATTTACTCATTGTTGCTTTGAATGGAAGATTTGGTAAGTTTCTTTCAAATAGGAAACCCAACCCAAGCTTTTAAGTACCCATTTTATTCCGCCCTTATCCATTTAAATTTGTTCAATATATATTTATATTAGAGGAT

mRNA sequence

AAAGATCGATCCCTTTTTGTTCAACTTATACGGCTCCTTCGTCCACCTTCCATTGCAGAGTCTTCCGTTTGATCTCCTCACTTTCTTGGAGCTTGAATCCGATCAGTCATGGCCGAGATTGAGCTGAAAACAGCACCTGCTGACTTCCGATTCCCTACTACAAATCAAACCAGGCACTGTTTCACTCGTTACATTGAGTTCCACAGGTGCCTGACAGCGAAGGGCGAGGAGTCCGGTGAATGCGAGAGATTTGCAAAGTATTATCGTGCCCTTTGCCCTGGTGAATGGGTCGAAAAATGGAATGAGCAGAGAGAGAATGGCACATTCCCCGGCCCTCTTTGAACGAATGTTCATCACCCCAGAAAAGCACAGATTGTCAATTTTATGTTTGTTCTCAAGTTGTATCAAAAAACTGTTTGGGAGTTCCATTATTTTTCATTGCCTTGATCTATTGTGTATCTCATGTTCTATAAGTAAAGAACATCATTCTGTTGCTTTGAGGAAGTGGAAGCATTGTGTTTAATATGGTCAAAAGGTTAAAGACAGAGAGAGGGCCAAGATTGCAATTTCCCATATGCTTTTGGGGCTTTGTGAATTGGTTTTGAAGCTTTCCATATTATAAACTATCTTCAACAGAATTGCTGCATGGAAGGAAGAGCTTCTGAATTGAATGAATCTTCGTCCATTTGCTGCCTTTCAAATTCAAAACTTGAGCTTAAATTTACTCATTGTTGCTTTGAATGGAAGATTTGGTAAGTTTCTTTCAAATAGGAAACCCAACCCAAGCTTTTAAGTACCCATTTTATTCCGCCCTTATCCATTTAAATTTGTTCAATATATATTTATATTAGAGGAT

Coding sequence (CDS)

ATGGCCGAGATTGAGCTGAAAACAGCACCTGCTGACTTCCGATTCCCTACTACAAATCAAACCAGGCACTGTTTCACTCGTTACATTGAGTTCCACAGGTGCCTGACAGCGAAGGGCGAGGAGTCCGGTGAATGCGAGAGATTTGCAAAGTATTATCGTGCCCTTTGCCCTGGTGAATGGGTCGAAAAATGGAATGAGCAGAGAGAGAATGGCACATTCCCCGGCCCTCTTTGA

Protein sequence

MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEWVEKWNEQRENGTFPGPL

Homology

[Close]

BLAST of Cp4.1LG11g05870 vs. Swiss-Prot
Match: CX6B2_ARATH (Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana GN=COX6B-2 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 2.3e-39
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 1


Query: 3  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEWVE 62
          EIELKTAPADFRFPTTNQTRHCFTRYIEFHRC TAKGEES +CERFAKYYRALCPGEWV+
Sbjct: 4  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVD 63

Query: 63 KWNEQRENGTFPGPL 78
          KWNEQRE+GTFPGPL
Sbjct: 64 KWNEQRESGTFPGPL 78

[Close]

BLAST of Cp4.1LG11g05870 vs. Swiss-Prot
Match: CX6B3_ARATH (Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana GN=COX6B-3 PE=2 SV=2)

HSP 1 Score: 160.6 bits (405), Expect = 6.8e-39
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 3  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEWVE 62
          EIELKTAPADFRFPTTNQTRHCFTRYIEFHRC TAKGE++ ECERFAKYYRALCPGEWV+
Sbjct: 4  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVD 63

Query: 63 KWNEQRENGTFPGPL 78
          KWNEQRE GTFPGPL
Sbjct: 64 KWNEQRETGTFPGPL 78

[Close]

BLAST of Cp4.1LG11g05870 vs. Swiss-Prot
Match: CX6B1_ARATH (Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.0e-34
Identity = 58/75 (77.33%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 3   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEWVE 62
           EI+L+TAPADFRFPTTNQTRHCFTRY+E+HRC+ AKG+++ EC++FAK+YR+LCP EWV+
Sbjct: 116 EIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVD 175

Query: 63  KWNEQRENGTFPGPL 78
           +WNEQRENGTFPGPL
Sbjct: 176 RWNEQRENGTFPGPL 190

[Close]

BLAST of Cp4.1LG11g05870 vs. Swiss-Prot
Match: COX12_SCHPO (Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox12 PE=3 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 4.9e-21
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1


Query: 8  TAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEWVEKWNEQ 67
          T   D RFP TNQT+HCF  YI++ RC+ AKGE+   C++F   Y++LCP EWVE+W+EQ
Sbjct: 17 TVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQ 76

Query: 68 RENGTFPGPL 78
          RENGTFP P+
Sbjct: 77 RENGTFPAPI 86

[Close]

BLAST of Cp4.1LG11g05870 vs. Swiss-Prot
Match: CX6B1_HUMAN (Cytochrome c oxidase subunit 6B1 OS=Homo sapiens GN=COX6B1 PE=1 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-18
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 1


Query: 7  KTAPADFRFPTTNQTRHCFTRYIEFHRC---LTAKGEESGECERFAKYYRALCPGEWVEK 66
          KTAP D RFP  NQTR+C+  Y++FHRC   +TAKG +   CE + + Y++LCP  WV  
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTD 72

Query: 67 WNEQRENGTFPGPL 78
          W+EQR  GTFPG +
Sbjct: 73 WDEQRAEGTFPGKI 86

[Close]

BLAST of Cp4.1LG11g05870 vs. TrEMBL
Match: A0A0A0LH49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G037250 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.1e-39
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          M EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLT KGEESGECERFAKYYRALCPGEW
Sbjct: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          V+KWNEQRENGTFPGPL
Sbjct: 61 VDKWNEQRENGTFPGPL 77

[Close]

BLAST of Cp4.1LG11g05870 vs. TrEMBL
Match: C6T6B8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-39
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCL AKGE SGECERFAKYYR+LCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLVAKGENSGECERFAKYYRSLCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VE+WNEQRENGTFPGPL
Sbjct: 61 VERWNEQRENGTFPGPL 77

[Close]

BLAST of Cp4.1LG11g05870 vs. TrEMBL
Match: A0A0B2Q8D5_GLYSO (Cytochrome c oxidase subunit 6b-1 OS=Glycine soja GN=glysoja_005732 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-39
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCL AKGE SGECERFAKYYR+LCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGENSGECERFAKYYRSLCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VE+WNEQRENGTFPGPL
Sbjct: 61 VERWNEQRENGTFPGPL 77

[Close]

BLAST of Cp4.1LG11g05870 vs. TrEMBL
Match: I3SE54_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-38
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAP DFRFPTTNQTRHCFTRYIEFHRCL  KGEESGECERFAKYYR+LCPGEW
Sbjct: 1  MAEIELKTAPVDFRFPTTNQTRHCFTRYIEFHRCLAVKGEESGECERFAKYYRSLCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VEKWNEQR+NGTFPGPL
Sbjct: 61 VEKWNEQRDNGTFPGPL 77

[Close]

BLAST of Cp4.1LG11g05870 vs. TrEMBL
Match: I1MSX7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.4e-38
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          M EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCL AKGE SGECERFAKYYR+LCPGEW
Sbjct: 1  MTEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGENSGECERFAKYYRSLCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VE+WNEQRENGTFPGPL
Sbjct: 61 VERWNEQRENGTFPGPL 77

[Close]

BLAST of Cp4.1LG11g05870 vs. TAIR10
Match: AT5G57815.1 (AT5G57815.1 Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 162.2 bits (409), Expect = 1.3e-40
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 1


Query: 3  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEWVE 62
          EIELKTAPADFRFPTTNQTRHCFTRYIEFHRC TAKGEES +CERFAKYYRALCPGEWV+
Sbjct: 4  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVD 63

Query: 63 KWNEQRENGTFPGPL 78
          KWNEQRE+GTFPGPL
Sbjct: 64 KWNEQRESGTFPGPL 78

[Close]

BLAST of Cp4.1LG11g05870 vs. TAIR10
Match: AT4G28060.1 (AT4G28060.1 Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 160.6 bits (405), Expect = 3.8e-40
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 3  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEWVE 62
          EIELKTAPADFRFPTTNQTRHCFTRYIEFHRC TAKGE++ ECERFAKYYRALCPGEWV+
Sbjct: 4  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVD 63

Query: 63 KWNEQRENGTFPGPL 78
          KWNEQRE GTFPGPL
Sbjct: 64 KWNEQRETGTFPGPL 78

[Close]

BLAST of Cp4.1LG11g05870 vs. TAIR10
Match: AT1G22450.1 (AT1G22450.1 cytochrome C oxidase 6B)

HSP 1 Score: 146.7 bits (369), Expect = 5.7e-36
Identity = 58/75 (77.33%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 3   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEWVE 62
           EI+L+TAPADFRFPTTNQTRHCFTRY+E+HRC+ AKG+++ EC++FAK+YR+LCP EWV+
Sbjct: 116 EIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVD 175

Query: 63  KWNEQRENGTFPGPL 78
           +WNEQRENGTFPGPL
Sbjct: 176 RWNEQRENGTFPGPL 190

[Close]

BLAST of Cp4.1LG11g05870 vs. TAIR10
Match: AT1G32710.1 (AT1G32710.1 Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-11
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 1


Query: 9   APADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEWVEK-WNEQ 68
           A  + RFP TN+TRHCF R++++H+C+   G ++ +C     Y R++CP E V K W + 
Sbjct: 59  AAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSKIWLKS 118

Query: 69  REN 71
             N
Sbjct: 119 GRN 121

[Close]

BLAST of Cp4.1LG11g05870 vs. NCBI nr
Match: gi|659069910|ref|XP_008452371.1| (PREDICTED: cytochrome c oxidase subunit 6b-2 [Cucumis melo])

HSP 1 Score: 170.6 bits (431), Expect = 1.0e-39
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          M EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW
Sbjct: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          V+KWNEQRENGTFPGPL
Sbjct: 61 VDKWNEQRENGTFPGPL 77

[Close]

BLAST of Cp4.1LG11g05870 vs. NCBI nr
Match: gi|449453930|ref|XP_004144709.1| (PREDICTED: cytochrome c oxidase subunit 6b-2 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 3.0e-39
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          M EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLT KGEESGECERFAKYYRALCPGEW
Sbjct: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          V+KWNEQRENGTFPGPL
Sbjct: 61 VDKWNEQRENGTFPGPL 77

[Close]

BLAST of Cp4.1LG11g05870 vs. NCBI nr
Match: gi|734365156|gb|KHN17535.1| (Cytochrome c oxidase subunit 6b-1 [Glycine soja])

HSP 1 Score: 167.9 bits (424), Expect = 6.8e-39
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCL AKGE SGECERFAKYYR+LCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGENSGECERFAKYYRSLCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VE+WNEQRENGTFPGPL
Sbjct: 61 VERWNEQRENGTFPGPL 77

[Close]

BLAST of Cp4.1LG11g05870 vs. NCBI nr
Match: gi|255633956|gb|ACU17340.1| (unknown [Glycine max])

HSP 1 Score: 167.9 bits (424), Expect = 6.8e-39
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCL AKGE SGECERFAKYYR+LCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLVAKGENSGECERFAKYYRSLCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VE+WNEQRENGTFPGPL
Sbjct: 61 VERWNEQRENGTFPGPL 77

[Close]

BLAST of Cp4.1LG11g05870 vs. NCBI nr
Match: gi|388500960|gb|AFK38546.1| (unknown [Lotus japonicus])

HSP 1 Score: 166.8 bits (421), Expect = 1.5e-38
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60
          MAEIELKTAP DFRFPTTNQTRHCFTRYIEFHRCL  KGEESGECERFAKYYR+LCPGEW
Sbjct: 1  MAEIELKTAPVDFRFPTTNQTRHCFTRYIEFHRCLAVKGEESGECERFAKYYRSLCPGEW 60

Query: 61 VEKWNEQRENGTFPGPL 78
          VEKWNEQR+NGTFPGPL
Sbjct: 61 VEKWNEQRDNGTFPGPL 77

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g05870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CX6B2_ARATH	2.3e-39	93.33	Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana GN=COX6B-2 PE=2 SV=1	[more]
CX6B3_ARATH	6.8e-39	92.00	Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana GN=COX6B-3 PE=2 SV=2	[more]
CX6B1_ARATH	1.0e-34	77.33	Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=1 SV=1	[more]
COX12_SCHPO	4.9e-21	58.57	Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
CX6B1_HUMAN	2.3e-18	52.70	Cytochrome c oxidase subunit 6B1 OS=Homo sapiens GN=COX6B1 PE=1 SV=2	[more]

BLAST of Cp4.1LG11g05870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH49_CUCSA	2.1e-39	96.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G037250 PE=4 SV=1	[more]
C6T6B8_SOYBN	4.7e-39	94.81	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
A0A0B2Q8D5_GLYSO	4.7e-39	94.81	Cytochrome c oxidase subunit 6b-1 OS=Glycine soja GN=glysoja_005732 PE=4 SV=1	[more]
I3SE54_LOTJA	1.1e-38	93.51	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
I1MSX7_SOYBN	1.4e-38	93.51	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]

BLAST of Cp4.1LG11g05870 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57815.1	1.3e-40	93.33	Cytochrome c oxidase, subunit Vib family protein	[more]
AT4G28060.1	3.8e-40	92.00	Cytochrome c oxidase, subunit Vib family protein	[more]
AT1G22450.1	5.7e-36	77.33	cytochrome C oxidase 6B	[more]
AT1G32710.1	1.3e-11	39.68	Cytochrome c oxidase, subunit Vib family protein	[more]

BLAST of Cp4.1LG11g05870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069910\|ref\|XP_008452371.1\|	1.0e-39	97.40	PREDICTED: cytochrome c oxidase subunit 6b-2 [Cucumis melo]	[more]
gi\|449453930\|ref\|XP_004144709.1\|	3.0e-39	96.10	PREDICTED: cytochrome c oxidase subunit 6b-2 [Cucumis sativus]	[more]
gi\|734365156\|gb\|KHN17535.1\|	6.8e-39	94.81	Cytochrome c oxidase subunit 6b-1 [Glycine soja]	[more]
gi\|255633956\|gb\|ACU17340.1\|	6.8e-39	94.81	unknown [Glycine max]	[more]
gi\|388500960\|gb\|AFK38546.1\|	1.5e-38	93.51	unknown [Lotus japonicus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005739	mitochondrion

Vocabulary: **Molecular Function**
Term	Definition
GO:0004129	cytochrome-c oxidase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR003213	Cyt_c_oxidase_su6B

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	hydrogen ion transmembrane transport
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV
molecular_function	GO:0004129	cytochrome-c oxidase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g05870.1	Cp4.1LG11g05870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003213	Cytochrome c oxidase, subunit VIb	GENE3D	G3DSA:1.10.10.140		coord: 3..76 score: 1.2
IPR003213	Cytochrome c oxidase, subunit VIb	PIR	PIRSF000278	COX_VIb	coord: 1..77 score: 3.3
IPR003213	Cytochrome c oxidase, subunit VIb	PFAM	PF02297	COX6B	coord: 14..73 score: 3.9
IPR003213	Cytochrome c oxidase, subunit VIb	unknown	SSF47694	Cytochrome c oxidase subunit h	coord: 4..76 score: 7.19
None	No IPR available	PRODOM	PD015172		coord: 10..77 score: 5.0
None	No IPR available	PANTHER	PTHR11387	CYTOCHROME C OXIDASE POLYPEPTIDE VIB	coord: 3..77 score: 5.2
None	No IPR available	PANTHER	PTHR11387:SF15	CYTOCHROME C OXIDASE SUBUNIT 6B-1	coord: 3..77 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g05870	Cucsa.089880	Cucumber (Gy14) v1	cgycpeB0170
Cp4.1LG11g05870	CmaCh05G006580	Cucurbita maxima (Rimu)	cmacpeB766
Cp4.1LG11g05870	CmoCh05G006900	Cucurbita moschata (Rifu)	cmocpeB720
Cp4.1LG11g05870	Cla022868	Watermelon (97103) v1	cpewmB123
Cp4.1LG11g05870	Csa2G037250	Cucumber (Chinese Long) v2	cpecuB098
Cp4.1LG11g05870	MELO3C004105	Melon (DHL92) v3.5.1	cpemeB103
Cp4.1LG11g05870	ClCG11G012640	Watermelon (Charleston Gray)	cpewcgB099
Cp4.1LG11g05870	CSPI02G05470	Wild cucumber (PI 183967)	cpecpiB095
Cp4.1LG11g05870	Lsi11G007130	Bottle gourd (USVL1VR-Ls)	cpelsiB070
Cp4.1LG11g05870	MELO3C004105.2	Melon (DHL92) v3.6.1	cpemedB129
Cp4.1LG11g05870	CsaV3_2G007830	Cucumber (Chinese Long) v3	cpecucB0108
Cp4.1LG11g05870	Bhi06G001190	Wax gourd	cpewgoB0126
Cp4.1LG11g05870	CsGy2G005600	Cucumber (Gy14) v2	cgybcpeB164
Cp4.1LG11g05870	Carg08347	Silver-seed gourd	carcpeB0079

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None